RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764502|ref|YP_003064963.2| hypothetical protein
CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
         (100 letters)



>gnl|CDD|180160 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 573

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 41  GLVLVL-FIILIGTVMVLIPKAEFILGLDI-KRYP 73
           GL L L   + IG  +VL+P  +  L LD  K++P
Sbjct: 276 GLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP 310


>gnl|CDD|181903 PRK09490, metH, B12-dependent methionine synthase; Provisional.
          Length = 1229

 Score = 24.8 bits (55), Expect = 5.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 68  DIKRYPIMID 77
           DI R PIMID
Sbjct: 428 DIARVPIMID 437


>gnl|CDD|173552 PTZ00359, PTZ00359, hypothetical protein; Provisional.
          Length = 443

 Score = 24.4 bits (53), Expect = 6.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 41  GLVLVLFIILIGTVMVL 57
           G+  +LF++L+ T++ L
Sbjct: 323 GIFALLFLLLVSTLIAL 339


>gnl|CDD|177997 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
          Length = 302

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 6/30 (20%)

Query: 63 FILGLDIKRYPIMIDVKR--DGEIRVQGQQ 90
            LGL++ +    I +KR  DGEI VQ Q+
Sbjct: 9  CYLGLELGK----ITIKRFADGEIYVQLQE 34


>gnl|CDD|151015 pfam10438, Cyc-maltodext_C, Cyclo-malto-dextrinase C-terminal
          domain.  This domain is at the very C-terminus of
          cyclo-malto-dextrinase proteins and consists of 8 beta
          strands, is largely globular and appears to help
          stabilize the acitve sites created by upstream domains,
          Cyc-maltodext_N pfam09087, and Alpha-amylase pfam00128.
          Cyclo-malto-dextrinases hydrolyse cyclodextrans to
          maltose and glucose and catalyse trans-glycosylation of
          oligosaccharides to the C3-, C4- or C6-hydroxyl groups
          of various acceptor sugar molecules.
          Length = 78

 Score = 24.1 bits (53), Expect = 9.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 53 TVMVLIPKAEFILGLDIKRYPIMIDVKRDGEIRVQGQQVLLNE 95
          TVMV++ K +  + LD+KR+  ++     G+  + G+ + L +
Sbjct: 22 TVMVILNKNDKEVTLDLKRFKEVLKGATSGKDILTGKTIDLGD 64


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.144    0.380 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,560,545
Number of extensions: 89029
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 31
Length of query: 100
Length of database: 5,994,473
Length adjustment: 67
Effective length of query: 33
Effective length of database: 4,546,737
Effective search space: 150042321
Effective search space used: 150042321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)