HHsearch alignment for GI: 255764501 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=100.00 E-value=1.4e-45 Score=259.80 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68867999995698999999999999999999999999999999970799617999999999998899999999999972
Q gi|255764501|r 37 HMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYG 116 (535)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~l~nTl~~a~~s~~~~~~ig~~~A~~~~~~~~~~~~~~~~~~~lp~~~P~~v~~~~~~~~~~ 116 (535)
T Consensus 48 G~Sl~WY~~l~~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~ 127 (267)
T COG1177 48 GFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFA 127 (267)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 87889999985784899999999999999999999999999999997040268999999974241509999999999999
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH
Q ss_conf 27854210331588876433326999999999876654899999985088899999986214714677544200166402
Q gi|255764501|r 117 RTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQI 196 (535)
Q Consensus 117 ~~G~~~~~l~~~g~~~~~~~~~~~~iii~~~~~~~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~i 196 (535)
T Consensus 128 ~~~---------------~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgI 192 (267)
T COG1177 128 ALG---------------LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGI 192 (267)
T ss_pred HCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 868---------------87529999999999986689999999997389679999987699888898997697527999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 45777877765258415664036655441145556777653200000013455788999998530134332
Q gi|255764501|r 197 LPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKFNVS 267 (535)
Q Consensus 197 ~~~~~l~f~~~~~~f~~~~~lgg~~~~~tl~~~iy~~~~~~~~~~~aa~la~il~~~~~~~~~~~~~~~~~ 267 (535)
T Consensus 193 lsg~llaF~~S~Defvit~f~~g-p~~~TLP~~i~s~~r~~~-~P~i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 193 LSGALLAFTLSFDEFVITFFLAG-PGFTTLPLQIYSMIRRGI-TPEINALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHEECC-CCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999867786311328-998721899999865589-8199999999999999999999998643