HHsearch alignment for GI: 255764501 and conserved domain: TIGR00974

>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.90  E-value=6.9e-23  Score=138.52  Aligned_cols=207  Identities=16%  Similarity=0.153  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCC
Q ss_conf             35479999999999997656652111122100022115651267999999974655323766766430123467---756
Q gi|255764501|r  326 SGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTV---NLT  402 (535)
Q Consensus       326 ~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~---~~~  402 (535)
T Consensus        57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~--~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~  134 (302)
T TIGR00974        57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAK--EGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGG  134 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5336779999999999999999999998887553067--89400568788887521169999999999999776864522


Q ss_pred             CCCCCCCC-EEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             65534431-02465212156999999897289778999997397876999999999546899999999999985110116
Q gi|255764501|r  403 SSSYSLII-VTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGII  481 (535)
Q Consensus       403 ~~~~~~ii-la~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~  481 (535)
T Consensus       135 ~~S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPL  214 (302)
T TIGR00974       135 GFSALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPL  214 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             06778799999999999999999899997247888899997260021133224413103689999999999999989999


Q ss_pred             EE---------EC-----------------CCCCCHHHHHHHHHHHC----CCC---H-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78---------64-----------------89830289899988617----981---3-699999999999999999999
Q gi|255764501|r  482 AL---------FG-----------------NDNFCTLPCYLYQQLGS----YRQ---S-DAVVTALLLLSLCLGLFSLLE  527 (535)
Q Consensus       482 ~l---------l~-----------------~~~~~Tl~~~i~~~~~~----~~~---~-~a~a~a~il~~i~~~~~~l~~  527 (535)
T Consensus       215 l~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~  294 (302)
T TIGR00974       215 LFTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIAR  294 (302)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999887764103566777677777542257641368888876401467884268889999999999999999999999


Q ss_pred             HHHCCCC
Q ss_conf             9714668
Q gi|255764501|r  528 YLSGKEY  534 (535)
Q Consensus       528 ~l~~r~~  534 (535)
T Consensus       295 ~~~~~~~  301 (302)
T TIGR00974       295 LLRRRFK  301 (302)
T ss_pred             HHHHHHC
T ss_conf             9997524