Query gi|255764502|ref|YP_003064963.2| hypothetical protein CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 100
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 16:10:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764502.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1kv9_A Type II quinohemoprote 19.7 66 0.002 14.1 2.2 13 73-85 2-14 (65)
2 >3enu_A Nitrollin, putative un 18.6 29 0.00086 16.1 0.0 23 10-32 58-81 (114)
3 >1y4j_A Sulfatase modifying fa 13.9 32 0.00095 15.8 -0.7 16 54-69 3-18 (152)
4 >2pfu_A Biopolymer transport E 12.8 44 0.0013 15.1 -0.3 29 70-98 18-46 (99)
5 >2jwk_A Protein TOLR; periplas 11.1 1.1E+02 0.0032 13.0 1.2 17 72-88 3-19 (74)
6 >2ek0_A Stage V sporulation pr 11.1 1.2E+02 0.0034 12.8 2.2 22 65-86 56-77 (90)
7 >2ad6_A Methanol dehydrogenase 8.8 1.4E+02 0.0042 12.4 2.3 18 68-85 2-19 (71)
8 >1kb0_A Quinohemoprotein alcoh 8.6 1.4E+02 0.0043 12.3 2.1 13 73-85 2-14 (64)
9 >1nr3_A MTH0916, DNA-binding p 8.0 1.5E+02 0.0046 12.2 2.3 25 62-87 49-73 (76)
10 >3dqy_A Toluene 1,2-dioxygenas 7.8 1.5E+02 0.0044 12.3 0.9 12 66-77 10-21 (35)
No 1
>>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} (A:301-365)
Probab=19.70 E-value=66 Score=14.14 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=9.3
Q ss_pred EEEEEEECCCEEE
Q ss_conf 0799970377069
Q gi|255764502|r 73 PIMIDVKRDGEIR 85 (100)
Q Consensus 73 pimidvkrdgeir 85 (100)
|+++|+++||+.+
T Consensus 2 p~L~D~~~dGk~~ 14 (65)
T 1kv9_A 2 ITLAELNIDGKPR 14 (65)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEEEECCCEE
T ss_conf 0344330789688
No 2
>>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A (A:)
Probab=18.60 E-value=29 Score=16.07 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=18.1
Q ss_pred HHHHHHHCCCCC-EEEEECCCCCC
Q ss_conf 899762133686-04897132132
Q gi|255764502|r 10 IRKIRSRSKGNR-NLTILDGRMNS 32 (100)
Q Consensus 10 irkirsrskgnr-nltildgrmns 32 (100)
-|||||-|-|.| ||+|.|..|-.
T Consensus 58 ~~~i~SV~VGPRA~L~i~~~~~~r 81 (114)
T 3enu_A 58 ENKVRSVKVGPRANLTIFDNHNYR 81 (114)
T ss_dssp TTTCCEEEECTTEEEEEESSSTTC
T ss_pred HHCCCEEEECCCCEEEEEECCCCC
T ss_conf 532634642686404885034433
No 3
>>1y4j_A Sulfatase modifying factor 2; formylglycine, sulfatases, multiple sulfatase deficiency, homodimer, DUF323, sugar binding protein; HET: NAG FUC; 1.86A {Homo sapiens} (A:1-59,A:124-193,A:262-284)
Probab=13.92 E-value=32 Score=15.83 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.5
Q ss_pred HHHHHCCCCEEEEEEC
Q ss_conf 9887202105674211
Q gi|255764502|r 54 VMVLIPKAEFILGLDI 69 (100)
Q Consensus 54 vmvlipkaefilgldi 69 (100)
-||+||..+|.+|.+-
T Consensus 3 ~mv~ip~G~f~mG~~~ 18 (152)
T 1y4j_A 3 SMVQLQGGRFLMGTNS 18 (152)
T ss_dssp CEEEECCEEEEESCCC
T ss_pred CCCEECCCEEECCCCC
T ss_conf 7748899488778998
No 4
>>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12} (A:)
Probab=12.80 E-value=44 Score=15.08 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCEEEEEHHHHHHHHHHH
Q ss_conf 11507999703770696015667877752
Q gi|255764502|r 70 KRYPIMIDVKRDGEIRVQGQQVLLNEITK 98 (100)
Q Consensus 70 krypimidvkrdgeirvqgqqvllneitk 98 (100)
..-++.|.+..||.+...|+.+-++++..
T Consensus 18 ~~~~i~i~i~~~g~i~~~~~~v~~~~l~~ 46 (99)
T 2pfu_A 18 PEKPVYLSVKADNSMFIGNDPVTDETMIT 46 (99)
T ss_dssp CCCCCEEEEETTTEEEETTEEECSSSHHH
T ss_pred CCCCEEEEEECCCCEEECCEECCHHHHHH
T ss_conf 99878999936987999114013066899
No 5
>>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A (A:)
Probab=11.09 E-value=1.1e+02 Score=13.03 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=13.6
Q ss_pred CEEEEEEECCCEEEEEH
Q ss_conf 50799970377069601
Q gi|255764502|r 72 YPIMIDVKRDGEIRVQG 88 (100)
Q Consensus 72 ypimidvkrdgeirvqg 88 (100)
-|+.+.+.+||.+-+.+
T Consensus 3 ~pi~VsI~~dG~~~i~~ 19 (74)
T 2jwk_A 3 VPVILEVAGIGKYAISI 19 (74)
T ss_dssp SCEEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCCEEEEC
T ss_conf 89899991793289953
No 6
>>2ek0_A Stage V sporulation protein S (spovs) related protein; structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2eh1_A (A:)
Probab=11.06 E-value=1.2e+02 Score=12.84 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEECCCCEEEEEEECCCEEEE
Q ss_conf 7421111507999703770696
Q gi|255764502|r 65 LGLDIKRYPIMIDVKRDGEIRV 86 (100)
Q Consensus 65 lgldikrypimidvkrdgeirv 86 (100)
-|+|+.--|-..|+.-|||-|.
T Consensus 56 ~giDl~~~PaF~~i~i~ge~rT 77 (90)
T 2ek0_A 56 DNLDLVVKPAFVKLELENEERT 77 (90)
T ss_dssp GTEEEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEEEECCEEEE
T ss_conf 5842999601689977897989
No 7
>>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoreductase; HET: PQQ; 1.50A {Methylophilus methylotrophus W3A1} (A:298-368)
Probab=8.84 E-value=1.4e+02 Score=12.37 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=12.5
Q ss_pred ECCCCEEEEEEECCCEEE
Q ss_conf 111150799970377069
Q gi|255764502|r 68 DIKRYPIMIDVKRDGEIR 85 (100)
Q Consensus 68 dikrypimidvkrdgeir 85 (100)
|.---|+++|+++||+.+
T Consensus 2 D~~~~piL~d~~~~Gk~~ 19 (71)
T 2ad6_A 2 AGVNQMVLTDQPVNGKMT 19 (71)
T ss_dssp CCCCCCEEEEEEETTEEE
T ss_pred CCCCCCEEEEEECCCCCC
T ss_conf 566451367652057665
No 8
>>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:314-377)
Probab=8.64 E-value=1.4e+02 Score=12.33 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=8.6
Q ss_pred EEEEEEECCCEEE
Q ss_conf 0799970377069
Q gi|255764502|r 73 PIMIDVKRDGEIR 85 (100)
Q Consensus 73 pimidvkrdgeir 85 (100)
|+.+|++.||+.+
T Consensus 2 p~L~D~~~dG~~~ 14 (64)
T 1kb0_A 2 MILADIKIAGKPR 14 (64)
T ss_dssp CEEEEEEETTEEE
T ss_pred EEECCEEECCCEE
T ss_conf 2402223069545
No 9
>>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} (A:47-122)
Probab=8.02 E-value=1.5e+02 Score=12.17 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=18.1
Q ss_pred CEEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 05674211115079997037706960
Q gi|255764502|r 62 EFILGLDIKRYPIMIDVKRDGEIRVQ 87 (100)
Q Consensus 62 efilgldikrypimidvkrdgeirvq 87 (100)
++|-|--+| -|+-+.+..||+++|.
T Consensus 49 ~~i~~R~vk-~~~~V~v~~dG~i~V~ 73 (76)
T 1nr3_A 49 HRIVHRVVK-SDFEIGVTRDGEIIVD 73 (76)
T ss_dssp SSCCCCCSS-SCEEEEESSSSSEEEE
T ss_pred HHHCCCEEC-CCEEEEECCCCEEEEE
T ss_conf 765177550-1379998589749997
No 10
>>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} (A:1-11,A:83-106)
Probab=7.84 E-value=1.5e+02 Score=12.26 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=9.3
Q ss_pred EEECCCCEEEEE
Q ss_conf 421111507999
Q gi|255764502|r 66 GLDIKRYPIMID 77 (100)
Q Consensus 66 gldikrypimid 77 (100)
.|.||-|||-+.
T Consensus 10 dlpikv~pikie 21 (35)
T 3dqy_A 10 DLPIKVFPIKVE 21 (35)
T ss_dssp GSCCCEECEEEE
T ss_pred HCCCCEEEEEEE
T ss_conf 999777959999
Done!