Query gi|255764503|ref|YP_003064954.2| hypothetical protein CLIBASIA_02140 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 19:58:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764503.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ww9_B Protein transport prote 56.2 5.9 0.00025 19.7 2.5 24 13-36 45-68 (80) 2 2wwb_B SEC61gamma, protein tra 43.2 6.7 0.00028 19.4 1.1 24 13-36 31-54 (68) 3 3mp7_B Preprotein translocase 35.5 20 0.00083 17.2 2.5 24 13-36 28-51 (61) 4 1rh5_B Preprotein translocase 29.0 29 0.0012 16.3 2.5 23 13-35 32-54 (74) 5 1m56_D Cytochrome C oxidase; m 10.9 1E+02 0.0042 13.7 1.8 18 1-18 16-33 (51) 6 1qle_D Cytochrome AA3, ccytoch 7.8 1.4E+02 0.0058 13.1 2.5 17 1-17 8-24 (43) 7 1f0z_A THis protein; ubiquitin 5.3 93 0.0039 13.9 -0.4 23 1-23 1-23 (66) 8 3hw5_A Polymerase acidic prote 3.8 2.5E+02 0.011 11.8 2.3 36 6-41 31-71 (261) 9 1z96_A DNA-damage, UBA-domain 3.7 1.9E+02 0.008 12.4 0.2 10 17-26 7-16 (40) 10 2vty_A Protein F1, F1L; BCL-2, 3.5 2.1E+02 0.0087 12.2 0.2 10 33-43 160-169 (182) No 1 >2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B Probab=56.22 E-value=5.9 Score=19.68 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 667656899998989711021655 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMFT 36 (44) Q Consensus 13 feffkistlvavgflfcpfngmft 36 (44) -||-||+..+++||+.--|-|.|- T Consensus 45 kEf~kia~at~iGf~imG~IGf~I 68 (80) T 2ww9_B 45 KEYTKIVKAVGIGFIAVGIIGYAI 68 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999899999999999 No 2 >2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Probab=43.23 E-value=6.7 Score=19.42 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 667656899998989711021655 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMFT 36 (44) Q Consensus 13 feffkistlvavgflfcpfngmft 36 (44) -||-||+..+|+||+.--|-|.|- T Consensus 31 kEf~ki~~a~~iGf~imG~iGf~v 54 (68) T 2wwb_B 31 KEFQKIAMATAIGFAIMGFIGFFV 54 (68) T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998499999999998 No 3 >3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Probab=35.54 E-value=20 Score=17.17 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH Q ss_conf 667656899998989711021655 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMFT 36 (44) Q Consensus 13 feffkistlvavgflfcpfngmft 36 (44) -||.+++...++||+.--|-|.+- T Consensus 28 ~Ef~~i~k~~~iG~~i~G~iGf~I 51 (61) T 3mp7_B 28 ATYKRAAKITGLGIILIGLIGMLI 51 (61) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999 No 4 >1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B Probab=28.99 E-value=29 Score=16.33 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHH Q ss_conf 66765689999898971102165 Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMF 35 (44) Q Consensus 13 feffkistlvavgflfcpfngmf 35 (44) -||.+++..+++||+.--+-|.+ T Consensus 32 ~Ef~~i~k~~~iG~~i~G~IGf~ 54 (74) T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYI 54 (74) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999 No 5 >1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D* Probab=10.90 E-value=1e+02 Score=13.75 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=13.5 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 952347456336667656 Q gi|255764503|r 1 MDINVNDKEFQMFEFFKI 18 (44) Q Consensus 1 mdinvndkefqmfeffki 18 (44) |||.+..|.|.-|--|-. T Consensus 16 MDi~~QEkTFdgFik~~t 33 (51) T 1m56_D 16 MDITQQEKTFAGFVRMVT 33 (51) T ss_dssp SCCHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 323788999989999999 No 6 >1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1 Probab=7.81 E-value=1.4e+02 Score=13.09 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=13.0 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 95234745633666765 Q gi|255764503|r 1 MDINVNDKEFQMFEFFK 17 (44) Q Consensus 1 mdinvndkefqmfeffk 17 (44) |||.+..|.|.-|--|- T Consensus 8 MDi~~QEkTF~gFik~~ 24 (43) T 1qle_D 8 MDIRHQQATFAGFIKGA 24 (43) T ss_dssp SCCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 53388899998999999 No 7 >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Probab=5.26 E-value=93 Score=13.90 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=15.9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 95234745633666765689999 Q gi|255764503|r 1 MDINVNDKEFQMFEFFKISTLVA 23 (44) Q Consensus 1 mdinvndkefqmfeffkistlva 23 (44) |.|.+|+++++.-+-..+..|+. T Consensus 1 M~I~vNg~~~~~~~~~tl~~ll~ 23 (66) T 1f0z_A 1 MQILFNDQAMQCAAGQTVHELLE 23 (66) T ss_dssp CCEEESSCEECCCTTCCHHHHHH T ss_pred CEEEECCEEEECCCCCCHHHHHH T ss_conf 99999994888699999999998 No 8 >3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A Probab=3.82 E-value=2.5e+02 Score=11.80 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=26.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHC Q ss_conf 745633666765689999898971102-----165564400 Q gi|255764503|r 6 NDKEFQMFEFFKISTLVAVGFLFCPFN-----GMFTLIESH 41 (44) Q Consensus 6 ndkefqmfeffkistlvavgflfcpfn-----gmftliesh 41 (44) .|.+.|--.|+.|.+-..|-|.+|-|+ |--|.|||. T Consensus 31 edpki~~~~~~~Ic~HlevC~m~sd~~fide~G~st~~e~~ 71 (261) T 3hw5_A 31 EDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESTIIESG 71 (261) T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHC----------------- T ss_pred CCCCCCHHHHHHHHHHHEEEEEEECCEEECCCCCEEECCCC T ss_conf 88431156899987451245776123010347851110268 No 9 >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Probab=3.74 E-value=1.9e+02 Score=12.40 Aligned_cols=10 Identities=60% Similarity=1.065 Sum_probs=6.8 Q ss_pred HHHHHHHHHH Q ss_conf 5689999898 Q gi|255764503|r 17 KISTLVAVGF 26 (44) Q Consensus 17 kistlvavgf 26 (44) ||..||..|| T Consensus 7 kiaqlvsmgf 16 (40) T 1z96_A 7 KIAQLVSMGF 16 (40) T ss_dssp HHHHHHHTTC T ss_pred HHHHHHHCCC T ss_conf 9999998178 No 10 >2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus} Probab=3.48 E-value=2.1e+02 Score=12.24 Aligned_cols=10 Identities=80% Similarity=1.139 Sum_probs=7.0 Q ss_pred HHHHHHHHCCC Q ss_conf 16556440014 Q gi|255764503|r 33 GMFTLIESHTI 43 (44) Q Consensus 33 gmftlieshti 43 (44) .||||. |||| T Consensus 160 kmftll-shti 169 (182) T 2vty_A 160 KMFTLL-SHTI 169 (182) T ss_dssp HHHHHH-HHHH T ss_pred HHHHHH-HHHH T ss_conf 999987-3324 Done!