RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764501|ref|YP_003064973.2| thiamine transporter membrane
protein [Candidatus Liberibacter asiaticus str. psy62]
(535 letters)
>gnl|CDD|181853 PRK09433, thiP, thiamine transporter membrane protein; Reviewed.
Length = 525
Score = 735 bits (1901), Expect = 0.0
Identities = 298/523 (56%), Positives = 388/523 (74%), Gaps = 1/523 (0%)
Query: 13 LWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVI 72
L PGV+ + L + L + +LW H P W +DSYLWHV+ F+FWQA LS LLSV+
Sbjct: 3 LIPGVLAAALLVALALLALLALWLHAPGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVL 62
Query: 73 PSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVY 132
P+I LA++L+RR FPGR L LRL M VLPV V + G+ +VYGR+GW+AQL Q LG+ +
Sbjct: 63 PAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEW 122
Query: 133 QFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYL 192
F++YG++GILL HVFFN+PLA R+LLQAL+SI EQRQLA QLGM W FFR VEWPYL
Sbjct: 123 PFSIYGLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYL 182
Query: 193 RRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIF 252
RRQ+ P ++LIFMLCF SFATVLTLGGGP +TTIELAIYQ+LS+DFDL +AA L+L+Q+
Sbjct: 183 RRQLPPVAALIFMLCFTSFATVLTLGGGPKATTIELAIYQALSFDFDLARAALLALLQMV 242
Query: 253 CCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIWFFILPLLAIIIE 312
CL LVL +Q+ + + + G + W++ DS WSR WD LI A+ + PLLA+++
Sbjct: 243 LCLGLVLLSQRLSKAIAVGATLLRGWRDPQDSLWSRLWDGLLIVLALLLLLPPLLAVVVS 302
Query: 313 GMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIF 372
G+NA LLR+L Q LW + + S+ IA+ A +L ++ T+MLLW+ RELRLR+ K
Sbjct: 303 GLNAS-LLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQAL 361
Query: 373 ELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDL 432
ELS +LILA+P IVLA G FLLL+NT +L +S+ ++I+TNALMA+PYA+++LE PM D+
Sbjct: 362 ELSGMLILAMPGIVLATGLFLLLRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDI 421
Query: 433 AERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTL 492
A RY LC SL I+G +RL LIE +AL+R +AQ F+F+C LS+GDFG+IALFG+ +F TL
Sbjct: 422 AARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQDFRTL 481
Query: 493 PCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535
P LYQQLGSYR DA VTALLLL LCL LF+L+E L G+
Sbjct: 482 PFLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIERLPGRHAK 524
Score = 69.5 bits (171), Expect = 2e-12
Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 24/261 (9%)
Query: 6 QPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALL 65
Q S+ + LW G++I L + ++ + + R + LW + + AL
Sbjct: 272 QDSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASLLRV-LAQPALWQALWTSLRIALA 330
Query: 66 STLLSVIPSIFLAKS-----LFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW 120
+ LL+V+ ++ L S L +R + L L +I +P V+ G+F + T
Sbjct: 331 AALLAVVLTMMLLWSSRELRLRQRKLAAQALEL-SGMLILAMPGIVLATGLFLLLRNTTD 389
Query: 121 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP 180
+ + ++L + +P A+R+L + I+ +L LG+
Sbjct: 390 LPASALGI-------------VILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRG 436
Query: 181 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSL-SYDFD 239
W R +E LRR + + L F V+ L G T+ +YQ L SY
Sbjct: 437 WSRLRLIELRALRRPLAQAFAFACALSLGDF-GVIALFGSQDFRTLPFLLYQQLGSY--R 493
Query: 240 LNKAAFLSLVQIFCCLSLVLF 260
AA +L+ + CL L
Sbjct: 494 SQDAAVTALLLLLLCLLLFTL 514
>gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein. The
model describes thiamine ABC transporter, permease
protein in bacteria. The protein belongs to the larger
ABC transport system. It consists of atleast three
components: the inner mebrane permease; thiamine binding
protein; an ATP-binding subunit. It has been
experimentally demonstrated that the mutants in the
various steps in the de novo synthesis of the thiamine
and the biologically active form, namely thiamine
pyrophosphate can be exogenously supplemented with
thiamine, thiamine monophosphate (TMP) or thiamine
pyrophosphate (TPP).
Length = 519
Score = 519 bits (1337), Expect = e-147
Identities = 251/512 (49%), Positives = 341/512 (66%)
Query: 15 PGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPS 74
GV F+ +++ WR +D YL H+I F+F QA LS LLS+ +
Sbjct: 8 GGVSAISFIIAFAGAAFLAIFALAGEDDWRAVFQDDYLQHLILFSFGQAFLSALLSIFFA 67
Query: 75 IFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQF 134
IFLA++LFR+ F G+ L+L + F+LP V I G+ +YGR GW+A L G+ +QF
Sbjct: 68 IFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQF 127
Query: 135 NLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRR 194
++YG++GIL+ H+FFN+PLA ++ LQAL++I EQRQLA QLG+ W+FF+FVEWP R+
Sbjct: 128 HIYGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQ 187
Query: 195 QILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCC 254
Q LPT++LIFMLCFASFATVL+LGGGP +TTIELAIYQ++ +DFDL KAA +L+Q CC
Sbjct: 188 QCLPTAALIFMLCFASFATVLSLGGGPQATTIELAIYQAILFDFDLAKAALFALLQFVCC 247
Query: 255 LSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIWFFILPLLAIIIEGM 314
L L L +Q+F+ + ++G S W + DD S+ D LI A++F PLLAIII+ +
Sbjct: 248 LGLFLLSQRFSKAIANGLSLLNGWFDPDDKLASKICDILLILLALFFLFPPLLAIIIDAL 307
Query: 315 NAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFEL 374
N++ LL +L LW + S+ IA+ A +L + I LL REL E+
Sbjct: 308 NSRNLLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSRELEALHKMKAGQFIEM 367
Query: 375 SELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAE 434
+ +LILA+P IVLA+GFFLLL + L + ++I NALMA+P+A+KILE P +D+
Sbjct: 368 AGMLILAIPGIVLAMGFFLLLNDRDFLNIDADGIVIFCNALMAIPFALKILEAPFHDIMA 427
Query: 435 RYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPC 494
RY LC SL I+G R LIE KALK +AQ F+F+C LSIGDFG IALFGND+F +LP
Sbjct: 428 RYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPF 487
Query: 495 YLYQQLGSYRQSDAVVTALLLLSLCLGLFSLL 526
LYQQ+G+YR DA VTA +LL LC LF+ +
Sbjct: 488 LLYQQIGNYRNQDAAVTAGILLLLCFILFAFI 519
Score = 40.3 bits (94), Expect = 0.001
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 11/218 (5%)
Query: 324 QQSGLWSSFFNSIYIAINAGVLCMIFTIML---LWTKREL-RLRRLKFFNHIFELSELL- 378
Q L S A + +L + F I L L+ K L + LK F L L+
Sbjct: 41 QDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVA 100
Query: 379 ILAVPSIVLAVGFFLLLKNTVNL--TSSSYSL--IIVTNALMAVPYAVKILENPMYDLAE 434
I + I G+ L N L Y L I++ + +P A ++ + ++
Sbjct: 101 IFGIIGIYGRQGWLATLANLFGLEWQFHIYGLQGILIAHLFFNIPLAAQLFLQALENIPG 160
Query: 435 RYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFG-IIALFGNDNFCTLP 493
L L ++G + +E+ ++ T + +L F +++L G T+
Sbjct: 161 EQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIE 220
Query: 494 CYLYQQLG-SYRQSDAVVTALLLLSLCLGLFSLLEYLS 530
+YQ + + + A + ALL CLGLF L + S
Sbjct: 221 LAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFS 258
>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein.
Molybdate is chemically similar to sulfate, thiosulfate,
and selenate. These related substrates, and sometimes
molybdate itself, can be transported by the homologous
sulfate receptor. Some apparent molybdenum transport
operons include a permease related to this ModB,
although less similar than some sulfate permease
proteins and not included in this model.
Length = 208
Score = 98.9 bits (247), Expect = 3e-21
Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 7/205 (3%)
Query: 63 ALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIA 122
A+++TLL + I +A L R F G+ L L T+ VLP V+ + +G G I
Sbjct: 7 AVIATLLLLPLGIPVAWWLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG 66
Query: 123 QLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWY 182
+L + GI F G +L V + PL ++ + A +++ + + A LG +
Sbjct: 67 KLLELFGISLVFTF---AGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASEIQ 123
Query: 183 FFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGG-PAST-TIELAIYQSLSYDFDL 240
F V P +L L F F L G P T TI LAIY + + D
Sbjct: 124 TFLKVTLPLAFPGLLAGCVLSFARALGEFGATLMFAGNIPGETQTIPLAIY--DAVESDY 181
Query: 241 NKAAFLSLVQIFCCLSLVLFNQKFN 265
A LSLV + L ++L + N
Sbjct: 182 ELAHQLSLVLLAFSLIVLLLVELLN 206
>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system
permease PhnU; Provisional.
Length = 296
Score = 83.9 bits (208), Expect = 9e-17
Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 6/224 (2%)
Query: 40 LISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMI 99
L ++R + + T A ST ++ + LA L FPG L R
Sbjct: 59 LATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTF 118
Query: 100 FVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQ--FN-LYGIKGILLVHVFFNMPLAIR 156
P F++ + +YG G + Q L + + LY G++L + F P +R
Sbjct: 119 VAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAPPLDFLYSPGGVILAEITFYTPFVVR 178
Query: 157 MLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLT 216
LL A + Q + A LG +PW R V P + SL +L F VL
Sbjct: 179 PLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLF 238
Query: 217 LGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLF 260
G T+ + IY DFD A +++V + LSL L+
Sbjct: 239 TGAKDV-VTLPVLIYSKAIVDFDYPTACAIAVVNL--ALSLGLY 279
>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease
protein. This ABC transporter permease
(membrane-spanning) component is found in a region of
the salmonella typhimurium LT2 genome responsible for
the catabolism of 2-aminoethylphosphonate via the phnWX
pathway (GenProp0238).
Length = 312
Score = 77.0 bits (189), Expect = 1e-14
Identities = 60/227 (26%), Positives = 89/227 (39%), Gaps = 12/227 (5%)
Query: 40 LISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMI 99
L ++R F +G T A + +++ LA LF FPG L R +
Sbjct: 78 LAAFRHFFASHDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLF 137
Query: 100 FVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFN------LYGIKGILLVHVFFNMPL 153
P F++ +YG G + + F+ L+G G++L + F P
Sbjct: 138 IAFPSFLIAFAFIFIYGSAGLLNGALMRA---FAFDAPPLDFLFGAGGVILAEITFFTPF 194
Query: 154 AIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFAT 213
+R LL A I + A LG + V +P I L F+L F
Sbjct: 195 VMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLLTLNEFGI 254
Query: 214 VLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLF 260
+L +G T+ +AIY D DL AA +L+ I LSL LF
Sbjct: 255 LLFIGAA-GLITLPMAIYSKAILDIDLPAAAAGALIMI--ALSLALF 298
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 458 ALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSD---AVVTALL 514
AL + A LL++ +FGI+ G TLP +Y + + D A AL+
Sbjct: 233 ALPAIAAGG-ILCFLLTLNEFGILLFIGAAGLITLPMAIYSK--AILDIDLPAAAAGALI 289
Query: 515 LLSLCLGLFSLLEYLSGK 532
+++L L LF+L + +
Sbjct: 290 MIALSLALFALYRLAARR 307
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein
CysT. This model represents CysT, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysW (TIGR02140). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present.
Length = 265
Score = 75.4 bits (186), Expect = 4e-14
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 21/250 (8%)
Query: 22 FLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVI---------GFTFWQALLSTLLSVI 72
+L+ I L + +L+ + W F W +I +F AL++ L++ +
Sbjct: 15 YLSLIVLLPLAALFLKASQLGWAGF------WQIITEPRVLAAYKLSFGTALIAALINAV 68
Query: 73 PSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVY 132
LA L R FPG+ + L + F LP V + + T+Y GWI LGI
Sbjct: 69 FGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKI 128
Query: 133 QFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYL 192
F GI++ VF ++P +R + L+ I E + A LG + W F V P L
Sbjct: 129 AFTPL---GIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPAL 185
Query: 193 RRQILPTSSLIFMLCFASFATVLTLGGG-PASTTI-ELAIYQSLSYDFDLNKAAFLSLVQ 250
+L +L F + +V+ + G P T I L I+Q L +D A ++ V
Sbjct: 186 LPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLE-QYDYAGATAIASVM 244
Query: 251 IFCCLSLVLF 260
+ ++LF
Sbjct: 245 LIISFVILLF 254
>gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein.
This model describes a subfamily of both CysT and CysW,
paralogous and generally tandemly encoded permease
proteins of the sulfate ABC transporter.
Length = 271
Score = 71.2 bits (175), Expect = 7e-13
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 6/226 (2%)
Query: 14 WPGVIISCFLNFIFFL-VVYSLWR--HMPLISWREFMEDSYLWHVIGFTFWQALLSTLLS 70
I ++ I L V + L + + D T AL++ L+
Sbjct: 17 LSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLN 76
Query: 71 VIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGI 130
+ + +A L R FPGR L L + F L V + + +YG GW+ GI
Sbjct: 77 GVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGI 136
Query: 131 VYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWP 190
F G+ L +F ++P +R + L+ + E + A LG + W F V P
Sbjct: 137 QIIFTWP---GMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLP 193
Query: 191 YLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSY 236
+R +L L F F V+ + G T+ L +
Sbjct: 194 SIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERL 239
>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in
this group is a gene designated NifC in Clostridium
pasturianum. It would be reasonable to presume that NifC
acts as a molybdate porter since the most common form of
nitrogenase is a molybdoenzyme. Several other sequences
falling within the scope of this model are annotated as
molybdate porters and one, from Halobacterium, is
annotated as a sulfate porter. There is presently no
experimental evidence to support annotations with this
degree of specificity.
Length = 225
Score = 65.1 bits (159), Expect = 4e-11
Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 6/199 (3%)
Query: 63 ALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIA 122
+L S LL+VI I A L R FP + L L + VLP V + + ++GR G +
Sbjct: 30 SLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLG 89
Query: 123 QLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWY 182
+ GI F+ G++L F P +R+ S+ +A LG P
Sbjct: 90 PYLEAAGIQVIFS---TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLE 146
Query: 183 FFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGP--ASTTIELAIYQSLSYD-FD 239
FR + P R +L L + F L G + T+ LAIY ++ D +
Sbjct: 147 TFRKITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIE 206
Query: 240 LNKAAFLSLVQIFCCLSLV 258
A+ L L+ I L LV
Sbjct: 207 AAVASALLLLVIAFLLLLV 225
>gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter,
permease protein.
Length = 546
Score = 62.8 bits (153), Expect = 2e-10
Identities = 82/394 (20%), Positives = 152/394 (38%), Gaps = 48/394 (12%)
Query: 45 EFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPV 104
E+ L +G + + + T + V + A +L R PG+ F ++ +LP+
Sbjct: 45 EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAF----RLVALLPL 100
Query: 105 FVVIM--GVFTVY--GRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQ 160
+ + +Y G G L LG F++YG GI++ VF+ P A+ +L+
Sbjct: 101 LAPSLLPAISLIYLFGNQGL---LKGLLG---GFSIYGFWGIVIGEVFYTFPHALMILVT 154
Query: 161 ALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGG 220
AL + A +G +PW F V P + ++ + ++F L F +GG
Sbjct: 155 ALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
Query: 221 PASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFN-----QKFNVSFSSGYSSR 275
+ IY+ + + A + + + +L+ F Q+ + S S
Sbjct: 215 --YNVLATDIYKQVIGQQNFPMGAVVGV--LLLLPALLAFGIDRAIQRRQRAQLSSRSVP 270
Query: 276 FLWKNEDDSRWSRWWD-FFLISCA-IWFFILPLLAIIIEGMNAK-----LLLRL------ 322
+ K +R D L+ CA I +L ++ + + K L L L
Sbjct: 271 YQPKP------NRVRDAACLVYCAIISAALLAVVGMAVYASLVKFWPYNLSLTLKHYNFD 324
Query: 323 LQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAV 382
L G W ++ NS+ +A ++ I + + R + +L +AV
Sbjct: 325 LMDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIE--KTRGFGLLRGVLRFLAILPMAV 382
Query: 383 PSIVLAVGFFLLLKNTVNLTSSSYS----LIIVT 412
P +VL +G+ N + Y L++ T
Sbjct: 383 PGLVLGLGYIFFFNAPTNPLNGLYGTMALLVLCT 416
Score = 28.1 bits (63), Expect = 6.1
Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 33/238 (13%)
Query: 301 FFILPLLAIIIEGMNAK--------LLLRLLQQSGLWSSFFNSIYIA--INAGVLCMIFT 350
F +LPLLA++ + + GL S NS+ ++ + A V+ + F
Sbjct: 17 FLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFA 76
Query: 351 IMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTS-----SS 405
T+ + + F L LL L PS++ A+ L N L S
Sbjct: 77 FAYALTRSRIPGKGA------FRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI 130
Query: 406 YSL--IIVTNALMAVPYAVKIL----ENPMYDLAERYNALCISLQIKGINRLYLIEFKAL 459
Y I++ P+A+ IL L E A+ S + +
Sbjct: 131 YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASP----WRTFFTVTLPGA 186
Query: 460 KRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQ-LGSYRQSDAVVTALLLL 516
K + L I DFG+ + G D + L +Y+Q +G V +LLL
Sbjct: 187 KYGLISAAFVVFTLVITDFGVPKVIGGD-YNVLATDIYKQVIGQQNFPMGAVVGVLLL 243
>gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein;
Reviewed.
Length = 229
Score = 60.7 bits (148), Expect = 8e-10
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Query: 46 FMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVF 105
+ W + + + ++ L S+ I +A L R FPG+ L L + VLP
Sbjct: 1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPV 60
Query: 106 VVIMGVFTVYGRTGWIAQ-LCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDS 164
V + GR G+I Q L +W GI + F+ +G L PL +R + +L++
Sbjct: 61 VTGYLLLISMGRRGFIGQWLYEWFGISFAFSW---RGAALAAAVMAFPLMVRAIRLSLEA 117
Query: 165 ISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASF-ATVLTLGGGPAS 223
+ + Q A LG +PW F + P I+ + L F F AT+ + P
Sbjct: 118 VDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFVSNIPGE 177
Query: 224 T-TIELAIY 231
T TI A+Y
Sbjct: 178 TQTIPSAMY 186
>gnl|CDD|162725 TIGR02140, permease_CysW, sulfate ABC transporter, permease protein
CysW. This model represents CysW, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysT (TIGR02139). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present.
Length = 261
Score = 59.3 bits (144), Expect = 2e-09
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 7/209 (3%)
Query: 54 HVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIF-VLPVFVVIMGVF 112
I T AL+ L+ + + A L R FPG+ L L + + F V PV ++ V
Sbjct: 47 SAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVL 106
Query: 113 TVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQL 172
+YG GW+ + L I F+L GI+L +F P R L+ ++ EQ +
Sbjct: 107 -LYGSQGWLGPWLEDLDIKIIFSL---PGIVLATMFVTCPFVARELIPVMEEQGTEQEEA 162
Query: 173 ALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQ 232
AL LG + W F V P ++ +L L F V + G T L ++
Sbjct: 163 ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHV 222
Query: 233 SLSYDFDLNKAAF--LSLVQIFCCLSLVL 259
L Y+ + AAF SL+ + ++LVL
Sbjct: 223 ELLYNEYQSYAAFAAASLLALLALVTLVL 251
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 277
Score = 56.3 bits (136), Expect = 2e-08
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 7/204 (3%)
Query: 59 TFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRT 118
T A ++++ + + + +A L R FPGR L L + F LP V + + +++
Sbjct: 63 TLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122
Query: 119 GWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGM 178
GW + I + GI + F ++P +R + L+ + E + A LG
Sbjct: 123 GWYGEWLAKFDIKVTYTWLGIA---VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGA 179
Query: 179 NPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTT--IELAIYQSLSY 236
W FR V P L +L +L F F V+ + G A T L I+ L
Sbjct: 180 TRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQ- 238
Query: 237 DFDLNKAAFLSLVQIFCCLSLVLF 260
+FD A+ ++ V + L L+LF
Sbjct: 239 EFDYPAASAIASVILAASL-LLLF 261
>gnl|CDD|183225 PRK11602, cysW, sulfate/thiosulfate transporter permease subunit;
Provisional.
Length = 283
Score = 52.4 bits (126), Expect = 3e-07
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 16 GVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSI 75
G+++S F+ + + ++ L+ + + D + H I T AL++ ++++ I
Sbjct: 26 GMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGI 85
Query: 76 FLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFN 135
LA + R +FPGR L L L + F + V + YG G + WL
Sbjct: 86 LLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG---WLDEHNLQL 142
Query: 136 LYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQ 195
++ G++LV +F P +R L+ + S ++ + A+ LG + W FR V P +R
Sbjct: 143 MFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWA 202
Query: 196 IL 197
+L
Sbjct: 203 LL 204
>gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system,
membrane component PhnV. This membrane component of an
ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 272
Score = 35.4 bits (81), Expect = 0.042
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 142 ILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSS 201
+L H + R AL + + A LG P R V P L I+ +
Sbjct: 146 VLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALA 205
Query: 202 LIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVL 259
L F L L + P T+ +AI+ + + AA LS++ + L ++
Sbjct: 206 LGFALSLGELGATLMI-YPPGFATLPIAIFGATDRGNIADAAA-LSILLLAASLLALI 261
Score = 28.8 bits (64), Expect = 3.2
Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 17/243 (6%)
Query: 299 IWFFILPLLAIIIEGMN---------AKLLLRLLQQS---GLWSSFFNSIYIAINAGVLC 346
FF LPL I + + A L ++ + + S+ I A
Sbjct: 25 CVFFFLPLAVIALSSLAGHWNGTILPAGFSLNHFVEALGGAAFDALAASLEIGFCAAAFA 84
Query: 347 MIFTIMLLWTKRELRLRRLKFFNHIFELSELLIL--AVPSIVLAVGFFLLLKNTVNLTSS 404
L L L K L L +L A+PS+ L + + +
Sbjct: 85 ---LACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAGPLDLNG 141
Query: 405 SYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMA 464
S ++++ + + + + + + SL RL + L +
Sbjct: 142 SLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIM 201
Query: 465 QTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFS 524
+ LS+G+ G + F TLP ++ +DA ++LLL+ L
Sbjct: 202 AALALGFALSLGELGATLMIYPPGFATLPIAIFGATDRGNIADAAALSILLLAASLLALI 261
Query: 525 LLE 527
+
Sbjct: 262 AIA 264
>gnl|CDD|177902 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 34.7 bits (80), Expect = 0.059
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 14/51 (27%)
Query: 112 FTVYGRTGWI----AQLCQWLGIVYQFN----------LYGIKGILLVHVF 148
F +YGRTGWI +LC+ GI Y++ L I+ + HVF
Sbjct: 383 FLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVF 433
>gnl|CDD|178377 PLN02778, PLN02778, 3,5-epimerase/4-reductase.
Length = 298
Score = 31.7 bits (72), Expect = 0.50
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 111 VFTVYGRTGWI----AQLCQWLGIVYQF 134
F +YG+TGWI +LCQ GI + +
Sbjct: 11 KFLIYGKTGWIGGLLGKLCQEQGIDFHY 38
>gnl|CDD|147896 pfam05987, DUF898, Bacterial protein of unknown function (DUF898).
This family consists of several bacterial proteins of
unknown function. Some of the family members are
described as putative membrane proteins.
Length = 340
Score = 31.4 bits (72), Expect = 0.57
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 288 RWWDFFLISCAIWFFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCM 347
DF+ + F+L +L +++ G L + + +A+ G L +
Sbjct: 174 TVGDFYKA--FLLAFLLFVLFLVVAGAALAGAFAALLGASGLGGDDLGLALAMLIGYLVL 231
Query: 348 IFTIMLLWTKRELRLRRLKFFNHI 371
I++ RLR L +N+
Sbjct: 232 YLLILVASAYYRARLRNL-VWNNT 254
>gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 281
Score = 29.8 bits (67), Expect = 1.8
Identities = 62/255 (24%), Positives = 95/255 (37%), Gaps = 52/255 (20%)
Query: 7 PSIRNALWPGVIISCFLNFIF----FLVVYS--------LWRHMPLISWREFMEDSYLWH 54
P +R+ W VI+ F++ LV+YS +W + E D +
Sbjct: 5 PVVRSP-WRIVILVLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMS 63
Query: 55 VIGFTFWQALLSTLLSVIPSIFLAKSLFR-RHFPGRILFLRLHTMIFVLPVFVVIMGV-- 111
+G + A + + I A + R F G F + T V+P VI G+
Sbjct: 64 AVGLSLTIAACAATAAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPD--VITGLSL 121
Query: 112 ---FTVYGRT-GWIAQLCQWLGIVYQFNLYGIKGILLVHVFF---NMPLAIRMLLQALDS 164
F GW A G+ I L HV F + + I L+ LD
Sbjct: 122 LLLFVALAHAIGWPAD-------------RGMLTIWLAHVTFCTAYVAVVISSRLRELDR 168
Query: 165 ISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCF-----ASFATVLTLGG 219
SIE+ A+ LG P F + P + I+ L F L ASF +
Sbjct: 169 -SIEEA--AMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVS------ 219
Query: 220 GPASTTIELAIYQSL 234
GP +TT+ + ++ S+
Sbjct: 220 GPGATTLPMLVFSSV 234
>gnl|CDD|182541 PRK10551, PRK10551, phage resistance protein; Provisional.
Length = 518
Score = 29.6 bits (67), Expect = 2.4
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 333 FNSIYIAINAGVLCMIFTIMLLWTKRELRLRRL-----KFFNHIFE 373
SI + +L +LLW KRE++ L K+ + F
Sbjct: 14 LTSIVAGVMIALLFSCLQFLLLWHKREVKYDTLITDVQKYLDTYFA 59
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease
GltK; Provisional.
Length = 224
Score = 29.4 bits (66), Expect = 2.4
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 164 SISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILP-----------TSSLIFMLCFASFA 212
SIS Q AL LGM W + + P R ++P +SL+++L A F
Sbjct: 122 SISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADFF 181
Query: 213 TVLTLGGGPASTTIELAIYQSLSY 236
+ G T +E+ ++ Y
Sbjct: 182 RTASTIGERDGTQVEMILFAGFVY 205
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
Length = 1394
Score = 28.9 bits (65), Expect = 3.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 33 SLWRHMPLISWREFMED----SYLWH----------VIGFTFWQALLST--LLSVIPSIF 76
SLW L+ WR F + YL+ IGFTF++ S L + + ++F
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVF 1134
Query: 77 LAKSLF 82
+A LF
Sbjct: 1135 MATVLF 1140
>gnl|CDD|179333 PRK01766, PRK01766, multidrug efflux protein; Reviewed.
Length = 456
Score = 28.6 bits (65), Expect = 3.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 342 AGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELS-----ELLILAVPSIVLAVGFF 392
A V ++F ML++ KR R R + F +++ LL L +P I LA+ FF
Sbjct: 201 AIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP-IGLAI-FF 254
Score = 27.5 bits (62), Expect = 9.2
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 7 PSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYL----WHVIGFTFWQ 62
+R LW + +S + + + V + M L + YL W + + +Q
Sbjct: 89 HQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQ 148
Query: 63 AL 64
L
Sbjct: 149 VL 150
>gnl|CDD|172868 PRK14392, PRK14392, membrane protein; Provisional.
Length = 207
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 290 WDFFLISCAIWFFILPLLAII-IEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMI 348
FF+I+ AIWF ++ L +++ + M +L+ + S ++ + A L ++
Sbjct: 119 PPFFVIASAIWFSLILLTSMVSVASMIGMVLI------TIISLVYHDWLLTTVACGLTVV 172
Query: 349 FTI 351
Sbjct: 173 VFY 175
>gnl|CDD|180467 PRK06203, aroB, 3-dehydroquinate synthase; Reviewed.
Length = 389
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 56 IGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGR 89
+GF + L+T S + FR H GR
Sbjct: 317 LGFPLYHPALATRDSKGRELLKGLEEFREHLGGR 350
>gnl|CDD|180444 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 27.7 bits (62), Expect = 7.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 411 VTNALMAVPYAVKILENP---MYDLAERYNALCISLQIKGINRLYLIEFKAL 459
VT +M V AV+++++P YDL+ +S +K +N Y ++AL
Sbjct: 300 VTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSF-VKKLNPDYRQRWRAL 350
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.334 0.145 0.465
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,967,460
Number of extensions: 608895
Number of successful extensions: 2754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2702
Number of HSP's successfully gapped: 133
Length of query: 535
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,876,889
Effective search space: 1694200493
Effective search space used: 1694200493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (27.0 bits)