Query gi|255764503|ref|YP_003064954.2| hypothetical protein CLIBASIA_02140 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 16:26:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764503.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ww9_B Protein transport prot 49.4 13 0.00037 18.8 2.5 23 13-35 45-67 (80) 2 >2flq_A Nitric oxide synthase; 46.8 4.8 0.00014 20.8 0.0 14 26-39 167-180 (208) 3 >2wwb_B SEC61gamma, protein tr 41.2 11 0.00032 19.2 1.1 24 13-36 31-54 (68) 4 >1rh5_B Preprotein translocase 35.9 27 0.00081 17.2 2.5 23 13-35 32-54 (74) 5 >1qle_D Cytochrome AA3, ccytoc 12.4 1.3E+02 0.0038 14.0 2.5 22 1-22 8-29 (43) 6 >1m56_D Cytochrome C oxidase; 11.6 1.4E+02 0.004 13.9 2.5 22 1-22 16-37 (51) 7 >1f0z_A THis protein; ubiquiti 7.8 80 0.0024 15.0 -0.4 23 1-23 1-23 (66) 8 >2dbg_A MNDA, myeloid cell nuc 6.1 2.4E+02 0.0072 12.6 1.3 14 4-17 23-36 (103) 9 >2vty_A Protein F1, F1L; BCL-2 5.8 1.6E+02 0.0046 13.6 0.2 10 33-43 82-91 (104) 10 >1mjt_A Nitric-oxide synthase 5.4 1.8E+02 0.0054 13.2 0.3 16 26-41 154-169 (184) No 1 >>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B (B:) Probab=49.36 E-value=13 Score=18.84 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHH Q ss_conf 66765689999898971102165 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMF 35 (44) Q Consensus 13 feffkistlvavgflfcpfngmf 35 (44) =||.+|+..+++||+.--|-|.+ T Consensus 45 kEf~~ia~a~~iGf~imG~IGf~ 67 (80) T 2ww9_B 45 KEYTKIVKAVGIGFIAVGIIGYA 67 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999989999999999 No 2 >>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus} (A:1-126,A:195-242,A:342-375) Probab=46.77 E-value=4.8 Score=20.85 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=10.9 Q ss_pred HHHHCHHHHHHHHH Q ss_conf 89711021655644 Q gi|255764503|r 26 FLFCPFNGMFTLIE 39 (44) Q Consensus 26 flfcpfngmftlie 39 (44) |--||||||-|-|- T Consensus 167 y~aaPFNG~~~~i~ 180 (208) T 2flq_A 167 YMAAPFNGATTHIF 180 (208) T ss_dssp ESCCCEECGGSGGG T ss_pred ECCCCCCCCCCHHH T ss_conf 23466442345177 No 3 >>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (B:) Probab=41.16 E-value=11 Score=19.17 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 667656899998989711021655 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMFT 36 (44) Q Consensus 13 feffkistlvavgflfcpfngmft 36 (44) -||-||+..+++||+.--|-|.+- T Consensus 31 kEf~kia~a~~iGf~imG~iGf~i 54 (68) T 2wwb_B 31 KEFQKIAMATAIGFAIMGFIGFFV 54 (68) T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998499999999998 No 4 >>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (B:) Probab=35.85 E-value=27 Score=17.21 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHH Q ss_conf 66765689999898971102165 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMF 35 (44) Q Consensus 13 feffkistlvavgflfcpfngmf 35 (44) -||.+|+..+++||+.--|-|.+ T Consensus 32 ~Ef~~iak~~~iGf~imG~IGf~ 54 (74) T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYI 54 (74) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999 No 5 >>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (D:) Probab=12.40 E-value=1.3e+02 Score=13.98 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=15.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9523474563366676568999 Q gi|255764503|r 1 MDINVNDKEFQMFEFFKISTLV 22 (44) Q Consensus 1 mdinvndkefqmfeffkistlv 22 (44) |||.+..|.|.-|--|-+-+.+ T Consensus 8 MDit~QEkTF~GFik~~t~~~i 29 (43) T 1qle_D 8 MDIRHQQATFAGFIKGATWVSI 29 (43) T ss_dssp SCCHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 5338889999899999999999 No 6 >>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:) Probab=11.61 E-value=1.4e+02 Score=13.85 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=15.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9523474563366676568999 Q gi|255764503|r 1 MDINVNDKEFQMFEFFKISTLV 22 (44) Q Consensus 1 mdinvndkefqmfeffkistlv 22 (44) |||.+..|.|.-|--|-+-+.+ T Consensus 16 MDit~QEkTF~GFik~~t~~~i 37 (51) T 1m56_D 16 MDITQQEKTFAGFVRMVTWAAV 37 (51) T ss_dssp SCCHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 3237889999899999999999 No 7 >>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} (A:) Probab=7.79 E-value=80 Score=14.96 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=16.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 95234745633666765689999 Q gi|255764503|r 1 MDINVNDKEFQMFEFFKISTLVA 23 (44) Q Consensus 1 mdinvndkefqmfeffkistlva 23 (44) |.|.+|+++.+.-+-..++.|++ T Consensus 1 m~I~iNg~~~~~~~~~tl~~lL~ 23 (66) T 1f0z_A 1 MQILFNDQAMQCAAGQTVHELLE 23 (66) T ss_dssp CCEEESSCEECCCTTCCHHHHHH T ss_pred CEEEECCEEEECCCCCCHHHHHH T ss_conf 99999993878799999999998 No 8 >>2dbg_A MNDA, myeloid cell nuclear differentiation antigen; interferon induction, DNA-binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=6.07 E-value=2.4e+02 Score=12.62 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=10.6 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 34745633666765 Q gi|255764503|r 4 NVNDKEFQMFEFFK 17 (44) Q Consensus 4 nvndkefqmfeffk 17 (44) +.++.||++|.++- T Consensus 23 ~L~~~efk~FK~~L 36 (103) T 2dbg_A 23 LMDDYHFTSIKSLL 36 (103) T ss_dssp TCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 42199999999999 No 9 >>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.1A {Vaccinia virus} (A:79-182) Probab=5.79 E-value=1.6e+02 Score=13.57 Aligned_cols=10 Identities=80% Similarity=1.139 Sum_probs=7.2 Q ss_pred HHHHHHHHCCC Q ss_conf 16556440014 Q gi|255764503|r 33 GMFTLIESHTI 43 (44) Q Consensus 33 gmftlieshti 43 (44) .||||. |||| T Consensus 82 kmftll-shti 91 (104) T 2vty_A 82 KMFTLL-SHTI 91 (104) T ss_dssp HHHHHH-HHHH T ss_pred HHHHHH-HHHH T ss_conf 999987-3324 No 10 >>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} (A:1-113,A:178-225,A:325-347) Probab=5.36 E-value=1.8e+02 Score=13.23 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=9.8 Q ss_pred HHHHCHHHHHHHHHHC Q ss_conf 8971102165564400 Q gi|255764503|r 26 FLFCPFNGMFTLIESH 41 (44) Q Consensus 26 flfcpfngmftliesh 41 (44) |.-|||||-++---.| T Consensus 154 y~aaPFnG~~~~~~~~ 169 (184) T 1mjt_A 154 YPTAPFNGTLTSNYHH 169 (184) T ss_dssp ESCCCEECGGSGGGGS T ss_pred ECCCCCCCCCCHHHHH T ss_conf 4235654345547777 Done!