HHsearch alignment for GI: 255764501 and conserved domain: pfam00528

>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.57  E-value=1.4e-14  Score=94.36  Aligned_cols=153  Identities=15%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             56512679999999746553237667664301234677566553443102465212156999999897289778999997
Q gi|255764501|r  363 RRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCIS  442 (535)
Q Consensus       363 ~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~  442 (535)
T Consensus        11 ~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~v~aA~~   88 (183)
T pfam00528        11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILS--ILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARA   88 (183)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             078589999999999999834999999999998423--667899999999999999999999999997068999999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             39787699999999954689999999999998511011678648983028989998861798136999999999999
Q gi|255764501|r  443 LQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLC  519 (535)
Q Consensus       443 lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~ll~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~il~~i~  519 (535)
T Consensus        89 ~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~--~GlG~~~~~a~~~~d~~~~~~~~~~~~~~~  163 (183)
T pfam00528        89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGPVLAAALIL  163 (183)
T ss_pred             CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             699843412992189899999999999999999999999999368--967599999999770999999999999999