HHsearch alignment for GI: 255764501 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.57 E-value=1.4e-14 Score=94.36 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 56512679999999746553237667664301234677566553443102465212156999999897289778999997
Q gi|255764501|r 363 RRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCIS 442 (535)
Q Consensus 363 ~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~ 442 (535)
T Consensus 11 ~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~v~aA~~ 88 (183)
T pfam00528 11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILS--ILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARA 88 (183)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 078589999999999999834999999999998423--667899999999999999999999999997068999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 39787699999999954689999999999998511011678648983028989998861798136999999999999
Q gi|255764501|r 443 LQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLC 519 (535)
Q Consensus 443 lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~ll~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~il~~i~ 519 (535)
T Consensus 89 ~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~--~GlG~~~~~a~~~~d~~~~~~~~~~~~~~~ 163 (183)
T pfam00528 89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW--PGLGLLLIEAILGYDYPEIQGPVLAAALIL 163 (183)
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699843412992189899999999999999999999999999368--967599999999770999999999999999