HHsearch alignment for GI: 255764501 and conserved domain: cd06261
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.95 E-value=1.3e-27 Score=163.72 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCC
Q ss_conf 99999999997656652111122100022115651267999999974655323766766430123467756--6553443
Q gi|255764501|r 332 FFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLT--SSSYSLI 409 (535)
Q Consensus 332 ~~~Sl~~s~~~~~i~~~l~l~~a~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~--~~~~~~i 409 (535)
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~----~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILAR----KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPA 76 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9879999999999999999999999995----185088999999999998039999999999998412322147899999
Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 10246521215699999989728977899999739787699999999954689999999999998511011678648983
Q gi|255764501|r 410 IVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNF 489 (535)
Q Consensus 410 ila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~ll~~~~~ 489 (535)
T Consensus 77 i~~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~ 156 (190)
T cd06261 77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999838999999999869973465699879963999999999999999999999999968999
Q ss_pred CHHHHHH---HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 0289899---98861798136999999999999
Q gi|255764501|r 490 CTLPCYL---YQQLGSYRQSDAVVTALLLLSLC 519 (535)
Q Consensus 490 ~Tl~~~i---~~~~~~~~~~~a~a~a~il~~i~ 519 (535)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 189 (190)
T cd06261 157 PGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189 (190)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 968399999999987578699999999999997