RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 32.9 bits (75), Expect = 0.034
 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 47/133 (35%)

Query: 60  HSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQ 119
           HS  ++     N          +K      +R+ Q     L       + +I    +   
Sbjct: 14  HSSVKYASPNLN----------MK------YRKRQ-----L----VTREAQIKDWVENEL 48

Query: 120 KTNNEEA-------IASIIWHRYQHMDYKGKTEQEKRALAKQSRDDF----QRYATAQAA 168
           +    EA           +  R + +       Q + A  +Q  +DF     R A  + A
Sbjct: 49  EALKLEAEEIPSEDQNEFLLERTREIH-NEAESQLRAAQ-QQWGNDFYKRDPRIAPLRGA 106

Query: 169 NQKAADMLMLATY 181
                    LATY
Sbjct: 107 ---------LATY 110


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.7 bits (59), Expect = 2.1
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 12/33 (36%)

Query: 125 EAIASIIWHRYQHMDYKGKTEQEKRALAKQSRD 157
           E++  +++       Y+G T Q   A+    RD
Sbjct: 9   ESLVEVVF-------YRGMTMQ--VAV---PRD 29


>2uyw_A Xenavidin; beta-barrel, biotin-binding protein,
           glycoprotein; HET: BTN; 1.7A {Xenopus tropicalis} PDB:
           2uz2_A* (A:)
          Length = 130

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)

Query: 118 YQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQA 167
                  E I   +W     +    + EQ+     +   + F R +  + 
Sbjct: 82  CFLNEKGEEILHTMWL----LRSSQEKEQDNWTGTRVGANTFTRLSKKKI 127


>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel; 0.86A
           {Vibrio SP} (A:)
          Length = 333

 Score = 25.6 bits (55), Expect = 4.6
 Identities = 8/72 (11%), Positives = 13/72 (18%), Gaps = 3/72 (4%)

Query: 108 KEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQA 167
                 A     + N          +    +        E  A+A    +          
Sbjct: 46  DGLNSDADAGAGRNN---IAELANAYPTSALVVGVSMNGEVDAVASGRYNANIDTLLNTL 102

Query: 168 ANQKAADMLMLA 179
           A       L  A
Sbjct: 103 AGYDRPVYLRWA 114


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,490,181
Number of extensions: 62719
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 9
Length of query: 200
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 116
Effective length of database: 2,116,429
Effective search space: 245505764
Effective search space used: 245505764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)