RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 26.6 bits (57), Expect = 1.4
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 97  IENLRKPTEAEKEKILAARDRYQKTNNEEAIASI 130
           ++ LR+  E  K +I  AR         +   +I
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNI 37


>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 167

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 118 YQKTNNEEAIASIIWHRY--QHMDYKGKTEQEKRALAKQSRDDFQRYATAQAA 168
           YQ  N +E +  + +  Y  ++          K+ LA+   D   +Y   + A
Sbjct: 100 YQFDNTQEILRHLAFRNYLRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDA 152


>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
          scrofa) [TaxId: 9823]}
          Length = 179

 Score = 23.9 bits (51), Expect = 8.5
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 6/57 (10%)

Query: 11 KKLGI--VSVLIPVVLGVSNCDHSDSQHPPVIPILKDDKNDGEPRKPTPLDHSDSQH 65
           KLG+    V   ++ G    +HS +Q+P V       +           D S  + 
Sbjct: 14 LKLGVTSDDVKNVIIWG----NHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKG 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 718,911
Number of extensions: 31049
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 5
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)