HHsearch alignment for GI: 255764501 and conserved domain: TIGR00974

>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.83  E-value=7.9e-19  Score=116.91  Aligned_cols=209  Identities=22%  Similarity=0.188  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             89999999999999999999999999999999707996--1799999999999889999999999997227854210331
Q gi|255764501|r   50 SYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFP--GRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQW  127 (535)
Q Consensus        50 ~~~~~~l~nTl~~a~~s~~~~~~ig~~~A~~~~~~~~~--~~~~~~~~~~lp~~~P~~v~~~~~~~~~~~~G~~~~~l~~  127 (535)
T Consensus        57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i-~l~~-  134 (302)
T TIGR00974        57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGI-YLGG-  134 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-
T ss_conf             53367799999999999999999999988875530678940056878888752116999999999999977686-4522-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             58887643332699999999987665489999998508889999998621471467754420016640245777877765
Q gi|255764501|r  128 LGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLC  207 (535)
Q Consensus       128 ~g~~~~~~~~~~~~iii~~~~~~~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~i~~~~~l~f~~~  207 (535)
T Consensus       135 -------~~S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~  207 (302)
T TIGR00974       135 -------GFSALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARA  207 (302)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             -------0677879999999999999999989999724788889999726002113322441310368999999999999


Q ss_pred             HCCCHHHHHH--CC------------------------CCCCCCHHHHHHHHHHH----HHHC--C-CCHHHHHHHHHHH
Q ss_conf             2584156640--36------------------------65544114555677765----3200--0-0001345578899
Q gi|255764501|r  208 FASFATVLTL--GG------------------------GPASTTIELAIYQSLSY----DFDL--N-KAAFLSLVQIFCC  254 (535)
Q Consensus       208 ~~~f~~~~~l--gg------------------------~~~~~tl~~~iy~~~~~----~~~~--~-~aa~la~il~~~~  254 (535)
T Consensus       208 ~GET-APLl~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~v  286 (302)
T TIGR00974       208 AGET-APLLFTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLV  286 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9989-999999998877641035667776777775422576413688888764014678842688899999999999999


Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             99985301343322
Q gi|255764501|r  255 LSLVLFNQKFNVSF  268 (535)
Q Consensus       255 ~~~~~~~~~~~~~~  268 (535)
T Consensus       287 l~~N~~a~~~~~~~  300 (302)
T TIGR00974       287 LLLNLIARLLRRRF  300 (302)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999752