RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62] (200 letters) >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 32.9 bits (75), Expect = 0.034 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 47/133 (35%) Query: 60 HSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQ 119 HS ++ N +K +R+ Q L + +I + Sbjct: 14 HSSVKYASPNLN----------MK------YRKRQ-----L----VTREAQIKDWVENEL 48 Query: 120 KTNNEEA-------IASIIWHRYQHMDYKGKTEQEKRALAKQSRDDF----QRYATAQAA 168 + EA + R + + Q + A +Q +DF R A + A Sbjct: 49 EALKLEAEEIPSEDQNEFLLERTREIH-NEAESQLRAAQ-QQWGNDFYKRDPRIAPLRGA 106 Query: 169 NQKAADMLMLATY 181 LATY Sbjct: 107 ---------LATY 110 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 26.7 bits (59), Expect = 2.1 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 12/33 (36%) Query: 125 EAIASIIWHRYQHMDYKGKTEQEKRALAKQSRD 157 E++ +++ Y+G T Q A+ RD Sbjct: 9 ESLVEVVF-------YRGMTMQ--VAV---PRD 29 >2uyw_A Xenavidin; beta-barrel, biotin-binding protein, glycoprotein; HET: BTN; 1.7A {Xenopus tropicalis} PDB: 2uz2_A* (A:) Length = 130 Score = 26.8 bits (59), Expect = 2.3 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%) Query: 118 YQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQA 167 E I +W + + EQ+ + + F R + + Sbjct: 82 CFLNEKGEEILHTMWL----LRSSQEKEQDNWTGTRVGANTFTRLSKKKI 127 >2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel; 0.86A {Vibrio SP} (A:) Length = 333 Score = 25.6 bits (55), Expect = 4.6 Identities = 8/72 (11%), Positives = 13/72 (18%), Gaps = 3/72 (4%) Query: 108 KEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQA 167 A + N + + E A+A + Sbjct: 46 DGLNSDADAGAGRNN---IAELANAYPTSALVVGVSMNGEVDAVASGRYNANIDTLLNTL 102 Query: 168 ANQKAADMLMLA 179 A L A Sbjct: 103 AGYDRPVYLRWA 114 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.311 0.129 0.370 Gapped Lambda K H 0.267 0.0597 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,490,181 Number of extensions: 62719 Number of successful extensions: 104 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 9 Length of query: 200 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 116 Effective length of database: 2,116,429 Effective search space: 245505764 Effective search space used: 245505764 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 52 (24.1 bits)