Query gi|255764502|ref|YP_003064963.2| hypothetical protein CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 100
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:15:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764502.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nr3a_ d.236.1.1 (A:) DNA-bin 12.1 43 0.0032 13.0 2.3 24 63-87 96-119 (122)
2 d1y4ja1 d.169.1.7 (A:28-294) S 9.6 22 0.0016 14.6 -0.7 16 53-68 1-16 (267)
3 d2b3ya2 c.83.1.1 (A:2-630) Iro 7.1 38 0.0028 13.3 -0.4 37 16-55 530-566 (629)
4 d1h3ga2 b.71.1.1 (A:518-600) C 7.1 24 0.0017 14.5 -1.4 24 52-75 21-44 (83)
5 d1z70x1 d.169.1.7 (X:1086-1371 6.8 34 0.0025 13.6 -0.7 17 53-69 4-20 (286)
6 d2d0oa3 c.55.1.6 (A:404-606) D 6.2 48 0.0035 12.8 -0.2 13 63-75 52-64 (203)
7 d1nbwa3 c.55.1.6 (A:406-607) A 6.0 50 0.0036 12.7 -0.2 13 63-75 52-64 (202)
8 d1fvia2 d.142.2.1 (A:2-189) AT 5.4 87 0.0063 11.4 2.4 10 73-82 20-29 (188)
9 d1lt7a_ c.1.26.1 (A:) Betaine- 5.2 81 0.0059 11.6 0.4 17 22-38 11-27 (361)
10 d2hoea3 c.55.1.10 (A:72-199) N 3.6 1.2E+02 0.0088 10.6 4.1 26 59-84 1-27 (128)
No 1
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.07 E-value=43 Score=13.03 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=17.3
Q ss_pred EEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 5674211115079997037706960
Q gi|255764502|r 63 FILGLDIKRYPIMIDVKRDGEIRVQ 87 (100)
Q Consensus 63 filgldikrypimidvkrdgeirvq 87 (100)
.+-|- .-+-|+-+.+..||+++|.
T Consensus 96 ~i~~r-~v~~~~~V~v~~dG~i~V~ 119 (122)
T d1nr3a_ 96 RIVHR-VVKSDFEIGVTRDGEIIVD 119 (122)
T ss_dssp SCCCC-CSSSCEEEEESSSSSEEEE
T ss_pred HHCCC-EEEEEEEEEECCCCEEEEE
T ss_conf 75277-4510179998579749997
No 2
>d1y4ja1 d.169.1.7 (A:28-294) Sulfatase modifying factor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.56 E-value=22 Score=14.60 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=12.9
Q ss_pred HHHHHHCCCCEEEEEE
Q ss_conf 7988720210567421
Q gi|255764502|r 53 TVMVLIPKAEFILGLD 68 (100)
Q Consensus 53 tvmvlipkaefilgld 68 (100)
|-||.||...|++|-+
T Consensus 1 ~~mV~IpgG~f~mG~~ 16 (267)
T d1y4ja1 1 TSMVQLQGGRFLMGTN 16 (267)
T ss_dssp CCEEEECCEEEEESCC
T ss_pred CCCEEECCCEEECCCC
T ss_conf 9861978957877899
No 3
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.13 E-value=38 Score=13.34 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=28.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1336860489713213200121059999999999996798
Q gi|255764502|r 16 RSKGNRNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVM 55 (100)
Q Consensus 16 rskgnrnltildgrmnselqstslvglvlvlfiiligtvm 55 (100)
-|-||||. .|||++....+-|..-.+|.---+-|++-
T Consensus 530 V~S~NRNF---eGR~g~~~~~~yLaSP~lVaA~AiaG~I~ 566 (629)
T d2b3ya2 530 VLSGNRNF---EGRVHPNTRANYLASPPLVIAYAIAGTIR 566 (629)
T ss_dssp EESSSCCC---TTSSCTTCSEEEECCHHHHHHHHHHCBSC
T ss_pred ECCCCCCC---CCCCCCCCCCEEECCHHHHHHHHHCEEEE
T ss_conf 51628898---86789998986989999999998215455
No 4
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=7.09 E-value=24 Score=14.45 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHHHCCCCEEEEEECCCCEEE
Q ss_conf 679887202105674211115079
Q gi|255764502|r 52 GTVMVLIPKAEFILGLDIKRYPIM 75 (100)
Q Consensus 52 gtvmvlipkaefilgldikrypim 75 (100)
-+|||++-+.+----+|.+||--+
T Consensus 21 ~~VmVi~N~n~~~~~ldl~Rf~E~ 44 (83)
T d1h3ga2 21 KRIMVAMNNNDKPMTLPTARFQEM 44 (83)
T ss_dssp EEEEEEEECSSSCEEEEGGGGHHH
T ss_pred CEEEEEECCCCCCEEECHHHHHHH
T ss_conf 889999879996578778998987
No 5
>d1z70x1 d.169.1.7 (X:1086-1371) Sulfatase modifying factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.80 E-value=34 Score=13.57 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=13.2
Q ss_pred HHHHHHCCCCEEEEEEC
Q ss_conf 79887202105674211
Q gi|255764502|r 53 TVMVLIPKAEFILGLDI 69 (100)
Q Consensus 53 tvmvlipkaefilgldi 69 (100)
.-||.||-.+|.+|-+-
T Consensus 4 ~~mv~IpgG~f~mGs~~ 20 (286)
T d1z70x1 4 SKMVPIPAGVFTMGTDD 20 (286)
T ss_dssp TCEEEECCEEEEESCSS
T ss_pred CCCEEECCCEEECCCCC
T ss_conf 89548569678728998
No 6
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=6.22 E-value=48 Score=12.80 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=9.1
Q ss_pred EEEEEECCCCEEE
Q ss_conf 5674211115079
Q gi|255764502|r 63 FILGLDIKRYPIM 75 (100)
Q Consensus 63 filgldikrypim 75 (100)
+-|.-||||||.-
T Consensus 52 ~~lAE~IKkyPla 64 (203)
T d2d0oa3 52 RYLAEEIKKYPLA 64 (203)
T ss_dssp HHHHHHHHHSCEE
T ss_pred HHHHHHHHHCCHH
T ss_conf 7889987436244
No 7
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.02 E-value=50 Score=12.70 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=9.0
Q ss_pred EEEEEECCCCEEE
Q ss_conf 5674211115079
Q gi|255764502|r 63 FILGLDIKRYPIM 75 (100)
Q Consensus 63 filgldikrypim 75 (100)
+-|.-||||||..
T Consensus 52 ~~lAE~IKkyPla 64 (202)
T d1nbwa3 52 LSLAEAIKKYPLA 64 (202)
T ss_dssp HHHHHHHHHSCEE
T ss_pred HHHHHHHHHCCHH
T ss_conf 7899987326244
No 8
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]}
Probab=5.43 E-value=87 Score=11.40 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=3.3
Q ss_pred EEEEEEECCC
Q ss_conf 0799970377
Q gi|255764502|r 73 PIMIDVKRDG 82 (100)
Q Consensus 73 pimidvkrdg 82 (100)
|.++..|-||
T Consensus 20 p~~~e~K~DG 29 (188)
T d1fvia2 20 PCLATPKIAG 29 (188)
T ss_dssp SEEEEECCCS
T ss_pred CEEEEECCCC
T ss_conf 6798865164
No 9
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.16 E-value=81 Score=11.57 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 04897132132001210
Q gi|255764502|r 22 NLTILDGRMNSELQSTS 38 (100)
Q Consensus 22 nltildgrmnselqsts 38 (100)
...||||-|-.|||...
T Consensus 11 ~ililDGgmGteL~~rG 27 (361)
T d1lt7a_ 11 EIVIGDGGFVFALEKRG 27 (361)
T ss_dssp CCEECCTTHHHHHHHHT
T ss_pred CEEEEECHHHHHHHHCC
T ss_conf 97999788899999779
No 10
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=3.60 E-value=1.2e+02 Score=10.62 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCCCEEEEEECCCCEEEEEEE-CCCEE
Q ss_conf 021056742111150799970-37706
Q gi|255764502|r 59 PKAEFILGLDIKRYPIMIDVK-RDGEI 84 (100)
Q Consensus 59 pkaefilgldikrypimidvk-rdgei 84 (100)
|.+.|++|.|+.+--+.+-+- -+|++
T Consensus 1 P~~~~~igidig~~~i~~~l~d~~G~i 27 (128)
T d2hoea3 1 PNCAYVLGIEVTRDEIAACLIDASMNI 27 (128)
T ss_dssp GGGCEEEEEEECSSEEEEEEEETTCCE
T ss_pred CCCEEEEEEEECCCEEEEEEECCCCCE
T ss_conf 995799999999999999999599989
Done!