RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764502|ref|YP_003064963.2| hypothetical protein
CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
         (100 letters)



>gnl|CDD|31189 COG0848, ExbD, Biopolymer transport protein [Intracellular
           trafficking and secretion].
          Length = 137

 Score = 28.3 bits (63), Expect = 0.53
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 28  GRMNSELQSTSLVGLVLVLFIILIGTVMVLIPKAEFIL------GLDIKRYPIMIDVKRD 81
               SE+  T L+ ++LVL II + T   +    +  L           + PI++ V  D
Sbjct: 10  DEEKSEINVTPLIDVMLVLLIIFMVTAPFITQSIKVDLPKASAKPAPQDKKPIIVSVDAD 69

Query: 82  GEIRVQGQQVLLNEITKKI 100
           G+I +  + V L E+   +
Sbjct: 70  GQIYLNDKPVSLEELEAAL 88


>gnl|CDD|145552 pfam02472, ExbD, Biopolymer transport protein ExbD/TolR.  This
           group of proteins are membrane bound transport proteins
           essential for ferric ion uptake in bacteria. The Pfam
           family consists of ExbD, and TolR which are involved in
           TonB-dependent transport of various receptor bound
           substrates including colicins.
          Length = 128

 Score = 28.0 bits (63), Expect = 0.58
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 27  DGRMNSELQSTSLVGLVLVLFII-LIGTVMVLIPKAEFIL------GLDIKRYPIMIDVK 79
                 E+  T L+ +V +L I  ++    +     +  L          ++  ++I V 
Sbjct: 1   RKEEEPEINLTPLIDVVFLLLIFFMVTATFIKESVLKVELPSASSTAPVEEKEELIISVD 60

Query: 80  RDGEIRVQGQQVLLNEITKKI 100
            DG+I + G+ V L E+  K+
Sbjct: 61  ADGKIYLDGEPVDLEELEAKL 81


>gnl|CDD|153329 cd07645, I-BAR_IMD_BAIAP2L1, Inverse (I)-BAR, also known as the
           IRSp53/MIM homology Domain (IMD), of Brain-specific
           Angiogenesis Inhibitor 1-Associated Protein 2-Like 1.
           The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs
           (I-BAR) domain, is a dimerization and lipid-binding
           module that bends membranes and induces membrane
           protrusions. BAIAP2L1 (Brain-specific Angiogenesis
           Inhibitor 1-Associated Protein 2-Like 1) is also known
           as IRTKS (Insulin Receptor Tyrosine Kinase Substrate).
           It is widely expressed, serves as a substrate for the
           insulin receptor, and binds the small GTPase Rac. It
           plays a role in regulating the actin cytoskeleton and
           colocalizes with F-actin, cortactin, VASP, and vinculin.
           BAIAP2L1 expression leads to the formation of short
           actin bundles, distinct from filopodia-like protrusions
           induced by the expression of the related protein IRSp53.
           It contains an N-terminal IMD, an SH3 domain, and a WASP
           homology 2 (WH2) actin-binding motif at the C-terminus.
           The IMD domain of BAIAP2L1 binds and bundles actin
           filaments, and binds the small GTPase Rac.
          Length = 226

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 5   RSQEGIRKIRSRSKGNRNLTILDGRMNSELQSTS 38
           +SQ  ++KIR +S+G RN +  + + N  L++ +
Sbjct: 130 KSQADLKKIRRKSQGRRNASKYEHKENEYLETVT 163


>gnl|CDD|30039 cd01296, Imidazolone-5PH,
           Imidazolonepropionase/imidazolone-5-propionate hydrolase
           (Imidazolone-5PH) catalyzes the third step in the
           histidine degradation pathway, the hydrolysis of
           (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
           N-formimidoyl-L-glutamate. In bacteria, the enzyme is
           part of histidine utilization (hut) operon..
          Length = 371

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 52  GTVMVLIPKAEFILGLDIKRYPIMID 77
           GTV VL+P   F L         +ID
Sbjct: 251 GTVAVLLPGTAFSLRETYPPARKLID 276


>gnl|CDD|37144 KOG1933, KOG1933, KOG1933, Cholesterol transport protein
           (Niemann-Pick C disease protein) [Lipid transport and
           metabolism].
          Length = 1201

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 21  RNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPKAEFILGLD 68
           + L  + G +   L     VG    L I     ++ +IP     +G+D
Sbjct: 581 KVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVD 628


>gnl|CDD|133146 cd05479, RP_DDI, RP_DDI; retropepsin-like domain of DNA damage
           inducible protein.  The family represents the
           retropepsin-like domain of DNA damage inducible protein.
           DNA damage inducible protein has a retropepsin-like
           domain and an amino-terminal ubiquitin-like domain
           and/or a UBA (ubiquitin-associated) domain. This CD
           represents the retropepsin-like domain of DDI.
          Length = 124

 Score = 24.8 bits (55), Expect = 5.3
 Identities = 9/21 (42%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 62  EFILGLDI-KRYPIMIDVKRD 81
           +F++GLD+ KR+  +ID+K +
Sbjct: 100 DFLIGLDMLKRHQCVIDLKEN 120


>gnl|CDD|37740 KOG2529, KOG2529, KOG2529, Pseudouridine synthase [Translation,
           ribosomal structure and biogenesis].
          Length = 395

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 51  IGTVMVLIPKAEFILGLDIKRYPIMIDVKRDGEIR 85
           +   + L  K E + G   +R P++  VKR   +R
Sbjct: 142 VEDALKLHQKLEHLYGALFQRPPLISAVKRVLRVR 176


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.144    0.380 

Gapped
Lambda     K      H
   0.267   0.0840    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,094,556
Number of extensions: 50937
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 6,263,737
Length adjustment: 68
Effective length of query: 32
Effective length of database: 4,794,325
Effective search space: 153418400
Effective search space used: 153418400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)