BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254547855|gb|ACT56990.2| DNA-methyltransferase MKpn2kI [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 101

 Score =  211 bits (537), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG
Sbjct: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI
Sbjct: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101


>gi|319407456|emb|CBI81106.1| Cytosine-specific methyltransferase NlaX [Bartonella sp. 1-1C]
          Length = 307

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 80/101 (79%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFGVPQ RER+YI+ FL+ S  FKFP+P+ IK R+GDIL+  +D+K TISN LW G
Sbjct: 147 LKARDFGVPQNRERIYIVGFLDHSTNFKFPSPMNIKTRVGDILDNDVDEKYTISNTLWHG 206

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  NK+ GKGFGYGLF   S  TNTLSARYYKDGSEI
Sbjct: 207 HQRRKAQNKLNGKGFGYGLFNMESPYTNTLSARYYKDGSEI 247


>gi|313667524|ref|YP_004047808.1| cytosine-specific methyltransferase [Neisseria lactamica ST-640]
 gi|309378245|emb|CBX23130.1| DNA cytosine methyltransferase M.NlaX [Neisseria lactamica
           Y92-1009]
 gi|313004986|emb|CBN86414.1| cytosine-specific methyltransferase [Neisseria lactamica 020-06]
          Length = 313

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 HQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|127471|sp|P24581|MTNX_NEILA RecName: Full=Cytosine-specific methyltransferase NlaX;
           Short=M.NlaX
 gi|45004|emb|CAA38357.1| cytosine-specific methyltransferase of NlaIII [Neisseria lactamica]
          Length = 313

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +Q+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 YQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|261400948|ref|ZP_05987073.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209191|gb|EEZ75646.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 313

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +Q+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 YQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|315637499|ref|ZP_07892709.1| modification methylase EcoRII [Arcobacter butzleri JV22]
 gi|315478217|gb|EFU68940.1| modification methylase EcoRII [Arcobacter butzleri JV22]
          Length = 326

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ RER+YII FL+ S++FK+P PL  K RLGDIL++++DDK TIS+KLW G
Sbjct: 163 LNAKDFGVPQNRERIYIIAFLDHSIDFKYPKPLNKKNRLGDILDDNVDDKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK+ +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKKEHKEKGNGFGYSLFTHNSEYTSTISARYYKDGSEI 263


>gi|150026187|ref|YP_001297013.1| type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772728|emb|CAL44211.1| Probable type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 335

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 83/101 (82%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA +FG+PQ RER+YI+ FL+ S++FKFPTP  +  ++GDILE+ +D+K TIS++LWEG
Sbjct: 152 LKAKEFGLPQNRERIYIVGFLDNSIKFKFPTPTKLPTKVGDILEQKVDEKYTISDRLWEG 211

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  NK  GKGFG+G+  ENS  TNT+SARYYKDGSEI
Sbjct: 212 HQRRKIANKEKGKGFGFGIVNENSEYTNTISARYYKDGSEI 252


>gi|119026301|ref|YP_910146.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765885|dbj|BAF40064.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 383

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A DFGVPQ RER+YI+ F    V    +FK+P P  I  RLGDILE+++DDK TIS+ 
Sbjct: 214 LAAKDFGVPQNRERIYIVGFDKEQVPNWADFKYPEPPCIPTRLGDILEKNVDDKYTISDA 273

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GHQ+RK+ NK AGKGFGYGLF E+S   NT+SARYYKDGSEI
Sbjct: 274 LWAGHQRRKQENKKAGKGFGYGLFDEDSPYANTISARYYKDGSEI 318


>gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 379

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName:
           Full=Cytosine-specific methyltransferase SsoII
 gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4]
          Length = 379

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae]
          Length = 379

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|323968851|gb|EGB64187.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 282

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 118 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 177

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 178 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 220


>gi|157737722|ref|YP_001490405.1| DNA (cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|157699576|gb|ABV67736.1| DNA (Cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 326

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 78/101 (77%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FGVPQ RER+YII FL+ S++FK+P  L  K RLGDIL+ ++DDK TIS+KLW G
Sbjct: 163 LNARNFGVPQNRERIYIIAFLDHSIDFKYPKSLNKKNRLGDILDNNVDDKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK+ +K  G GFGY LF   S  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKKEHKEKGNGFGYSLFTHESEYTSTISARYYKDGSEI 263


>gi|462657|sp|P34877|MTSA_LACLC RecName: Full=Modification methylase ScrFIA; Short=M.ScrFI-A;
           Short=M.ScrFIA; AltName: Full=Cytosine-specific
           methyltransferase ScrFIA
 gi|149493|gb|AAA25220.1| SCRFI methylase [Lactococcus lactis]
 gi|2327034|gb|AAB66696.1| 5-methyl-cytosine methyltransferase [Lactococcus lactis subsp.
           cremoris]
          Length = 389

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 79/104 (75%), Gaps = 4/104 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           KA DFG+PQ RER+YI+ F   S+    +F+ PTPL  K R+G+ILE  +DDK TIS+KL
Sbjct: 221 KARDFGLPQNRERIYIVGFDRKSISNYSDFQMPTPLQEKTRVGNILESVVDDKYTISDKL 280

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W+GHQ+RK  NK  GKGFGY LF ++S  TNTLSARYYKDGSEI
Sbjct: 281 WDGHQRRKTENKKNGKGFGYTLFNQDSEYTNTLSARYYKDGSEI 324


>gi|78777762|ref|YP_394077.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498302|gb|ABB44842.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 328

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 78/101 (77%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ RER+YI+ FL+  VEF+FP P+    ++GDILE+ +D+K TIS+KLW G
Sbjct: 163 LNAKDYGVPQNRERIYIVGFLDNEVEFEFPKPIEKYVKVGDILEDKVDEKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  +K  G GFGY +F ENS  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKIEHKAKGNGFGYSMFNENSIYTSTISARYYKDGSEI 263


>gi|50914506|ref|YP_060478.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|40218542|gb|AAR83196.1| type II modification methylase [Streptococcus pyogenes]
 gi|50261587|gb|AAT72355.1| methylase [Streptococcus pyogenes]
 gi|50903580|gb|AAT87295.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|114386439|gb|ABI74454.1| DNA methyltransferase [Streptococcus pyogenes]
          Length = 408

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
            KA DFGVPQ RER+YI+ F    +N   EF+FP P  ++ +LG+IL+  +D+K TIS+K
Sbjct: 242 FKARDFGVPQNRERIYIVGFDKTCVNNFSEFRFPEPFHLETKLGNILQTDVDEKYTISDK 301

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGHQ+RK  +K  G GFGY LF  +S  TNTLSARYYKDGSEI
Sbjct: 302 LWEGHQRRKAEHKTKGNGFGYSLFNADSPYTNTLSARYYKDGSEI 346


>gi|152998369|ref|YP_001343204.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
 gi|150839293|gb|ABR73269.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
          Length = 417

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +K+ DFGVPQ R+R+YI+ + +  ++ F +P  +G+  R+GDILE + + K TIS++LWE
Sbjct: 255 LKSVDFGVPQNRQRIYIVLWKDGEIDKFDYPESMGLDTRVGDILEANPNPKLTISDRLWE 314

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           GHQ+RK  NKI GKGFGYG+  E+S  TNT+SARYYKDGSE+
Sbjct: 315 GHQRRKMQNKINGKGFGYGIVTEDSPYTNTISARYYKDGSEV 356


>gi|224418923|ref|ZP_03656929.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253827874|ref|ZP_04870759.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313142438|ref|ZP_07804631.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253511280|gb|EES89939.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313131469|gb|EFR49086.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 328

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 73/101 (72%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ RER+ I+ F + +V F FP P     +LGDILE+  D+K TISN+LWE 
Sbjct: 164 LNARDYGVPQNRERIIIVGFKDHNVHFDFPKPYNYSVKLGDILEKTPDEKYTISNRLWES 223

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RKE  K  G GFGY LF ENS  T+T+SARYYKDGSEI
Sbjct: 224 HQQRKELQKAKGNGFGYRLFDENSPYTSTISARYYKDGSEI 264


>gi|283471715|emb|CAQ50926.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 397

 Score =  120 bits (301), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFG PQ RER+YI+ F    ++    F FP PL I+  LG ILE +++DK TIS++
Sbjct: 227 LRARDFGCPQNRERIYIVGFDKQQIKNAENFSFPEPLPIETSLGSILESNVNDKYTISDR 286

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GHQ+RK  +K  G GFGY +F E S  TNTLSARYYKDGSEI
Sbjct: 287 LWYGHQRRKREHKAKGNGFGYSIFNETSPYTNTLSARYYKDGSEI 331


>gi|325989685|ref|YP_004249384.1| cytosine-specific methyltransferase [Mycoplasma suis KI3806]
 gi|323574770|emb|CBZ40430.1| Cytosine-specific methyltransferase [Mycoplasma suis]
          Length = 326

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +K+ DFG+PQ RER+YI+ F    VE    F  P+P      +GDILE+ +++K TIS+ 
Sbjct: 160 LKSRDFGIPQNRERIYIVGFNKDLVESYENFSMPSPTLKATCVGDILEKEVNNKYTISDL 219

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RKE +K+ G+GFG+ LF ENS+ TNT+SARYYKDGSEI
Sbjct: 220 LWEGHKRRKEEHKLKGRGFGFSLFSENSSYTNTISARYYKDGSEI 264


>gi|321310755|ref|YP_004193084.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802599|emb|CBY93245.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 362

 Score =  119 bits (299), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 72/105 (68%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFGVPQ RER+YI+ F   +V+    FKFP        LGDILE  +DDK TISN 
Sbjct: 196 LRARDFGVPQNRERIYIVGFDKDAVQGYRNFKFPEATHKNTCLGDILESEVDDKYTISNT 255

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RK  NK  GKGFGY LF   S   NTLSARYYKDGSE+
Sbjct: 256 LWEGHKRRKVENKKKGKGFGYSLFNFESPYANTLSARYYKDGSEV 300


>gi|325973250|ref|YP_004250314.1| cytosine-specific DNA modification methylase, HpaII-like protein
           [Mycoplasma suis str. Illinois]
 gi|323651852|gb|ADX97934.1| cytosine-specific DNA modification methylase, HpaII-like protein
           [Mycoplasma suis str. Illinois]
          Length = 326

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +K+ DFG+PQ RER+YI+ F    VE    F  P+P      +GDILE+ +++K TIS+ 
Sbjct: 160 LKSRDFGIPQNRERIYIVGFNKDLVESYENFSMPSPTLKATCVGDILEKEVNNKYTISDL 219

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RKE +K+ G+GFG+ LF ENS+ TNT+SARYYKDGSEI
Sbjct: 220 LWEGHKRRKEEHKLKGRGFGFSLFSENSSYTNTISARYYKDGSEI 264


>gi|299536257|ref|ZP_07049570.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
 gi|298728243|gb|EFI68805.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
          Length = 403

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN----PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFGVPQ RER++++ F        V FKFP PL     LGDIL + +D+K TIS+K
Sbjct: 212 LRAADFGVPQNRERVFMVGFNKRIGGELVPFKFPKPLSTPTNLGDILFKKVDEKYTISDK 271

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           L+EGH +RKE +K  G GFG+ LF ENS+ TNTLSARYYKDGSEI
Sbjct: 272 LYEGHLRRKEMHKQKGNGFGFSLFDENSSYTNTLSARYYKDGSEI 316


>gi|315931535|gb|EFV10502.1| DNA (cytosine-5) methyltransferase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 284

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 75/106 (70%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFL-----NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FG+PQ RER+YI+ FL     N S  F     + IK +LGDILE+++D+K TIS+
Sbjct: 151 LNARNFGIPQNRERIYIVAFLKNKFKNISFNFNELKNIEIKSKLGDILEKNVDEKYTISD 210

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 211 KLWAGHQRRKLEHKKKGNGFGYSLFNHNSDYTSTISARYYKDGSEI 256


>gi|157414453|ref|YP_001481709.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283955585|ref|ZP_06373079.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|157385417|gb|ABV51732.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283792928|gb|EFC31703.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 321

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 75/106 (70%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFL-----NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FG+PQ RER+YI+ FL     N S  F     + IK +LGDILE+++D+K TIS+
Sbjct: 151 LNARNFGIPQNRERIYIVAFLKNKFKNISFNFNELKNIEIKSKLGDILEKNVDEKYTISD 210

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 211 KLWAGHQRRKLEHKKKGNGFGYSLFNHNSDYTSTISARYYKDGSEI 256


>gi|255066464|ref|ZP_05318319.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298369378|ref|ZP_06980696.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|255049344|gb|EET44808.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298283381|gb|EFI24868.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 357

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           M A DF +PQ RER+YI+ F +   + +F+FP PL    ++GDILE   D K TIS++LW
Sbjct: 190 MAAKDFNLPQNRERIYIVGFRSAKDAAQFEFPHPLPKTVKVGDILESFPDAKYTISDRLW 249

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +GH +RK  +K  G GFGYGLF   S  TNT+SARYYKDGSEI
Sbjct: 250 QGHLRRKAEHKQKGNGFGYGLFNAQSEYTNTISARYYKDGSEI 292


>gi|170729237|ref|YP_001763263.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169814584|gb|ACA89168.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 416

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           M++ DFGVPQ R+R+YII + +  +E F++P P G   ++ DILE    +K TIS+KLW 
Sbjct: 255 MRSVDFGVPQNRQRIYIILWKDGLIEQFQYPKPSGKDTKVADILESEPCEKLTISDKLWA 314

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           GH++RK  NK  GKGFGYGL    S  TNT+SARYYKDGSEI
Sbjct: 315 GHKRRKIENKAKGKGFGYGLVSPESEYTNTISARYYKDGSEI 356


>gi|256760956|ref|ZP_05501536.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
 gi|256682207|gb|EEU21902.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
          Length = 405

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 4/104 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           KA DFG PQ RER+YI+ F   S++    F+FPT    K  +GDILE+ +D+K TIS+ L
Sbjct: 237 KARDFGAPQNRERIYIVGFDKLSLKNIDLFEFPTAPKPKTCVGDILEDSVDEKYTISDTL 296

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           WEGH++RK  +K  G GFG+ LF  +S  TNT+SARYYKDGSEI
Sbjct: 297 WEGHKRRKLEHKEKGNGFGFSLFNSSSPYTNTISARYYKDGSEI 340


>gi|1709152|sp|P50185|MTD5_DACSA RecName: Full=Modification methylase DsaV; Short=M.DsaV; AltName:
           Full=Cytosine-specific methyltransferase DsaV
 gi|505694|gb|AAA86046.1| DsaV methyltransferase [Dactylococcopsis salina]
          Length = 351

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 76/104 (73%), Gaps = 3/104 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DF +PQ+RER++I+ F    N ++ F FP P+ +  ++GD+LE+ +D+K TI++++
Sbjct: 146 ISATDFNLPQKRERIFIVGFQDKNNKNLIFDFPKPIELTAKVGDLLEKEVDEKYTITDRM 205

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           WEGHQ RK+ ++  G GFG+ L   NS+ T T+SARYYKDGSE+
Sbjct: 206 WEGHQNRKKAHRKRGNGFGFSLVNRNSSYTRTISARYYKDGSEV 249


>gi|262402975|ref|ZP_06079535.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
 gi|262350474|gb|EEY99607.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
          Length = 410

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDF-------LNPSVEFKFPTPLGIKPRLGDILE-EHI----- 47
           ++A DFGVPQ RER++I+ F       +N    F +P       R+GDILE +H+     
Sbjct: 216 LRAADFGVPQNRERIFIVGFDKNYFRGVNFDSLFSWPEAPKTPTRVGDILEPQHVLDEEK 275

Query: 48  ----DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                D+ TIS+KLW+GH+KRKE +KI G GFGY LF  +S  TNT+SARYYKDGSEI
Sbjct: 276 QALGKDRYTISDKLWDGHKKRKEEHKIKGNGFGYSLFNADSEYTNTISARYYKDGSEI 333


>gi|319893523|ref|YP_004150398.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163219|gb|ADV06762.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +KA DFGVPQ RER+YI+ F    +    ++  P P   +  LG ILE+++D+K TIS+K
Sbjct: 227 LKAKDFGVPQNRERIYIVGFDKRRIKKWRDYIPPKPPKSQTLLGKILEKNVDEKYTISDK 286

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GH++RK  +K+ G GFG+ L+   S  TNTLSARYYKDGSEI
Sbjct: 287 LWSGHKRRKAEHKLKGNGFGFTLYNGESPYTNTLSARYYKDGSEI 331


>gi|260554958|ref|ZP_05827179.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
 gi|260411500|gb|EEX04797.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
          Length = 413

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 74/114 (64%), Gaps = 13/114 (11%)

Query: 1   MKACDFGVPQRRERLYIIDF--------LNPSVEFKFPTPLGIKPRLGDILEE-----HI 47
           ++A DFGVPQ RER++++ F         N    F +P P   + RLGDILE+       
Sbjct: 222 LRAADFGVPQNRERIFLVGFDKNYFGEECNFDQLFSWPVPPKKQTRLGDILEDVSKLKKS 281

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +D  TIS++LW+GHQ+RKE + I G GFGY L+  +S  TNTLSARYYKDGSEI
Sbjct: 282 EDVYTISDRLWQGHQRRKEEHGIKGNGFGYTLYTGDSPYTNTLSARYYKDGSEI 335


>gi|124024750|ref|YP_001013866.1| site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
 gi|123959818|gb|ABM74601.1| Site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
          Length = 305

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 76/101 (75%), Gaps = 1/101 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ RER++I  +++  + F+FP P  ++ ++GDIL++++ DK T+S+K+W  
Sbjct: 146 LNAKDFGVPQNRERIFIFGYID-FIFFEFPEPSKVQTKVGDILDDNVPDKFTLSDKMWTN 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             +RKENN+  G GFG+ LF ++S  T+T+SARYYKDGSEI
Sbjct: 205 AIRRKENNRKRGYGFGFSLFDKDSEYTSTISARYYKDGSEI 245


>gi|229530048|ref|ZP_04419438.1| type II restriction-modification system methylation subunit [Vibrio
           cholerae 12129(1)]
 gi|229333822|gb|EEN99308.1| type II restriction-modification system methylation subunit [Vibrio
           cholerae 12129(1)]
          Length = 270

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 73/118 (61%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEF----KFPTPLGIKPRLGDILEE-------- 45
           ++A DFG PQ RER++II F     P+++F     +P       R+GDIL+         
Sbjct: 76  LRAADFGSPQNRERIFIIGFNKDEFPNIDFDKLFSWPKAPKTPTRVGDILQTQQELELDK 135

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             H  D+ TIS+KLWEGHQKRK  +K  G GFGY LF  +S  TNT+SARYYKDGSEI
Sbjct: 136 KLHGKDRFTISDKLWEGHQKRKAEHKTKGNGFGYSLFNADSEYTNTISARYYKDGSEI 193


>gi|323495143|ref|ZP_08100228.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
 gi|323310583|gb|EGA63762.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
          Length = 443

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 72/118 (61%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDF-------LNPSVEFKFPTPLGIKPRLGDILEEHID----- 48
           ++A DFGVPQ RER++II F       ++    F +P P     ++GDIL+   +     
Sbjct: 248 LRAADFGVPQNRERIFIIGFDKDYYTGVDFDQVFNWPEPPKTPTKVGDILQSDQELEAEA 307

Query: 49  -----DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                D  TIS++LWEGHQKRKE +K  G GFGY L+   S  TNT+SARYYKDGSEI
Sbjct: 308 KVIGKDCYTISDRLWEGHQKRKEGHKTKGNGFGYTLYNAESEYTNTISARYYKDGSEI 365


>gi|294788070|ref|ZP_06753314.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
 gi|294484363|gb|EFG32046.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKP--RLGDILEEHIDDKSTISN 55
           + A +FGVPQ RER+YI+      NP+    F      K   ++GDIL+  +D+K TIS+
Sbjct: 184 LNAKNFGVPQNRERIYIVAIRNDFNPTFNLDFDKLKNTKVNCQVGDILQNQVDEKYTISD 243

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +   G GFGY LF   S  T+T+SARYYKDGSEI
Sbjct: 244 KLWAGHQRRKAEHIEKGNGFGYSLFNAQSPYTSTISARYYKDGSEI 289


>gi|66391578|ref|YP_239103.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
 gi|62288666|gb|AAX78649.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
          Length = 302

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 67/96 (69%), Gaps = 2/96 (2%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKR 64
           DFG+PQRRER++I+ FL+  V F FP P     R+GDILE+ +DD  T+S+  W+G ++R
Sbjct: 148 DFGLPQRRERVFIVCFLD-DVFFSFPVPPRTPTRVGDILED-VDDSYTLSDNAWKGFRER 205

Query: 65  KENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           KE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 206 KERNKANGKGFGYQAVTADSTHTGTITAQYYKDGVQ 241


>gi|294661528|ref|YP_003579981.1| hypothetical protein KP-KP15_gp115 [Klebsiella phage KP15]
 gi|292660689|gb|ADE34937.1| hypothetical protein [Klebsiella phage KP15]
          Length = 308

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           M   DFG+PQRRER++I+ F +P V F FP P     R+GDILE   +D+ TIS++ W+G
Sbjct: 144 MNTKDFGLPQRRERVFIVCFRDP-VFFSFPVPPRTPTRVGDILEPD-NDQYTISDRAWKG 201

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            ++RKE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 202 FRERKELNKANGKGFGYQAVTVDSVCTGTITAQYYKDGVQ 241


>gi|237725529|ref|ZP_04556010.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D4]
 gi|229436216|gb|EEO46293.1| DNA (cytosine-5-)-methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 374

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 22/123 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLG-----------------IKPRLG 40
           + A  FGVPQ RERL+I+ +    V+   FKFP  +                  IK ++ 
Sbjct: 166 LNAKYFGVPQNRERLFIVAWYKDIVKATTFKFPYGIAPDGSTIYEKSKDLGDKVIKTKVS 225

Query: 41  DILE--EHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDG 98
           DI E  + ID   TIS++LW GHQ+RK+ NK  GKGFGY LF ENS  ++T+SARY+KDG
Sbjct: 226 DIFEPEDSIDSYYTISDRLWIGHQERKKRNKANGKGFGYSLFNENSVYSSTISARYWKDG 285

Query: 99  SEI 101
           SEI
Sbjct: 286 SEI 288


>gi|304373674|ref|YP_003858419.1| putative DNA-methyltransferase, type II restriction-modification
           system [Enterobacteria phage RB16]
 gi|299829630|gb|ADJ55423.1| putative DNA-methyltransferase, type II restriction-modification
           system [Enterobacteria phage RB16]
          Length = 302

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKR 64
           DFG+PQRRER++I+ FL+  V F FP P     R+GDILE+  DD  T+S+  W+G ++R
Sbjct: 148 DFGLPQRRERVFIVCFLD-DVFFSFPVPPRTPTRVGDILEDA-DDSYTLSDNAWKGFRER 205

Query: 65  KENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           KE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 206 KERNKANGKGFGYQAVTADSTHTGTITAQYYKDGVQ 241


>gi|317497297|ref|ZP_07955620.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895366|gb|EFV17525.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 385

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-----EFKFPT-PLGIKPRLGDILEEHIDDKSTIS 54
           + A  FG+PQ RER+ I+ F    +     +FK+P   +  K  +GDILE+ + ++ TIS
Sbjct: 213 LNAYHFGIPQNRERIIIVGFNKDYLPKKFKDFKYPVGKIDKKVCVGDILEKEVGERFTIS 272

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           +KLWEGHQ RK  +K  G GFG+ LF ++S  T+T+SARYYKDGSE
Sbjct: 273 DKLWEGHQARKRMHKKKGNGFGFCLFNKDSKYTSTISARYYKDGSE 318


>gi|308126237|ref|ZP_05908633.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107574|gb|EFO45114.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 426

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 8/108 (7%)

Query: 1   MKACDFGVPQRRERLYIIDF-------LNPSVEFKFPTPLGIKPRLGDILE-EHIDDKST 52
           ++A DFG PQ RER+Y++ F       L+ +  F+FP P     ++GDILE     D  T
Sbjct: 248 LRAADFGAPQNRERIYLVGFDKDYFGDLDFNSIFQFPEPTMKPTKVGDILETSDYVDSFT 307

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           IS+K+W  HQKRK  +K  G GFG+ L    +  TNT+SARYYKDGSE
Sbjct: 308 ISDKIWASHQKRKAGHKNKGNGFGFTLVNSETKYTNTISARYYKDGSE 355


>gi|17863973|gb|AAL46998.1|AF448250_2 putative C-5 cytosine-specific DNA methylase [Bacteroides coprosuis
           DSM 18011]
          Length = 401

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 67/110 (60%), Gaps = 10/110 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--------FKFPTPLGIKPRLGDILEE--HIDDK 50
           + A DFG PQ RER+YI+ F              F+FP P   K  + D+LE+    D  
Sbjct: 237 LNAKDFGSPQNRERIYIVGFNKNHFTKIDDFNEIFQFPEPSKEKVSVKDVLEKIPANDTI 296

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            TIS ++W+GHQKRK  ++  G GFG+ LF ENS  TNT+SARYYKDGSE
Sbjct: 297 YTISERIWQGHQKRKLKHQNKGNGFGFSLFNENSEYTNTISARYYKDGSE 346


>gi|260909972|ref|ZP_05916659.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635922|gb|EEX53925.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 370

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 20/121 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIK----------------PRLGD 41
           + A  FGVPQ RERL+II +    V+   FKFP  + I                  ++ +
Sbjct: 166 LNAKYFGVPQNRERLFIIAWNRELVDVDCFKFPYGIAIDGTSIYEKRKLKGRTIPTKVSE 225

Query: 42  ILE-EHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           I E +++    TI++++WEGH+ RKE NK+ GKGFGY LF  NS  T+T+SARY+KDGSE
Sbjct: 226 IFEPDNVTTPFTITDRMWEGHKTRKERNKMNGKGFGYSLFNANSEYTSTISARYWKDGSE 285

Query: 101 I 101
           I
Sbjct: 286 I 286


>gi|228469904|ref|ZP_04054843.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
 gi|228308539|gb|EEK17327.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
          Length = 395

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 21/122 (17%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPL----------------GIKPRLGD 41
           + A  FGVPQ RERL+I+ +   L  +  F FP  +                 I+ ++ D
Sbjct: 188 LNAKYFGVPQNRERLFIVAWSKDLISADRFLFPYGIDAEGNTIYDKQMAKRCAIRTKVSD 247

Query: 42  ILE-EHID-DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
           I E + I+ D  TIS+++W GHQ RK+ N++ GKGFGY  F  NS  T+T+SARY+KDGS
Sbjct: 248 IFEPQSIERDGFTISDRMWLGHQTRKKRNRLNGKGFGYSKFTGNSVYTSTISARYWKDGS 307

Query: 100 EI 101
           EI
Sbjct: 308 EI 309


>gi|304387412|ref|ZP_07369603.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
 gi|304338505|gb|EFM04624.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
          Length = 336

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ LW   Q 
Sbjct: 177 VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDNLWLYLQN 236

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + +K  G GFG+GL  +    + TLSARYYKDGSEI
Sbjct: 237 YAKKHKAKGNGFGFGL-VDLDGISRTLSARYYKDGSEI 273


>gi|166368844|ref|YP_001661117.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
 gi|166091217|dbj|BAG05925.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
          Length = 338

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           VPQ R+R++I+ F  PS  F FP    I P++ DILE  +D K T+++ LW+  QK  + 
Sbjct: 158 VPQNRKRIFIVGFEKPS-RFMFPEIPDIHPKIKDILEGEVDSKYTLTDHLWDYLQKYADK 216

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +K  G GFGYGL         TLSARYYKDGSEI
Sbjct: 217 HKEKGNGFGYGL-VNLEGIARTLSARYYKDGSEI 249


>gi|325130344|gb|EGC53110.1| modification methylase EcoRII [Neisseria meningitidis OX99.30304]
          Length = 337

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ LW   Q 
Sbjct: 177 VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDNLWLYLQN 236

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + +K  G GFG+GL  +    + TLSARYYKDGSEI
Sbjct: 237 YAKKHKAKGNGFGFGL-VDLDGISRTLSARYYKDGSEI 273


>gi|255262721|ref|ZP_05342063.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
 gi|255105056|gb|EET47730.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
          Length = 421

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 13/114 (11%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPL--GIK-----PRLGDILEEH--I 47
           + A +FGVPQ RER+YI+ F    ++ +     P  +  G+K      RLGD+LE +  +
Sbjct: 243 LAAKNFGVPQNRERVYIVGFDRDQVSEAEARDLPREILDGLKERKSETRLGDVLETNASV 302

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           D K TIS++L  GH++R   ++  G GFG+ LF   S   NT+SARYYKDGSE+
Sbjct: 303 DPKFTISDRLLAGHERRLRAHRAKGNGFGFSLFNAESPYCNTISARYYKDGSEV 356


>gi|15677157|ref|NP_274310.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|161870164|ref|YP_001599334.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis 053442]
 gi|218768314|ref|YP_002342826.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|7226530|gb|AAF41666.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|121052322|emb|CAM08652.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|161595717|gb|ABX73377.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis 053442]
 gi|254670478|emb|CBA06174.1| putative DNA modification methylase [Neisseria meningitidis
           alpha153]
 gi|308389411|gb|ADO31731.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
           alpha710]
 gi|316984080|gb|EFV63058.1| modification methylase SsoII [Neisseria meningitidis H44/76]
 gi|319410559|emb|CBY90927.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134466|gb|EGC57111.1| modification methylase EcoRII [Neisseria meningitidis M13399]
 gi|325136204|gb|EGC58812.1| modification methylase EcoRII [Neisseria meningitidis M0579]
 gi|325140483|gb|EGC63004.1| modification methylase EcoRII [Neisseria meningitidis CU385]
 gi|325144567|gb|EGC66866.1| modification methylase EcoRII [Neisseria meningitidis M01-240013]
 gi|325200082|gb|ADY95537.1| modification methylase EcoRII [Neisseria meningitidis H44/76]
 gi|325201996|gb|ADY97450.1| modification methylase EcoRII [Neisseria meningitidis M01-240149]
 gi|325205934|gb|ADZ01387.1| modification methylase EcoRII [Neisseria meningitidis M04-240196]
 gi|325208252|gb|ADZ03704.1| modification methylase EcoRII [Neisseria meningitidis NZ-05/33]
          Length = 337

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ LW   Q 
Sbjct: 177 VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDNLWLYLQN 236

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + +K  G GFG+GL  +    + TLSARYYKDGSEI
Sbjct: 237 YAKKHKAKGNGFGFGL-VDLDGISRTLSARYYKDGSEI 273


>gi|118576810|ref|YP_876553.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118195331|gb|ABK78249.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 325

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 2/94 (2%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           VPQ RERL+I+ F +  VEF+FP     KPRL DILE     +  ++  +W   ++ KE 
Sbjct: 159 VPQHRERLFIVGF-DREVEFEFPKMKNAKPRLRDILEPDPGSEYVLTPGVWAALKRHKEA 217

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  G GFGYG+  +    T TLS RYYKDGSEI
Sbjct: 218 CRARGAGFGYGI-ADPDGVTRTLSRRYYKDGSEI 250


>gi|238922589|ref|YP_002936102.1| modification methylase [Eubacterium rectale ATCC 33656]
 gi|238874261|gb|ACR73968.1| modification methylase [Eubacterium rectale ATCC 33656]
          Length = 392

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 6/99 (6%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           VPQ RER+ I+ F        +EF F  TP+  KP + DILE+ +DDK T+S+ LW   Q
Sbjct: 220 VPQHRERIIIVGFDMERYGDDIEFDFDITPVNPKPVMRDILEKKVDDKYTLSDNLWTYLQ 279

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                ++ AG GFGYG+       + T+SARY+KDGSEI
Sbjct: 280 NYAAKHRAAGNGFGYGI-APLDGVSRTISARYHKDGSEI 317


>gi|312898460|ref|ZP_07757850.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
 gi|310620379|gb|EFQ03949.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
          Length = 400

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           VPQ RER+ I+ F        + F+F   P+  KP +  ILE  +DDK T+++KLW   Q
Sbjct: 208 VPQHRERILIVGFDRKRYGRDIGFRFSIAPVNPKPAIKAILETKVDDKYTLTDKLWTYLQ 267

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                ++ AG GFGYG+   N   + TLSARYYKDGSEI
Sbjct: 268 NYAAKHRAAGNGFGYGIADPN-GVSRTLSARYYKDGSEI 305


>gi|323486195|ref|ZP_08091524.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|323400521|gb|EGA92890.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 382

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 6/99 (6%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           VPQ RER+ I+ F        ++F F  TP   KP + DIL++ +D+K T+S+KLW   Q
Sbjct: 210 VPQHRERIIIVGFDRERYGQDIKFDFEITPAIPKPVMKDILDKKVDEKYTLSDKLWIYLQ 269

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                +K AG GFGYG+       + T+SARYYKDGSEI
Sbjct: 270 SYAAKHKAAGNGFGYGI-APLDGVSRTISARYYKDGSEI 307


>gi|237713924|ref|ZP_04544405.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262409168|ref|ZP_06085712.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
 gi|229446080|gb|EEO51871.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262352915|gb|EEZ02011.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
          Length = 361

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F     +   +F FP        + +ILE  IDDK T+S+KLW   Q 
Sbjct: 186 VPQHRERIMIVGFNREIFHGEEQFCFPEQKQSTRGIREILESDIDDKYTLSDKLWSYLQN 245

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 246 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 282


>gi|294646710|ref|ZP_06724334.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294807186|ref|ZP_06766001.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|292637950|gb|EFF56344.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294445609|gb|EFG14261.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 445

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F     +   +F FP        + +ILE  IDDK T+S+KLW   Q 
Sbjct: 270 VPQHRERIMIVGFNREIFHGEEQFCFPEQKQSTRGIREILESDIDDKYTLSDKLWSYLQN 329

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 330 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 366


>gi|313158099|gb|EFR57504.1| putative DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 431

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDFLN---PSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F N     VE FKFP    +  ++ +ILE  +D K T+++KLW   Q 
Sbjct: 267 VPQHRERIMIVGFRNNLFHGVEKFKFPELKDVSHKIRNILEPEVDPKYTLTDKLWVYLQN 326

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + ++ +G GFG+GL  +      TLSARYYKDGSEI
Sbjct: 327 YAKKHQDSGNGFGFGL-VDLDGIARTLSARYYKDGSEI 363


>gi|296282358|ref|ZP_06860356.1| DNA-cytosine methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 439

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLWEGH 61
           VPQ+RER++I+ F   S       + P  +   P+LG ILE H  +D K T++ +LWE  
Sbjct: 250 VPQKRERIFIVGFREKSAFNLAGLEIPA-VADGPKLGSILEPHDQVDPKYTLTPRLWEYL 308

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q+ ++ ++  G GFGY LF        TLSARY+KDGSEI
Sbjct: 309 QEYRKKHEAKGNGFGYSLFGPGD-VARTLSARYHKDGSEI 347


>gi|85709931|ref|ZP_01040996.1| Type II restriction-modification system methylation subunit
           [Erythrobacter sp. NAP1]
 gi|85688641|gb|EAQ28645.1| Type II restriction-modification system methylation subunit
           [Erythrobacter sp. NAP1]
          Length = 370

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 10/111 (9%)

Query: 1   MKACDFGVPQRRERLYIIDF-------LNPSVEFKFPTPLGIKPRLGDILEEHIDD---K 50
           + A +FGVPQ+RER+YI+ F       ++ +  F      G   RLGD LE    +   +
Sbjct: 184 LAATEFGVPQKRERVYIVGFDRDHFGNIDANDVFAQLERGGHPTRLGDALEPEGANSLAR 243

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            TIS+KLW G  +R   ++  G GFG+ +F  +    NT+++RYYKDG EI
Sbjct: 244 YTISDKLWSGLIRRMARHEAKGNGFGHKVFNYDDPYCNTITSRYYKDGREI 294


>gi|53714966|ref|YP_100958.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
 gi|52217831|dbj|BAD50424.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
          Length = 431

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+    D  +   +F FP        + +IL+  ID K T+S+KLW   Q 
Sbjct: 270 VPQHRERIMIVGFNQDVFHGKEQFAFPEQKQSTRSIKEILDPDIDGKYTLSDKLWSYLQN 329

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 330 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 366


>gi|210631776|ref|ZP_03297018.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
 gi|210159896|gb|EEA90867.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
          Length = 390

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 6/95 (6%)

Query: 10  QRRERLYIIDFLNPSVEFKFP---TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKE 66
           Q RER+YI+ F +  V+F +     P   + +  +ILE  +DD+  +S+KLW   +  K 
Sbjct: 231 QHRERIYIVGFRD-DVDFSWDDLDCPQNGQ-KAAEILETDVDDRYVLSDKLWSYLKAYKA 288

Query: 67  NNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            ++ AG GFGYGL    S TT TLSARY+KDGSEI
Sbjct: 289 KHEAAGNGFGYGL-ITPSDTTRTLSARYHKDGSEI 322


>gi|167035739|ref|YP_001670970.1| DNA cytosine methylase [Pseudomonas putida GB-1]
 gi|166862227|gb|ABZ00635.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
          Length = 447

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 16/105 (15%)

Query: 8   VPQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
            PQ RER+ ++ F           L    E  FP     +P LGDIL+E +DDK  ++ K
Sbjct: 261 TPQHRERIVLVGFRKDLGVHSGFTLKDIAEL-FPKK---RPALGDILDEKVDDKYILTPK 316

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW+        +K  G GFG+GL  + S+ T TLSARYYKDGSEI
Sbjct: 317 LWQYLFNYAIKHKAKGNGFGFGLVGK-SSVTRTLSARYYKDGSEI 360


>gi|296114735|ref|ZP_06833385.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978659|gb|EFG85387.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 419

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT----PLGIKPRLGDILEEH--IDDKSTISNKLWEGH 61
           VPQ+RER++I+ F     +F   +    P+   PRLG IL  H  ++ K T++  LW   
Sbjct: 230 VPQKRERIFIVGF-REKTDFDLKSLVVPPIEKGPRLGSILLPHAEVEPKYTLTEHLWNYL 288

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K  +  AG GFG+GL   +     TLSARY+KDGSEI
Sbjct: 289 QNYKAKHAAAGNGFGFGLCGPDD-VARTLSARYFKDGSEI 327


>gi|86136173|ref|ZP_01054752.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
 gi|85827047|gb|EAQ47243.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
          Length = 399

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 58/116 (50%), Gaps = 24/116 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKF-----PTPLGIKPRLGDIL--------------EEH-- 46
           VPQ RER++I  F    V  +F       P G  PRL DIL              E H  
Sbjct: 207 VPQHRERIFISGFRR-DVPTRFCLDDVVIPPGPNPRLSDILHPENGSEIAEPPYTEGHLA 265

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            I DK T+S+KLW   Q     +K AG GFG+GL    S    TLSARYYKDGSEI
Sbjct: 266 RIADKYTLSDKLWAYLQNYAAKHKAAGNGFGFGLCTPES-VARTLSARYYKDGSEI 320


>gi|94501925|ref|ZP_01308434.1| DNA-cytosine methyltransferase [Oceanobacter sp. RED65]
 gi|94425919|gb|EAT10918.1| DNA-cytosine methyltransferase [Oceanobacter sp. RED65]
          Length = 287

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 9/102 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEF---KFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           +PQ RER+ ++ F   LN +  F     P P  + P L  +LE+ +D+K  ++ +LWE  
Sbjct: 94  LPQHRERIVLVGFRKDLNLTNRFTLTNLPKPREV-PSLSSLLEKSVDEKYVLTPRLWEYL 152

Query: 62  QKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
            +  + ++  G GFGYGL     +SA   TLSARY+KDGSEI
Sbjct: 153 YEYAKKHQAKGNGFGYGLVDPKNSSAVCRTLSARYHKDGSEI 194


>gi|239621327|ref|ZP_04664358.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515788|gb|EEQ55655.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 343

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 10/100 (10%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKP----RLGDIL--EEHIDDKSTISNKLWEGH 61
           VPQ RER YI+ F   +  F F     +KP     +G IL     + DK  +S+KLW   
Sbjct: 185 VPQHRERTYIVGFREEN-GFTFDD---VKPIAHGNVGSILLPASQVPDKYVLSDKLWTYL 240

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 241 QNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 280


>gi|189439219|ref|YP_001954300.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|189427654|gb|ACD97802.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 323

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 10/100 (10%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKP----RLGDIL--EEHIDDKSTISNKLWEGH 61
           VPQ RER YI+ F   +  F F     +KP     +G IL     + DK  +S+KLW   
Sbjct: 165 VPQHRERTYIVGFREEN-GFTFDD---VKPIAHGNVGSILLPASQVPDKYVLSDKLWTYL 220

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 221 QNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 260


>gi|46191283|ref|ZP_00120453.2| COG0270: Site-specific DNA methylase [Bifidobacterium longum
           DJO10A]
          Length = 315

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 10/100 (10%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKP----RLGDIL--EEHIDDKSTISNKLWEGH 61
           VPQ RER YI+ F   +  F F     +KP     +G IL     + DK  +S+KLW   
Sbjct: 157 VPQHRERTYIVGFREEN-GFTFDD---VKPIAHGNVGSILLPASQVPDKYVLSDKLWTYL 212

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 213 QNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 252


>gi|23466029|ref|NP_696632.1| modification methylase very EcoRII
           (cytosine-specificmethyltransferase [Bifidobacterium
           longum NCC2705]
 gi|23326750|gb|AAN25268.1| modification methylase very similar to EcoRII
           (cytosine-specificmethyltransferase [Bifidobacterium
           longum NCC2705]
          Length = 323

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 10/100 (10%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKP----RLGDIL--EEHIDDKSTISNKLWEGH 61
           VPQ RER YI+ F   +  F F     +KP     +G IL     + DK  +S+KLW   
Sbjct: 165 VPQHRERTYIVGFREEN-GFTFDD---VKPIAHGNVGSILLPASQVPDKYVLSDKLWTYL 220

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 221 QNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 260


>gi|56751653|ref|YP_172354.1| hypothetical protein syc1644_d [Synechococcus elongatus PCC 6301]
 gi|81301269|ref|YP_401477.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
 gi|56686612|dbj|BAD79834.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170150|gb|ABB58490.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 424

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 22/114 (19%)

Query: 8   VPQRRERLYIIDFLNPSVEF---KFPTPLGIKPRLGDIL-----------------EEHI 47
           VPQ RER+YI+ F    V F    F  P      + DIL                 E  +
Sbjct: 234 VPQHRERIYIVGF-REEVGFNWDSFSQPPTDTKCMADILHPNDGSEEVEEPYTVGIEAKV 292

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +DK T+S+KLW   Q     ++ AG GFG+GL  ++S    TLSARYYKDGSEI
Sbjct: 293 NDKYTLSDKLWNYLQNYANKHRAAGNGFGFGLVNKDS-IARTLSARYYKDGSEI 345


>gi|114571596|ref|YP_758276.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
 gi|114342058|gb|ABI67338.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
          Length = 406

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 10/102 (9%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFP------TPLGIKPRLGDILEEH--IDDKSTISNKLWE 59
           VPQ+RER++I+ F + S +F F             P L  IL+ H  I  K T++ KLW+
Sbjct: 228 VPQKRERVFIVGFRD-STDFSFEGFERLIPHASNHPTLDSILQSHNEIGQKYTLTEKLWD 286

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             Q  ++ ++  G GFGY LF  +     TLSARY+KDGSEI
Sbjct: 287 YLQAYRQKHESKGNGFGYSLFGPDD-VARTLSARYHKDGSEI 327


>gi|328947602|ref|YP_004364939.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447926|gb|AEB13642.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 431

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 59/117 (50%), Gaps = 24/117 (20%)

Query: 8   VPQRRERLYIIDFLN------------PSVEFKFPTPL----GIKPRLGDILEEHID--- 48
           VPQ RER+ I+ F N            P  E K  + L    G +PRL    +++ D   
Sbjct: 233 VPQHRERIVIVGFRNKVDFSLEDMELPPKGEVKLASILHKTDGTEPRLPQDGDKYFDFEN 292

Query: 49  ----DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
               DK T+++ LW   Q   + ++  G GFGYGL  EN     TLSARYYKDGSEI
Sbjct: 293 NKVLDKYTLTDNLWAYLQAYAQKHRSMGNGFGYGLVNEND-IARTLSARYYKDGSEI 348


>gi|261337441|ref|ZP_05965325.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
 gi|270277829|gb|EFA23683.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
          Length = 442

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 29/119 (24%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILE------------------- 44
           VPQ RER+YI+ F + +     + KFP     +P L DIL                    
Sbjct: 231 VPQHRERIYIVGFCSKTDFTWDDLKFPDH---QPILADILHKTDGTEPYLPWDGDKYFDF 287

Query: 45  EH--IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           EH  + DK T++ +LW+  Q  ++ ++  G GFGYGL   +   + TLSARY+KDGSEI
Sbjct: 288 EHQKVQDKYTLTPRLWQYLQDYRKKHEALGHGFGYGLVTPD-MVSRTLSARYHKDGSEI 345


>gi|10957343|ref|NP_058367.1| DNA cytosine methylase [Salmonella typhi]
 gi|7800396|gb|AAF69992.1|AF250878_153 EcoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|145849042|emb|CAM91602.1| ecoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 475

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 15/105 (14%)

Query: 9   PQRRERLYIIDFLN----------PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           PQ RER+ ++ F              V   +P+    +P LG++L+  +D +  +S KLW
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSR---RPTLGELLDAEVDSRYILSPKLW 334

Query: 59  EGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           E      + ++  G GFG+GL    + S    TLSARYY+DGSEI
Sbjct: 335 EYLYNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|313651376|gb|EFS15772.1| modification methylase EcoRII [Shigella flexneri 2a str. 2457T]
          Length = 463

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 15/105 (14%)

Query: 9   PQRRERLYIIDFLN----------PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           PQ RER+ ++ F              V   +P+    +P LG++L+  +D +  +S KLW
Sbjct: 266 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSR---RPTLGELLDAEVDSRYILSPKLW 322

Query: 59  EGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           E      + ++  G GFG+GL    + S    TLSARYY+DGSEI
Sbjct: 323 EYLYNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 367


>gi|18466581|ref|NP_569389.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|160431784|ref|YP_001551898.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|16505897|emb|CAD09776.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|159885325|dbj|BAF92929.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
          Length = 475

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 15/105 (14%)

Query: 9   PQRRERLYIIDFLN----------PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           PQ RER+ ++ F              V   +P+    +P LG++L+  +D +  +S KLW
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSR---RPTLGELLDAEVDSRYILSPKLW 334

Query: 59  EGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           E      + ++  G GFG+GL    + S    TLSARYY+DGSEI
Sbjct: 335 EYLYNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|260752101|ref|YP_003237616.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257767571|dbj|BAI39065.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 475

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 15/105 (14%)

Query: 9   PQRRERLYIIDFLN----------PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           PQ RER+ ++ F              V   +P+    +P LG++L+  +D +  +S KLW
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSR---RPTLGELLDAEVDSRYILSPKLW 334

Query: 59  EGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           E      + ++  G GFG+GL    + S    TLSARYY+DGSEI
Sbjct: 335 EYLYNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|212716092|ref|ZP_03324220.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661459|gb|EEB22034.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
          Length = 453

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 29/119 (24%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILE------------------- 44
           VPQ RER+YI+ F + +     + K P     KP L DIL                    
Sbjct: 242 VPQHRERIYIVGFRSHTDFTWDDLKLPEH---KPVLADILHKNDGTEPYLPWDGDRYFDY 298

Query: 45  EH--IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           EH  + DK T++ +LW+  Q  K  ++  G GFGYGL   +   + TLSARY+KDGSEI
Sbjct: 299 EHNKVQDKYTLTPRLWQYLQDYKAKHEAMGHGFGYGLVTPD-MVSRTLSARYHKDGSEI 356


>gi|148244085|ref|YP_001220322.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400648|gb|ABQ29180.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
          Length = 487

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 24/116 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKF-----PTPLGIKPRLGDILEEH---------------- 46
           VPQ RER++I  F + + EF F     P P    PRL  IL                   
Sbjct: 291 VPQHRERIFIAGFRDRNAEFTFKTLDIPDPAS-GPRLASILHPEDGTEKPDGHFTEGPLA 349

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            + ++ T+++ LW   Q   E ++ AG GFG+GL         TLSARYYKDGSEI
Sbjct: 350 TVTERYTLTDHLWNYLQNYAEKHRRAGNGFGFGLCGPED-VARTLSARYYKDGSEI 404


>gi|226942156|ref|YP_002797230.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|226717083|gb|ACO76221.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
          Length = 420

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 26/117 (22%)

Query: 9   PQRRERLYIIDFLNPSVEFKF---PTPL--------------GIKPRL---GDILEEH-- 46
           PQ RER+ I  F  P V F +   P P               G +P L   GD   +H  
Sbjct: 231 PQHRERILIAGFREP-VAFDWDAIPLPPKGSRTLRTVLHRTDGSEPVLPWDGDRFFDHQA 289

Query: 47  --IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + DK T++ KLW+  Q   E ++  G GFG+GL   +S  T TLSARYYKDGSEI
Sbjct: 290 RCVQDKYTLTPKLWDYLQAYAEKHRAKGNGFGFGLVGPDS-VTRTLSARYYKDGSEI 345


>gi|254251049|ref|ZP_04944367.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124893658|gb|EAY67538.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 530

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 56/116 (48%), Gaps = 24/116 (20%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIK------------PRL---GDILEEH--- 46
           PQ RER+ I+ F  P+       + P   GIK            PRL   GD   +H   
Sbjct: 331 PQHRERIVIVGFREPTPFSWESLQLPEKGGIKMKDILHKLDGSEPRLEHDGDRYFDHEKQ 390

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            ++DK T++  LW+  Q     +K  G GFGYGL         TLSARYYKDGSEI
Sbjct: 391 KVNDKYTLTPNLWKYLQDYAAKHKAKGNGFGYGLVGPED-IARTLSARYYKDGSEI 445


>gi|126464142|ref|YP_001045255.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105953|gb|ABN78483.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 417

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 23/116 (19%)

Query: 8   VPQRRERLYIIDF---LNPSVEF-KFPTPLGIK-PRLGDIL-----------------EE 45
           VPQ RER++I+     L+  ++  K   P G+  PR G +L                 E 
Sbjct: 222 VPQHRERIFIVGVRKDLDMKIDLSKLVLPSGVTGPRFGTVLHKEDGSELPNNRSFLDPEG 281

Query: 46  HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            + D+ T+S+KLW+  Q   E ++  G GFG+GL         TLSARY+KDGSEI
Sbjct: 282 RVSDRYTLSDKLWKYLQDYAEKHRQKGNGFGFGL-TRRGDVARTLSARYHKDGSEI 336


>gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 272

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSD 271


>gi|300899219|ref|ZP_07117494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|300357175|gb|EFJ73045.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 477

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 337 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|218695565|ref|YP_002403232.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|256022383|ref|ZP_05436248.1| DNA cytosine methylase [Escherichia sp. 4_1_40B]
 gi|218352297|emb|CAU98056.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|323972739|gb|EGB67939.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
 gi|332343686|gb|AEE57020.1| DNA-cytosine methyltransferase [Escherichia coli UMNK88]
          Length = 472

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|301029418|ref|ZP_07192512.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877722|gb|EFI85933.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 476

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|193071315|ref|ZP_03052233.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331683510|ref|ZP_08384111.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|192955357|gb|EDV85842.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331079725|gb|EGI50922.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 472

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|186476891|ref|YP_001858361.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
 gi|184193350|gb|ACC71315.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
          Length = 428

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ +I F   +     + + P      PRL  IL                     
Sbjct: 237 PQHRERIIMIGFRARTSFSWDDLRLPEE---GPRLASILHRTDGTEPVLPWDGDRFFDHA 293

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             H+  K T++ KLW   Q   + ++ AG GFGYG+ +  S  T TLSARY+KDGSEI
Sbjct: 294 ARHVQPKYTLTPKLWTYLQNYADKHRAAGNGFGYGMAYPQS-VTRTLSARYHKDGSEI 350


>gi|82776352|ref|YP_402701.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|309789422|ref|ZP_07684012.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
 gi|81240500|gb|ABB61210.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|308922816|gb|EFP68333.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
          Length = 472

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|311279100|ref|YP_003941331.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
 gi|308748295|gb|ADO48047.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
          Length = 492

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN    F      G+    +P  G++LE  +D K  ++  LW+ 
Sbjct: 293 LPQHRERIVLVGFRRDLNLHQGFSLRALPGLYPAQRPTFGELLEPTVDAKFILTPVLWKY 352

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYGL    +  +   TLSARYYKDG+EI
Sbjct: 353 LYRYAKKHQARGNGFGYGLVDPTNPDSVARTLSARYYKDGAEI 395


>gi|261340425|ref|ZP_05968283.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317516|gb|EFC56454.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 477

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F       +    +P + D+LE  +D K  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLNLMGDFTLRNLPALYPARRPTIADLLEPAVDAKFILTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFG+G+   N   + T TLSARYYKDG+EI
Sbjct: 337 LYRYAKKHQAKGNGFGFGMVNPNDPHSVTRTLSARYYKDGAEI 379


>gi|296103580|ref|YP_003613726.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058039|gb|ADF62777.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 471

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F       +    +P + D+LE  +D K  ++  LW+ 
Sbjct: 271 LPQHRERIVLVGFRRDLNLKGDFTLRDIPSLYPARRPSVADLLEPAVDAKFILTPVLWKY 330

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFG+GL   N     T TLSARYYKDG+EI
Sbjct: 331 LYRYAKKHQAKGNGFGFGLVNPNDPHCVTRTLSARYYKDGAEI 373


>gi|37524351|ref|NP_927695.1| DNA cytosine methylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783775|emb|CAE12633.1| DNA-cytosine methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 478

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        FP     +P L D+LE  +D K  ++  L
Sbjct: 281 LPQHRERIVLVGFRKDLNIHQGFTLRDISRYFPKE---RPTLADLLEPEVDSKYILTPNL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+        ++  G GFG+GL   N+  + T TLSARY+KDGSEI
Sbjct: 338 WKYLYNYARKHQAKGNGFGFGLIDPNNKDSVTRTLSARYHKDGSEI 383


>gi|163732386|ref|ZP_02139832.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
 gi|161394684|gb|EDQ19007.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
          Length = 410

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 57/114 (50%), Gaps = 22/114 (19%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDIL---------EEH--------I 47
           VPQ RER+ I+ F    V F F     P   + R+ DIL         E H        +
Sbjct: 222 VPQHRERIVIVGF-REDVPFSFDDVILPPHRERRMRDILHPENGNENPESHFTLGNDAAV 280

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             K T+S+KLW+  Q     +K  G GFG+GL  +  +   TLSARYYKDGSEI
Sbjct: 281 SGKYTLSDKLWKYLQDYAAKHKAKGNGFGFGL-VDGDSIARTLSARYYKDGSEI 333


>gi|300904853|ref|ZP_07122678.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301304244|ref|ZP_07210359.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300403236|gb|EFJ86774.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300840501|gb|EFK68261.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315257206|gb|EFU37174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 472

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + +++ G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQVRGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|237732007|ref|ZP_04562488.1| DNA cytosine methylase [Citrobacter sp. 30_2]
 gi|226907546|gb|EEH93464.1| DNA cytosine methylase [Citrobacter sp. 30_2]
          Length = 476

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F     +   P+    L ++LE  +D K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKSDFTLRDIVTRYPQRRTTLAELLEPTVDAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ +  +  + T TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPGNPDSVTRTLSARYYKDGAEI 378


>gi|188494720|ref|ZP_03001990.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
 gi|188489919|gb|EDU65022.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
          Length = 472

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   +N   +F      G  P     L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDINLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|324112381|gb|EGC06359.1| DNA-cytosine methyltransferase [Escherichia fergusonii B253]
          Length = 473

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G +LE  +D K  +S KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQ---RPLFGQLLESSVDSKYILSPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
           W+      + +   G GFG+GL   N+A +   TLSARY+KDGSEI
Sbjct: 338 WQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 383


>gi|325499566|gb|EGC97425.1| DNA cytosine methylase [Escherichia fergusonii ECD227]
          Length = 473

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G +LE  +D K  +S KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQ---RPLFGQLLESSVDSKYILSPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
           W+      + +   G GFG+GL   N+A +   TLSARY+KDGSEI
Sbjct: 338 WQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 383


>gi|291085206|ref|ZP_06352388.2| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291072321|gb|EFE10430.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 476

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   L    +F         PR    L D+LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLQLKSDFTLRNIATCYPRRRTTLADLLEPTVEAKYVLTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ +  +    T TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPGNPDCVTRTLSARYYKDGAEI 378


>gi|218551294|ref|YP_002385086.1| DNA cytosine methylase [Escherichia fergusonii ATCC 35469]
 gi|218358836|emb|CAQ91493.1| DNA modification methylase [Escherichia fergusonii ATCC 35469]
          Length = 485

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G +LE  +D K  +S KL
Sbjct: 293 LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQ---RPLFGQLLESSVDSKYILSPKL 349

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
           W+      + +   G GFG+GL   N+A +   TLSARY+KDGSEI
Sbjct: 350 WQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 395


>gi|170769440|ref|ZP_02903893.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
 gi|170121764|gb|EDS90695.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
          Length = 472

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        FPT    +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKASFTLRDINQCFPTQ---RVTLAQLLDPVVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|209520785|ref|ZP_03269531.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
 gi|209498782|gb|EDZ98891.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
          Length = 432

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     + + P      PRLG IL                     
Sbjct: 238 PQHRERIIIVGFRGETTFTWDDLRLPEQ---GPRLGAILHRKDGSEPVLPWDHDRFFDHA 294

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++ KLW   Q     ++ AG GFG+GL + +S  T TLSARY+KDGSEI
Sbjct: 295 ARRVQPKYTLTPKLWAYLQNYAAKHRAAGNGFGFGLAYPDS-VTRTLSARYHKDGSEI 351


>gi|157158517|ref|YP_001463262.1| DNA cytosine methylase [Escherichia coli E24377A]
 gi|157080547|gb|ABV20255.1| DNA-cytosine methyltransferase [Escherichia coli E24377A]
          Length = 472

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDSMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238783073|ref|ZP_04627100.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
 gi|238716074|gb|EEQ08059.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
          Length = 475

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +P  G++LE  +DDK  ++  L
Sbjct: 281 LPQHRERIVLVGFRKDLNIDKDFTLKDIHKFFPEK---RPTFGELLEPVVDDKYILTPHL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFG+GL     + +   TLSARY+KDGSEI
Sbjct: 338 WKYLYNYAKKHQAKGNGFGFGLVDPTNSDSVARTLSARYHKDGSEI 383


>gi|323186716|gb|EFZ72038.1| DNA-cytosine methyltransferase [Escherichia coli RN587/1]
          Length = 472

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|215487159|ref|YP_002329590.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967158|ref|ZP_07781376.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
 gi|215265231|emb|CAS09622.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312288622|gb|EFR16524.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
          Length = 472

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|152970972|ref|YP_001336081.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955821|gb|ABR77851.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 477

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDFLNP----------SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F              +  ++P    ++P  G++LE  +D K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYP---AVRPTFGELLEPTVDSKFILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           W+   +    ++  G GFGYGL       +   TLSARYYKDG+EI
Sbjct: 334 WKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|187923141|ref|YP_001894783.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714335|gb|ACD15559.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 426

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     + + P      PRLG IL                     
Sbjct: 232 PQHRERIIIVGFRGKTAFSWDDLRLPQD---GPRLGSILHRTDGSEPVLPWDHDRFFDHA 288

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++  LW   Q   E ++ AG GFG+G+ +  S  T TLSARY+KDGSEI
Sbjct: 289 GRRVQPKYTLTPNLWTYLQNYAEKHRAAGNGFGFGMAYPTS-VTRTLSARYHKDGSEI 345


>gi|213581465|ref|ZP_03363291.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 295

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 108 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 167

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 168 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 210


>gi|119355933|ref|YP_910577.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
 gi|119353282|gb|ABL64153.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
          Length = 425

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 57/114 (50%), Gaps = 21/114 (18%)

Query: 8   VPQRRERLYIIDFL-NPSVEF-KFPTPLG-IKPRLGDILE-----------------EHI 47
           VPQ RER++I  F  +    F +F  P G  +P +  IL                    I
Sbjct: 224 VPQHRERIFIAGFREDCGFSFDRFDLPHGNERPVIETILHPENGMEDEEPPYTVGPLARI 283

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            D+ T+S+ LWE  QK  E ++  G GFG+GL   +     TLSARYYKDGSEI
Sbjct: 284 SDRYTLSDHLWEYLQKYAEKHRAKGNGFGFGLVGPHD-VARTLSARYYKDGSEI 336


>gi|62180565|ref|YP_216982.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128198|gb|AAX65901.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715041|gb|EFZ06612.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|322616984|gb|EFY13892.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618223|gb|EFY15115.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625894|gb|EFY22713.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626346|gb|EFY23156.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632761|gb|EFY29506.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639103|gb|EFY35796.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640419|gb|EFY37075.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647220|gb|EFY43719.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648528|gb|EFY44979.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655540|gb|EFY51848.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660318|gb|EFY56556.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662999|gb|EFY59206.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668184|gb|EFY64343.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674057|gb|EFY70151.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675591|gb|EFY71665.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682998|gb|EFY79014.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686692|gb|EFY82670.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195420|gb|EFZ80600.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198052|gb|EFZ83169.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204476|gb|EFZ89482.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207566|gb|EFZ92514.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210995|gb|EFZ95855.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217551|gb|EGA02270.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323226697|gb|EGA10894.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231573|gb|EGA15686.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236016|gb|EGA20095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240586|gb|EGA24629.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245478|gb|EGA29478.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247596|gb|EGA31547.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254424|gb|EGA38240.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257764|gb|EGA41444.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262129|gb|EGA45692.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266252|gb|EGA49742.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270729|gb|EGA54168.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPGSVARTLSARYYKDGAEI 378


>gi|168462467|ref|ZP_02696398.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443436|ref|YP_002041256.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|238912436|ref|ZP_04656273.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|194402099|gb|ACF62321.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195634356|gb|EDX52708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168239231|ref|ZP_02664289.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734985|ref|YP_002115026.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204931362|ref|ZP_03222061.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194710487|gb|ACF89708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288080|gb|EDY27467.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204319845|gb|EDZ05054.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|167552776|ref|ZP_02346527.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322616|gb|EDZ10455.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|161613440|ref|YP_001587405.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205352316|ref|YP_002226117.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856496|ref|YP_002243147.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|161362804|gb|ABX66572.1| hypothetical protein SPAB_01156 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205272097|emb|CAR36949.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708299|emb|CAR32602.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627365|gb|EGE33708.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|200390041|ref|ZP_03216652.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602486|gb|EDZ01032.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168259722|ref|ZP_02681695.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205351069|gb|EDZ37700.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNISRCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|197251440|ref|YP_002146032.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215143|gb|ACH52540.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|198242597|ref|YP_002215094.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937113|gb|ACH74446.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622842|gb|EGE29187.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNISRCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|56413096|ref|YP_150171.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362022|ref|YP_002141659.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127353|gb|AAV76859.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093499|emb|CAR58960.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|224583511|ref|YP_002637309.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468038|gb|ACN45868.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168244842|ref|ZP_02669774.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449372|ref|YP_002046042.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407676|gb|ACF67895.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336375|gb|EDZ23139.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168234164|ref|ZP_02659222.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168821682|ref|ZP_02833682.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470868|ref|ZP_03076852.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263635|ref|ZP_03163709.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|194457232|gb|EDX46071.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197241890|gb|EDY24510.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331847|gb|EDZ18611.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341769|gb|EDZ28533.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085391|emb|CBY95172.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|331668651|ref|ZP_08369499.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331063845|gb|EGI35756.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 458

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 258 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 314

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 315 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 360


>gi|309795932|ref|ZP_07690345.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308120382|gb|EFO57644.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|301018179|ref|ZP_07182696.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300399832|gb|EFJ83370.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|16765328|ref|NP_460943.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993566|ref|ZP_02574660.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|16420526|gb|AAL20902.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205328427|gb|EDZ15191.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247157|emb|CBG24980.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993981|gb|ACY88866.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158505|emb|CBW18015.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912981|dbj|BAJ36955.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224636|gb|EFX49699.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130270|gb|ADX17700.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988880|gb|AEF07863.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|260855934|ref|YP_003229825.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300822269|ref|ZP_07102410.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|257754583|dbj|BAI26085.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300525152|gb|EFK46221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|309702249|emb|CBJ01566.1| DNA-cytosine methyltransferase [Escherichia coli ETEC H10407]
 gi|323937230|gb|EGB33510.1| DNA-cytosine methyltransferase [Escherichia coli E1520]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|16760934|ref|NP_456551.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141374|ref|NP_804716.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213424982|ref|ZP_03357732.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|289829483|ref|ZP_06547095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25286126|pir||AH0754 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16503231|emb|CAD05739.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137001|gb|AAO68565.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|157161430|ref|YP_001458748.1| DNA cytosine methylase [Escherichia coli HS]
 gi|157067110|gb|ABV06365.1| DNA-cytosine methyltransferase [Escherichia coli HS]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQTRGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|331653374|ref|ZP_08354379.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|331049472|gb|EGI21544.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|46581246|ref|YP_012054.1| type II DNA modification methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450667|gb|AAS97314.1| type II DNA modification methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234912|gb|ADP87766.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 358

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)

Query: 8   VPQRRERLYIIDFLNPSV-------------EFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           +PQ RER++++ F  P               +F   +  G +  L  ++E  + +K T+ 
Sbjct: 172 IPQHRERIFMVGFRLPEACPAGAQKWDVKDFDFGKVSRRGSQKDLESVIEPDVPEKYTLG 231

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
              W    + K N+   G+GFGYG+     A  TT TLSARY+KDG+EI
Sbjct: 232 PGTWNTLVRHKANHAAKGQGFGYGMITPPFAGQTTRTLSARYHKDGAEI 280


>gi|320641809|gb|EFX11197.1| DNA cytosine methylase [Escherichia coli O157:H7 str. G5101]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|307138628|ref|ZP_07497984.1| DNA cytosine methylase [Escherichia coli H736]
 gi|331642581|ref|ZP_08343716.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331039379|gb|EGI11599.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|291283137|ref|YP_003499955.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209766674|gb|ACI81649.1| DNA cytosine methylase [Escherichia coli]
 gi|290763010|gb|ADD56971.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|91211180|ref|YP_541166.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|117624099|ref|YP_853012.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218558817|ref|YP_002391730.1| DNA cytosine methylase [Escherichia coli S88]
 gi|91072754|gb|ABE07635.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|115513223|gb|ABJ01298.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218365586|emb|CAR03313.1| DNA cytosine methylase [Escherichia coli S88]
 gi|294492656|gb|ADE91412.1| DNA-cytosine methyltransferase [Escherichia coli IHE3034]
 gi|307626564|gb|ADN70868.1| DNA cytosine methylase [Escherichia coli UM146]
 gi|323952452|gb|EGB48325.1| DNA-cytosine methyltransferase [Escherichia coli H252]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323977859|gb|EGB72945.1| DNA-cytosine methyltransferase [Escherichia coli TW10509]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLREISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323962004|gb|EGB57603.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|15802395|ref|NP_288421.1| DNA cytosine methylase [Escherichia coli O157:H7 EDL933]
 gi|15831953|ref|NP_310726.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|16129907|ref|NP_416470.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108792|ref|AP_002572.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. W3110]
 gi|168752207|ref|ZP_02777229.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758275|ref|ZP_02783282.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168771615|ref|ZP_02796622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777717|ref|ZP_02802724.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783359|ref|ZP_02808366.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789321|ref|ZP_02814328.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801737|ref|ZP_02826744.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|170081604|ref|YP_001730924.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|195939267|ref|ZP_03084649.1| DNA cytosine methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810340|ref|ZP_03252216.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816602|ref|ZP_03257722.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821263|ref|ZP_03261583.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400193|ref|YP_002271076.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919382|ref|YP_002293466.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217328629|ref|ZP_03444710.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218689956|ref|YP_002398168.1| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238901165|ref|YP_002926961.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253773091|ref|YP_003035922.1| DNA cytosine methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254793611|ref|YP_003078448.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|256017846|ref|ZP_05431711.1| DNA cytosine methylase [Shigella sp. D9]
 gi|261227545|ref|ZP_05941826.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254631|ref|ZP_05947164.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293415271|ref|ZP_06657914.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300818618|ref|ZP_07098826.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300920181|ref|ZP_07136630.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|301327749|ref|ZP_07220953.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301644580|ref|ZP_07244570.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307312454|ref|ZP_07592088.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|312973821|ref|ZP_07787993.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|332278872|ref|ZP_08391285.1| DNA cytosine methylase [Shigella sp. D9]
 gi|83305674|sp|P0AEE0|DCM_ECO57 RecName: Full=DNA-cytosine methyltransferase
 gi|83305675|sp|P0AED9|DCM_ECOLI RecName: Full=DNA-cytosine methyltransferase; AltName:
           Full=M.EcoDcm
 gi|12516070|gb|AAG56975.1|AE005418_3 DNA cytosine methylase [Escherichia coli O157:H7 str. EDL933]
 gi|41239|emb|CAA31705.1| unnamed protein product [Escherichia coli K-12]
 gi|145719|gb|AAA03723.1| DNA cytosine methylase [Escherichia coli]
 gi|1736630|dbj|BAA15788.1| DNA cytosine methylase [Escherichia coli str. K12 substr. W3110]
 gi|1788271|gb|AAC75027.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362167|dbj|BAB36122.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|169889439|gb|ACB03146.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|187767102|gb|EDU30946.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013903|gb|EDU52025.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999305|gb|EDU68291.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354901|gb|EDU73320.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359668|gb|EDU78087.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371047|gb|EDU89463.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376137|gb|EDU94553.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|208724856|gb|EDZ74563.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730945|gb|EDZ79634.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741386|gb|EDZ89068.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161593|gb|ACI39026.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766668|gb|ACI81646.1| DNA cytosine methylase [Escherichia coli]
 gi|209766670|gb|ACI81647.1| DNA cytosine methylase [Escherichia coli]
 gi|209766672|gb|ACI81648.1| DNA cytosine methylase [Escherichia coli]
 gi|209766676|gb|ACI81650.1| DNA cytosine methylase [Escherichia coli]
 gi|209912641|dbj|BAG77715.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217317976|gb|EEC26403.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218427520|emb|CAR08415.2| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238860813|gb|ACR62811.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253324135|gb|ACT28737.1| DNA-cytosine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254593011|gb|ACT72372.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|260448927|gb|ACX39349.1| DNA-cytosine methyltransferase [Escherichia coli DH1]
 gi|291432919|gb|EFF05898.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300412803|gb|EFJ96113.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300528790|gb|EFK49852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300845711|gb|EFK73471.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301077088|gb|EFK91894.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|306907625|gb|EFN38128.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|310332416|gb|EFP99651.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|315061260|gb|ADT75587.1| DNA cytosine methylase [Escherichia coli W]
 gi|315136597|dbj|BAJ43756.1| DNA cytosine methylase [Escherichia coli DH1]
 gi|320191934|gb|EFW66581.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198651|gb|EFW73251.1| DNA-cytosine methyltransferase [Escherichia coli EC4100B]
 gi|320647167|gb|EFX16000.1| DNA cytosine methylase [Escherichia coli O157:H- str. 493-89]
 gi|320652452|gb|EFX20750.1| DNA cytosine methylase [Escherichia coli O157:H- str. H 2687]
 gi|320658054|gb|EFX25816.1| DNA cytosine methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658625|gb|EFX26319.1| DNA cytosine methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668523|gb|EFX35350.1| DNA cytosine methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323174657|gb|EFZ60277.1| DNA-cytosine methyltransferase [Escherichia coli LT-68]
 gi|323183944|gb|EFZ69331.1| DNA-cytosine methyltransferase [Escherichia coli 1357]
 gi|323378163|gb|ADX50431.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
 gi|323948336|gb|EGB44323.1| DNA-cytosine methyltransferase [Escherichia coli H120]
 gi|326342371|gb|EGD66152.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1044]
 gi|326344875|gb|EGD68622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|332101224|gb|EGJ04570.1| DNA cytosine methylase [Shigella sp. D9]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|110642066|ref|YP_669796.1| DNA cytosine methylase [Escherichia coli 536]
 gi|191173268|ref|ZP_03034798.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|110343658|gb|ABG69895.1| DNA-cytosine methyltransferase [Escherichia coli 536]
 gi|190906385|gb|EDV65994.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|222033699|emb|CAP76440.1| DNA-cytosine methyltransferase [Escherichia coli LF82]
 gi|312946553|gb|ADR27380.1| DNA cytosine methylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|324013473|gb|EGB82692.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300931174|ref|ZP_07146520.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300461007|gb|EFK24500.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|300975476|ref|ZP_07173024.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|300410366|gb|EFJ93904.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|74312499|ref|YP_310918.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|73855976|gb|AAZ88683.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|323168918|gb|EFZ54598.1| DNA-cytosine methyltransferase [Shigella sonnei 53G]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|295675907|ref|YP_003604431.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
 gi|295435750|gb|ADG14920.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
          Length = 430

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     + + P      PRLG IL                     
Sbjct: 236 PQHRERIIIVGFRGKTAFTWDDLRLPDE---GPRLGAILHRTDGTEPVLPWDHDRFFDHA 292

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++ KLW   Q     ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 293 TRRVQPKYTLTPKLWAYLQNYAAKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 349


>gi|284921868|emb|CBG34943.1| DNA-cytosine methyltransferase [Escherichia coli 042]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|259909642|ref|YP_002649998.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965264|emb|CAX56796.1| Cytosine-specific methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|261863687|gb|ACY01298.1| unknown [Erwinia pyrifoliae]
 gi|283479721|emb|CAY75637.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 473

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        FP     +P  G +LE+ +D K  ++ +L
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQNFTLSNISRYFPDK---RPEFGSLLEKTVDSKYILTPRL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL     + +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVDPTNSGSVARTLSARYHKDGSEI 383


>gi|218554541|ref|YP_002387454.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|260868553|ref|YP_003234955.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|218361309|emb|CAQ98893.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|257764909|dbj|BAI36404.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|323180787|gb|EFZ66327.1| DNA-cytosine methyltransferase [Escherichia coli 1180]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323968376|gb|EGB63783.1| DNA-cytosine methyltransferase [Escherichia coli M863]
 gi|327253092|gb|EGE64746.1| DNA-cytosine methyltransferase [Escherichia coli STEC_7v]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLREISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|218699478|ref|YP_002407107.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218369464|emb|CAR17229.1| DNA cytosine methylase [Escherichia coli IAI39]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|315290247|gb|EFU49625.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 478

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 278 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 334

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 335 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 380


>gi|300940416|ref|ZP_07155001.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300454810|gb|EFK18303.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|288934555|ref|YP_003438614.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
 gi|288889264|gb|ADC57582.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
          Length = 466

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF-----LNPSVEFKFPTPL--GIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F     L+     +    L   ++P  G++LE  +D K  ++  LW+ 
Sbjct: 266 LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTVDAKFILTPVLWKY 325

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +    ++  G GFGYGL    +  +   TLSARYYKDG+EI
Sbjct: 326 LYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 368


>gi|170681403|ref|YP_001743285.1| DNA cytosine methylase [Escherichia coli SMS-3-5]
 gi|170519121|gb|ACB17299.1| DNA-cytosine methyltransferase [Escherichia coli SMS-3-5]
 gi|324119009|gb|EGC12898.1| DNA-cytosine methyltransferase [Escherichia coli E1167]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|82543581|ref|YP_407528.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|81244992|gb|ABB65700.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|332096894|gb|EGJ01883.1| DNA-cytosine methyltransferase [Shigella boydii 3594-74]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|187732725|ref|YP_001879611.1| DNA cytosine methylase [Shigella boydii CDC 3083-94]
 gi|293446340|ref|ZP_06662762.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|187429717|gb|ACD08991.1| DNA-cytosine methyltransferase [Shigella boydii CDC 3083-94]
 gi|291323170|gb|EFE62598.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|320175451|gb|EFW50550.1| DNA-cytosine methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320184499|gb|EFW59303.1| DNA-cytosine methyltransferase [Shigella flexneri CDC 796-83]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|315286667|gb|EFU46100.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 475

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 275 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 331

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 377


>gi|331663456|ref|ZP_08364366.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|331059255|gb|EGI31232.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300923873|ref|ZP_07139889.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300419870|gb|EFK03181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|300956520|ref|ZP_07168803.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300316661|gb|EFJ66445.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|293410317|ref|ZP_06653893.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470785|gb|EFF13269.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|170019707|ref|YP_001724661.1| DNA cytosine methylase [Escherichia coli ATCC 8739]
 gi|169754635|gb|ACA77334.1| DNA-cytosine methyltransferase [Escherichia coli ATCC 8739]
 gi|323940380|gb|EGB36571.1| DNA-cytosine methyltransferase [Escherichia coli E482]
 gi|332093084|gb|EGI98148.1| DNA-cytosine methyltransferase [Shigella boydii 5216-82]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|191169235|ref|ZP_03030988.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
 gi|190900713|gb|EDV60509.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
          Length = 472

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|315296465|gb|EFU55762.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 476

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 333 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|300994233|ref|ZP_07180788.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300304943|gb|EFJ59463.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 477

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|324018843|gb|EGB88062.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 472

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300951590|ref|ZP_07165422.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300449174|gb|EFK12794.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 478

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 278 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 334

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 335 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 380


>gi|218705454|ref|YP_002412973.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|293405443|ref|ZP_06649435.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298381087|ref|ZP_06990686.1| DNA cytosine methylase [Escherichia coli FVEC1302]
 gi|218432551|emb|CAR13444.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|291427651|gb|EFF00678.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298278529|gb|EFI20043.1| DNA cytosine methylase [Escherichia coli FVEC1302]
          Length = 472

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238919389|ref|YP_002932904.1| DNA cytosine methylase [Edwardsiella ictaluri 93-146]
 gi|238868958|gb|ACR68669.1| modification methylase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F            KP  G++LE  +D K  +S KLWE 
Sbjct: 279 LPQHRERIVLVGFRRDLNIHHDFTLQKIQQFYPEKKPTFGELLEPAVDSKYILSPKLWEY 338

Query: 61  HQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
                + +   G GFG+GL       +   TLSARY+KDGSEI
Sbjct: 339 LYNYAKKHAEKGNGFGFGLVDPKNKESIARTLSARYHKDGSEI 381


>gi|206577074|ref|YP_002237693.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206566132|gb|ACI07908.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 477

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF-----LNPSVEFKFPTPL--GIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F     L+     +    L   ++P  G++LE  +D K  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTVDAKFILTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +    ++  G GFGYGL    +  +   TLSARYYKDG+EI
Sbjct: 337 LYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 379


>gi|193066646|ref|ZP_03047681.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|260844359|ref|YP_003222137.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
 gi|192925721|gb|EDV80380.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|257759506|dbj|BAI31003.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
          Length = 472

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|330911766|gb|EGH40276.1| DNA-cytosine methyltransferase [Escherichia coli AA86]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|301050676|ref|ZP_07197538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300297633|gb|EFJ54018.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 477

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|26248232|ref|NP_754272.1| DNA cytosine methylase [Escherichia coli CFT073]
 gi|227885611|ref|ZP_04003416.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|237705920|ref|ZP_04536401.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|331647554|ref|ZP_08348646.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|26108636|gb|AAN80839.1|AE016762_92 DNA-cytosine methyltransferase [Escherichia coli CFT073]
 gi|226900677|gb|EEH86936.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837184|gb|EEJ47650.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|281179022|dbj|BAI55352.1| DNA cytosine methylase [Escherichia coli SE15]
 gi|307553973|gb|ADN46748.1| DNA cytosine methylase [Escherichia coli ABU 83972]
 gi|320194327|gb|EFW68958.1| DNA-cytosine methyltransferase [Escherichia coli WV_060327]
 gi|323956356|gb|EGB52099.1| DNA-cytosine methyltransferase [Escherichia coli H263]
 gi|324005878|gb|EGB75097.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331043278|gb|EGI15416.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|295098276|emb|CBK87366.1| DNA-methyltransferase (dcm) [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 477

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F       +    +P + D+LE  +D K  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLNLKGDFTLRDLPSLYPARRPTVADLLEPAVDAKFILTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
             +  + ++  G GFG+G+       + T TLSARYYKDG+EI
Sbjct: 337 LYRYAKKHQAKGNGFGFGMVNPLNPDSVTRTLSARYYKDGAEI 379


>gi|320182772|gb|EFW57655.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|24113334|ref|NP_707844.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30063396|ref|NP_837567.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110805927|ref|YP_689447.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|24052347|gb|AAN43551.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30041648|gb|AAP17376.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110615475|gb|ABF04142.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|281601397|gb|ADA74381.1| Cytosine-specific methyltransferase [Shigella flexneri 2002017]
 gi|313650184|gb|EFS14597.1| DNA-cytosine methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|332756118|gb|EGJ86471.1| DNA-cytosine methyltransferase [Shigella flexneri 4343-70]
 gi|332757312|gb|EGJ87649.1| DNA-cytosine methyltransferase [Shigella flexneri 2747-71]
 gi|332757528|gb|EGJ87863.1| DNA-cytosine methyltransferase [Shigella flexneri K-671]
 gi|332766700|gb|EGJ96904.1| cytosine-specific methyltransferase [Shigella flexneri 2930-71]
 gi|333003060|gb|EGK22614.1| DNA-cytosine methyltransferase [Shigella flexneri VA-6]
 gi|333003307|gb|EGK22853.1| DNA-cytosine methyltransferase [Shigella flexneri K-218]
 gi|333004068|gb|EGK23602.1| DNA-cytosine methyltransferase [Shigella flexneri K-272]
 gi|333017687|gb|EGK36999.1| DNA-cytosine methyltransferase [Shigella flexneri K-304]
 gi|333017841|gb|EGK37148.1| DNA-cytosine methyltransferase [Shigella flexneri K-227]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238895488|ref|YP_002920223.1| DNA cytosine methylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330000908|ref|ZP_08303852.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238547805|dbj|BAH64156.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537840|gb|EGF64032.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 477

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDFLNP----------SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F              +  ++P    ++P  G++LE  +D K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYP---AVRPTFGELLEPTVDAKFILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           W+   +    ++  G GFGYGL       +   TLSARYYKDG+EI
Sbjct: 334 WKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|194430436|ref|ZP_03062919.1| DNA-cytosine methyltransferase [Escherichia coli B171]
 gi|194411515|gb|EDX27854.1| DNA-cytosine methyltransferase [Escherichia coli B171]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQCVTRTLSARYYKDGAEI 374


>gi|320331203|gb|EFW87160.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882725|gb|EGH16874.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 420

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEH------------------ 46
           PQ RER+ I+ F   +     + + PT     PRL  IL +                   
Sbjct: 228 PQHRERIIIVGFREKTGFSWDDLRLPTD---GPRLASILHKTDGTERVLPWDEDRFFDHK 284

Query: 47  ---IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++  LW   Q   E ++ AG GFG+G+ F +S  T TLSARY+KDGSEI
Sbjct: 285 KRVVQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGMAFPDS-VTRTLSARYHKDGSEI 341


>gi|306814216|ref|ZP_07448382.1| DNA cytosine methylase [Escherichia coli NC101]
 gi|305852375|gb|EFM52826.1| DNA cytosine methylase [Escherichia coli NC101]
          Length = 472

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F         P     L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISACFPAQRVTLAQLLDPIVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323222338|gb|EGA06720.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
          Length = 259

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 59  LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 118

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 119 LYRYAKKHQARGNGFGYGMVYPDNPGSVARTLSARYYKDGAEI 161


>gi|323191533|gb|EFZ76794.1| modification methylase EcoRII [Escherichia coli RN587/1]
          Length = 474

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 11/104 (10%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPT-----PLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +PQ RER+ ++ F   LN   +F         P   +P  G++L+ ++DDK  ++ +LWE
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQN-RPTFGELLDHNVDDKYILTPRLWE 339

Query: 60  GHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
                 + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 340 YLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|169786848|ref|YP_001700742.1| modification methylase (cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter baumannii
           SDF]
 gi|169150765|emb|CAP02959.1| modification methylase (Cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter
           baumannii]
          Length = 366

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +F++PTP G K    D+ EE+ +  K  +SN+ 
Sbjct: 186 INAKDFGVPQNRERIFIVGFHKDTGVHDFEYPTPTGKKVCFADVKEENVVPTKYYLSNQY 245

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS 84
            +  ++ K +++  G GFGY +  +NS
Sbjct: 246 LQTLERHKAHHESKGNGFGYAIIPDNS 272


>gi|161505003|ref|YP_001572115.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866350|gb|ABX22973.1| hypothetical protein SARI_03133 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN    F            +P  G +L+  +D K  +S KLWE 
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPKLWEY 340

Query: 61  HQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
                + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 341 LYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|331645413|ref|ZP_08346517.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
 gi|331045575|gb|EGI17701.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 11/104 (10%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPT-----PLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +PQ RER+ ++ F   LN   +F         P   +P  G++L+ ++DDK  ++ +LWE
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQN-RPTFGELLDHNVDDKYILTPRLWE 339

Query: 60  GHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
                 + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 340 YLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|213853126|ref|ZP_03382658.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 219

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 19  LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 78

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 79  LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 121


>gi|323158561|gb|EFZ44575.1| DNA-cytosine methyltransferase [Escherichia coli E128010]
          Length = 472

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVMLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQCVTRTLSARYYKDGAEI 374


>gi|300724477|ref|YP_003713798.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297631015|emb|CBJ91699.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        FP     +P L ++L+ ++D K  ++  L
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRNMNQLFPAQ---RPTLKELLDSNVDKKYILTPAL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           W+      + ++  G GFG+GL F +  ++   TLSARY+KDGSEI
Sbjct: 338 WKYLYNYAKKHQAKGNGFGFGLVFPDNPNSVARTLSARYHKDGSEI 383


>gi|213650730|ref|ZP_03380783.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 405

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 205 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 261

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 262 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 307


>gi|157147667|ref|YP_001454986.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157084872|gb|ABV14550.1| hypothetical protein CKO_03470 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN    F            +P  G +L+  +D K  +S KLWE 
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPKLWEY 340

Query: 61  HQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
                + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 341 LYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|149184876|ref|ZP_01863193.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
 gi|148830987|gb|EDL49421.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
          Length = 410

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 8   VPQRRERLYIIDFLNPS----VEFKFPTPLGIKPRL-------GDILEEH--------ID 48
           +PQ RER+ ++ F   S     + K P     + R         +I E H        + 
Sbjct: 222 LPQNRERIVLVGFREKSGFDWADLKLPVEGEARMRSVLHPENGSEIAESHYTEGELATVS 281

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            K T+SN LW+  +     ++ AG GFGYGL   +  T  TLSARYYKDGSEI
Sbjct: 282 AKYTLSNHLWKYLRDYSAKHRAAGNGFGYGLVGPDD-TCRTLSARYYKDGSEI 333


>gi|331658007|ref|ZP_08358969.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331056255|gb|EGI28264.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 472

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPIVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|327394286|dbj|BAK11708.1| modification methylase EcoRII [Pantoea ananatis AJ13355]
          Length = 459

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 15/108 (13%)

Query: 6   FGVPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISN 55
           F +PQ RER+ ++     +  S +F        FP  +   P L  +LE   DDK  +S 
Sbjct: 270 FFLPQHRERIVLVGIRRDIAGSAQFSLRDIRQFFPAQV---PSLQSLLEPQPDDKYILSP 326

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
            LW    +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 327 VLWRYLYQYAKKHKARGNGFGFGLNDPHNVHCCVRTLSARYYKDGSEI 374


>gi|213622824|ref|ZP_03375607.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 324

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        +P     +P L ++LE  ++ K  ++  L
Sbjct: 124 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 180

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 181 WKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 226


>gi|189423370|ref|YP_001950547.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419629|gb|ACD94027.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 415

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 21/113 (18%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIK--PRLGDIL-----------------EEHID 48
           VPQ RER+ I+ F      F F +    K  P+L  IL                 +  + 
Sbjct: 226 VPQHRERIIIVGF-REKTGFSFDSLQLPKEGPKLFSILHPEDGTEQEETPFTVGDKAKVH 284

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +K  ++N LW   Q     +K AG GFG+GL  +N  T  TLSARYYKDGSEI
Sbjct: 285 EKYILTNNLWSYLQAYAAKHKAAGNGFGFGLVGKND-TARTLSARYYKDGSEI 336


>gi|291617874|ref|YP_003520616.1| EcoRIIM [Pantoea ananatis LMG 20103]
 gi|291152904|gb|ADD77488.1| EcoRIIM [Pantoea ananatis LMG 20103]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 15/108 (13%)

Query: 6   FGVPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISN 55
           F +PQ RER+ ++     +  S +F        FP  +   P L  +LE   DDK  +S 
Sbjct: 270 FFLPQHRERIVLVGIRRDIAGSAQFSLRDIRQFFPAQV---PSLQSLLEPQPDDKYILSP 326

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
            LW    +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 327 VLWRYLYQYAKKHKARGNGFGFGLNDPHNVHCCVRTLSARYYKDGSEI 374


>gi|217980150|ref|YP_002364200.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
 gi|217508321|gb|ACK55106.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
          Length = 419

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 26/119 (21%)

Query: 8   VPQRRERLYIIDFLNPS-VEFKFPT-----------------PLGIKPRL---GDILEEH 46
           VPQ RER+ I+ F N   + F +                     G +P L   GD   +H
Sbjct: 223 VPQHRERILIVGFRNEDGIRFDWDAVGLPQKGVHVMRDILHRTDGTEPVLPWDGDRFFDH 282

Query: 47  ----IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
               + DK T++ KLW   Q   + ++  G GFG+GL    S    TLSARYYKDGSEI
Sbjct: 283 AGRRVQDKYTLTPKLWRYLQDYADKHRAKGNGFGFGLVHPGS-VARTLSARYYKDGSEI 340


>gi|331677842|ref|ZP_08378517.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331074302|gb|EGI45622.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 320

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 120 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 176

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 177 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 222


>gi|161617789|ref|YP_001591754.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161367153|gb|ABX70921.1| hypothetical protein SPAB_05653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 474

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G +L+  +D K  +S KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLKNIDKFYPEK---RPTFGQLLDSVVDSKYILSPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|331671799|ref|ZP_08372595.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
 gi|331070788|gb|EGI42147.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
          Length = 474

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPT-----PLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +PQ RER+ ++ F   LN   +F         P   +P  G++L+  +DDK  ++ +LWE
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQN-RPTFGELLDHDVDDKYILTPRLWE 339

Query: 60  GHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
                 + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 340 YLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|168234623|ref|ZP_02659681.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736513|ref|YP_002117411.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712015|gb|ACF91236.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291717|gb|EDY31067.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 474

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G +L+  +D K  +S KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLKNIDKFYPEK---RPTFGQLLDSVVDSKYILSPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|157145245|ref|YP_001452564.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157082450|gb|ABV12128.1| hypothetical protein CKO_00981 [Citrobacter koseri ATCC BAA-895]
          Length = 477

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F         P+    L ++LE  ++ +  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLNLKTDFTLRDIATRYPQQRITLAELLEPAVEARYVLTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ +  +  + T TLSARYYKDG+EI
Sbjct: 337 LYRYAKKHQARGNGFGYGMVYPANPGSVTRTLSARYYKDGAEI 379


>gi|327254549|gb|EGE66165.1| modification methylase EcoRII [Escherichia coli STEC_7v]
          Length = 474

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPT-----PLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +PQ RER+ ++ F   LN   +F         P   +P  G++L+  +DDK  ++ +LWE
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQN-RPTFGELLDHDVDDKYILTPRLWE 339

Query: 60  GHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
                 + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 340 YLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|310767946|gb|ADP12896.1| DNA cytosine methylase [Erwinia sp. Ejp617]
          Length = 467

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT----------PLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F     + K P           PL   P L  +L+ H++ K  ++  L
Sbjct: 278 LPQHRERIILVGFRR---DLKLPAFSLSALPALYPLQRTP-LKALLDSHVEAKYILTPTL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGL---FFENSATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYGL     EN     TLSARYYKDGSEI
Sbjct: 334 WKYLYQYAKKHQARGNGFGYGLVDPVLEN-GVVRTLSARYYKDGSEI 379


>gi|259908144|ref|YP_002648500.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224963766|emb|CAX55267.1| DNA-cytosine methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283478063|emb|CAY73979.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT----------PLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F     + K P           PL   P L  +L+ H++ K  ++  L
Sbjct: 278 LPQHRERIILVGFRR---DLKLPAFSLSALPALYPLQRTP-LKALLDSHVEAKYILTPTL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLF---FENSATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYGL     EN     TLSARYYKDGSEI
Sbjct: 334 WKYLYQYAKKHQARGNGFGYGLVDPALEN-GVVRTLSARYYKDGSEI 379


>gi|296159065|ref|ZP_06841892.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
 gi|295890626|gb|EFG70417.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
          Length = 426

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     +   P      PRLG IL                     
Sbjct: 232 PQHRERIIIVGFRGETSFSWDDLHLPEN---GPRLGSILHRTDGSEPVLPWDHDRFFDHT 288

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++  LW   Q   E ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 289 SRRVQPKYTLTPNLWTYLQNYAEKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 345


>gi|170691874|ref|ZP_02883038.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
 gi|170143158|gb|EDT11322.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
          Length = 438

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 54/117 (46%), Gaps = 27/117 (23%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDIL---------------------E 44
           PQ RER+ II F     EF F     P    PRL  IL                     +
Sbjct: 245 PQHRERIVIIGF-RSDTEFSFDDLRLP-ATGPRLASILHKTDGSEPLLPHDGERFFDHVQ 302

Query: 45  EHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             +  K T++  LW   Q   + ++ AG GFG+GL    ++ T TLSARY+KDGSEI
Sbjct: 303 RKVQPKYTLTPNLWAYLQAYADKHRAAGNGFGFGL-VTPASVTRTLSARYHKDGSEI 358


>gi|294979850|pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
           Shigella Flexneri 2a Str. 301
          Length = 482

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 274 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPXVEAKYILTPVL 330

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG  + N+  + T TLSARYYKDG+EI
Sbjct: 331 WKYLYRYAKKHQARGNGFGYGXVYPNNPQSVTRTLSARYYKDGAEI 376


>gi|290508755|ref|ZP_06548126.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289778149|gb|EFD86146.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 477

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF-----LNPSVEFKFPTPL--GIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F     L+     +    L   ++P  G++LE   D K  ++  LW+ 
Sbjct: 277 LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTADAKFILTPVLWKY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +    ++  G GFGYGL    +  +   TLSARYYKDG+EI
Sbjct: 337 LYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 379


>gi|194433657|ref|ZP_03065933.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|194418086|gb|EDX34179.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|332095525|gb|EGJ00541.1| DNA-cytosine methyltransferase [Shigella dysenteriae 155-74]
          Length = 472

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F    N   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 272 LPQHRERIVLVGFRRDFNLKADFTLRDISECFPAQ---RVTLAQLLDPMVEAKYILTPVL 328

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 329 WKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|331673470|ref|ZP_08374238.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331069668|gb|EGI41055.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 472

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKF----PTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F            +  L  +L+  ++ K  ++  LW+ 
Sbjct: 272 LPQHRERIVLVGFRRDLNLKADFTLRDISECFSAQRVTLAQLLDPMVEAKYILTPVLWKY 331

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + N+  + T TLSARYYKDG+EI
Sbjct: 332 LYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238787820|ref|ZP_04631617.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
 gi|238724163|gb|EEQ15806.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
          Length = 475

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +P  G++LE  + DK  ++  L
Sbjct: 281 LPQHRERIVLVGFRKDLNIDKDFTLKDINKFFPEK---RPEFGELLESVVADKYILTPHL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFG+GL     + +   TLSARY+KDGSEI
Sbjct: 338 WKYLYNYAKKHQAKGNGFGFGLVDPTNSESVARTLSARYHKDGSEI 383


>gi|315498495|ref|YP_004087299.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB
           48]
 gi|315416507|gb|ADU13148.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB
           48]
          Length = 410

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 20/113 (17%)

Query: 8   VPQRRERLYIIDF------------LNPSVEFKFPTPLG-------IKPRLGDILEEHID 48
           VPQ RER+ I+ F            L P    K  + L         +P     +   + 
Sbjct: 224 VPQHRERIVIVGFREDVPFSWDDLNLPPKGSVKLSSILHPENAIEEAEPPYTTGIRAEVA 283

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            K T+++KLW   Q   + +K AG GFG+GL       + TLSARYYKDGSEI
Sbjct: 284 SKYTLTDKLWAYLQNYADKHKAAGNGFGFGLVGPGD-VSRTLSARYYKDGSEI 335


>gi|156933419|ref|YP_001437335.1| DNA cytosine methylase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531673|gb|ABU76499.1| hypothetical protein ESA_01237 [Cronobacter sakazakii ATCC BAA-894]
          Length = 481

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 17/107 (15%)

Query: 8   VPQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +PQ RER+ ++ F           L    EF +P     +P  G++L+  +D +  ++  
Sbjct: 283 LPQHRERIVLVGFRRSLNLHDGFTLRALPEF-YPAR---RPAFGELLDPTVDARYVLTPT 338

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFF-ENSAT-TNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYGL   +N A+   TLSARYYKDG+EI
Sbjct: 339 LWKYLYRYAQKHQAKGNGFGYGLVDPQNPASVARTLSARYYKDGAEI 385


>gi|291463698|pdb|3LX6|A Chain A, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
 gi|291463699|pdb|3LX6|B Chain B, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
          Length = 410

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +  L  +L+  ++ K  ++  L
Sbjct: 212 LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQ---RVTLAQLLDPXVEAKYILTPVL 268

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG  + N+  + T TLSARYYKDG+EI
Sbjct: 269 WKYLYRYAKKHQARGNGFGYGXVYPNNPQSVTRTLSARYYKDGAEI 314


>gi|300717257|ref|YP_003742060.1| cytosine-specific methyltransferase [Erwinia billingiae Eb661]
 gi|299063093|emb|CAX60213.1| Cytosine-specific methyltransferase [Erwinia billingiae Eb661]
          Length = 466

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 8   VPQRRERLYII----DFLNPSVEFKFPTPLGIKPR--LGDILEEHIDDKSTISNKLWEGH 61
           +PQ RER+ ++    D   P    K  + L  K R  L  ++E  +D K  ++  LW+  
Sbjct: 278 LPQHRERIVLVGMRRDLKLPEFTLKALSTLYPKQRIPLRALMEPEVDSKYILTPTLWKYL 337

Query: 62  QKRKENNKIAGKGFGYGLFFENSAT--TNTLSARYYKDGSEI 101
               + ++  G GFGYGL      T    TLSARYYKDGSEI
Sbjct: 338 YNYAKKHQAKGNGFGYGLVDPQVETGVVRTLSARYYKDGSEI 379


>gi|304398880|ref|ZP_07380750.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
 gi|304353584|gb|EFM17961.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
          Length = 458

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 8   VPQRRERLYII---------DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           +PQ RER+ ++         DF    +   +P  +   P L  +LE   DDK  +S  LW
Sbjct: 272 LPQHRERIVLVGIRRDLKKQDFTLRDIRRFYPAQV---PSLQSLLERAPDDKYILSPVLW 328

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
               +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 329 RYLYQYAKKHKAKGNGFGFGLNDPHNPDCCVRTLSARYYKDGSEI 373


>gi|262043463|ref|ZP_06016586.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039205|gb|EEW40353.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 477

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDFLNP----------SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F              +  ++P    + P  G++LE  +D K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYP---AVWPTFGELLEPTVDAKFILTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLF--FENSATTNTLSARYYKDGSEI 101
           W+   +    ++  G GFGYGL       +   TLSARYYKDG+EI
Sbjct: 334 WKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|260598469|ref|YP_003211040.1| DNA cytosine methylase [Cronobacter turicensis z3032]
 gi|260217646|emb|CBA31957.1| DNA-cytosine methyltransferase [Cronobacter turicensis z3032]
          Length = 450

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++L+  +D +  ++  L
Sbjct: 252 LPQHRERIVLVGFRRDLNLHDGFTLRALPELYPAR---RPAFGELLDPTVDARYVLTPTL 308

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-ENSAT-TNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYGL   +N A+   TLSARYYKDG+EI
Sbjct: 309 WKYLYRYAQKHQAKGNGFGYGLVDPQNPASVARTLSARYYKDGAEI 354


>gi|133756232|ref|YP_001096382.1| DNA cytosine methylase [Escherichia coli]
 gi|110084067|gb|ABG49221.1| hypothetical protein [Escherichia coli]
          Length = 566

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 370 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 426

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 427 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 472


>gi|330960632|gb|EGH60892.1| DNA cytosine methylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 178

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 36  KPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYY 95
           +P  GD+L++ +D K  ++  LW+   +  E ++  G GFG+GL   N     TLSARY+
Sbjct: 18  RPSFGDLLDKEVDSKYILTPNLWDYLYRYAEKHRQKGNGFGFGLTRPND-IARTLSARYH 76

Query: 96  KDGSEI 101
           KDGSEI
Sbjct: 77  KDGSEI 82


>gi|165938005|ref|ZP_02226565.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165914028|gb|EDR32645.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Yersinia pestis biovar Orientalis
           str. IP275]
          Length = 282

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 86  LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 142

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 143 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 188


>gi|160431610|ref|YP_001551777.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin]
 gi|298206539|ref|YP_003717476.1| EcoRII modification enzyme [Escherichia coli]
 gi|159885479|dbj|BAF93082.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|296537944|gb|ADH29964.1| EcoRII modification enzyme [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|134044844|ref|YP_001102126.1| cytosine-specific methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|133905378|gb|ABO42140.1| cytosine-specific methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
          Length = 274

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 78  LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 134

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 135 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 180


>gi|296538000|gb|ADH30019.1| EcoRII cytosine methylase [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|118614638|ref|YP_908421.1| DNA methyltrasferase [Photobacterium damselae subsp. piscicida]
 gi|118596729|dbj|BAF38033.1| DNA methyltrasferase [Photobacterium damselae subsp. piscicida]
          Length = 266

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 70  LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 126

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 127 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 172


>gi|327198092|ref|YP_004306459.1| gp47 [Burkholderia phage KL3]
 gi|310657226|gb|ADP02340.1| gp47 [Burkholderia phage KL3]
          Length = 422

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 29/119 (24%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------ 45
            PQ RER+ I+ F   +     + + P      PRL  IL +                  
Sbjct: 228 TPQHRERIVIVGFRKKTGFSWDDLRLPAD---GPRLASILHKTDGSEPVLPWDGERFFDH 284

Query: 46  ---HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
               +  K T++  LW   Q   E ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 285 EKRKVQSKYTLTPNLWTYLQAYAEKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 342


>gi|308187315|ref|YP_003931446.1| DNA cytosine methylase [Pantoea vagans C9-1]
 gi|308057825|gb|ADO09997.1| DNA cytosine methylase [Pantoea vagans C9-1]
          Length = 458

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 8   VPQRRERLYII---------DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           +PQ RER+ ++         DF    +   +P  +   P L  +LE+  DDK  +S  LW
Sbjct: 272 LPQHRERIVLVGIRRDLKKQDFTLRDIRRFYPAQV---PSLQSLLEKAPDDKYILSPVLW 328

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
               +  + +K  G GFG+GL    +      TLSARYYKDGSEI
Sbjct: 329 RYLYQYAKKHKAKGNGFGFGLNDPRNPDCCVRTLSARYYKDGSEI 373


>gi|113706802|ref|YP_724464.1| DNA cytosine methylase [Escherichia coli]
 gi|190576899|ref|YP_001966231.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|194433606|ref|ZP_03065883.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|209901141|ref|YP_002286923.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|209901236|ref|YP_002287017.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|215528089|ref|YP_002332862.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|302141639|ref|YP_003813098.1| EcoRII methylase [Klebsiella pneumoniae]
 gi|127448|sp|P05101|MTE2_ECOLX RecName: Full=Modification methylase EcoRII; Short=M.EcoRII;
           AltName: Full=Cytosine-specific methyltransferase EcoRII
 gi|41317|emb|CAA28725.1| unnamed protein product [Escherichia coli HB101]
 gi|109390538|gb|ABG33840.1| EcoRII modification enzyme [Escherichia coli]
 gi|110264483|gb|ABG56846.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|165928612|gb|ABY74380.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|194418198|gb|EDX34290.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|197092209|gb|ACH42172.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|209574187|gb|ACI63075.1| modification methylase [Klebsiella pneumoniae]
 gi|209574298|gb|ACI63184.1| modification methylase [Klebsiella pneumoniae]
 gi|296033904|gb|ADG84867.1| EcoRII methylase [Klebsiella pneumoniae]
          Length = 477

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|48093754|gb|AAT40239.1| Eco128I DNA methylase [Escherichia coli]
          Length = 332

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 200 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 256

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 257 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 302


>gi|297622183|ref|YP_003675732.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
 gi|296492002|gb|ADH29504.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
          Length = 491

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 295 LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQ---RPSFGELLEPVVDSKYILTPKL 351

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 352 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|307729019|ref|YP_003906243.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
 gi|307583554|gb|ADN56952.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
          Length = 428

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     + K P      PRL  IL +                   
Sbjct: 235 PQHRERIVIVGFRQETGFSFDDLKLPAS---GPRLASILHKTDGSEPLLPHDGERFFDPV 291

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++  LW   Q   E ++ AG GFG+GL    ++ T TLSARY+KDGSEI
Sbjct: 292 RRSVQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGL-VTPASVTRTLSARYHKDGSEI 348


>gi|91782477|ref|YP_557683.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
 gi|91686431|gb|ABE29631.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
          Length = 418

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 27/117 (23%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTPLGIK---PRLGDILEE-------------------- 45
           PQ RER+ I+ F     EF F   L +    PRL  IL +                    
Sbjct: 231 PQHRERIVIVGF-REETEFTFDD-LNVPAEGPRLASILHKTDGSEPVLAHDGDRFFDHAS 288

Query: 46  -HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             +  + T++  LW   Q     ++ AG GFG+GL   +S  T TLSARY+KDGSEI
Sbjct: 289 REVQPRYTLTANLWAYLQAYAAKHRAAGNGFGFGLVTPDS-VTRTLSARYFKDGSEI 344


>gi|226807724|ref|YP_002791420.1| Dcm [Enterobacter cloacae]
 gi|226810038|ref|YP_002791733.1| Dcm [Enterobacter cloacae]
 gi|226425951|gb|ACO54044.1| Dcm [Enterobacter cloacae]
 gi|226426265|gb|ACO54357.1| Dcm [Enterobacter cloacae]
          Length = 489

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 9   PQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           PQ RER+ +I F           L    +F +P     +P L D+L+  +D K  +S KL
Sbjct: 292 PQHRERIVLIGFRRDLRLKDGFTLRDIKDF-YPDK---RPSLSDLLDPSVDSKYILSPKL 347

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 348 WEYLYNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 393


>gi|323960520|gb|EGB56149.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 477

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEH---RPSFGELLEPVVDSKYILTPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|157412142|ref|YP_001481483.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|99867167|gb|ABF67812.1| cytosine methylase [Escherichia coli APEC O1]
          Length = 489

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 9   PQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           PQ RER+ +I F           L    +F +P     +P L D+L+  +D K  +S KL
Sbjct: 292 PQHRERIVLIGFRRDLRLKDGFTLRDIKDF-YPDK---RPSLSDLLDPSVDSKYILSPKL 347

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 348 WEYLYNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 393


>gi|331643338|ref|ZP_08344469.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
 gi|331036809|gb|EGI09033.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
          Length = 491

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 295 LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEH---RPSFGELLEPVVDSKYILTPKL 351

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 352 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|218701133|ref|YP_002408762.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218371119|emb|CAR18947.1| Modification methylase EcoRII (M.EcoRII) (Cytosine-specific
           methyltransferase EcoRII) [Escherichia coli IAI39]
          Length = 491

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 295 LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEH---RPSFGELLEPVVDSKYILTPKL 351

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 352 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|307139342|ref|ZP_07498698.1| DNA cytosine methylase [Escherichia coli H736]
          Length = 477

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN    F        +P     +P  G++LE  +D K  ++ KL
Sbjct: 281 LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEH---RPSFGELLEPVVDSKYILTPKL 337

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF-EN-SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   EN  +   TLSARY+KDGSEI
Sbjct: 338 WEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|121997219|ref|YP_001002006.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
 gi|121588624|gb|ABM61204.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
          Length = 436

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 20/113 (17%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLG------IKPRLGDILEE---------HID 48
           VPQ RER+Y++ F   +     +  FP P        + P  G    E          + 
Sbjct: 241 VPQHRERIYMVGFRKDTPFTWNQLDFPAPDARTLREVLHPEDGSEAAEPPYTEGDLATVG 300

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           DK  +S KLW+  Q  +  ++ AG GFGY        T  TLSARY+KDGSEI
Sbjct: 301 DKYVLSEKLWKYLQDYRAKHEHAGNGFGYSKVGPED-TARTLSARYHKDGSEI 352


>gi|38347986|ref|NP_941235.1| DNA cytosine methylase [Serratia marcescens]
 gi|190410308|ref|YP_001965811.1| dcm [Klebsiella pneumoniae]
 gi|38259463|emb|CAE51691.1| DNA-cytosine methyltransferase [Serratia marcescens]
 gi|146151102|gb|ABQ02868.1| dcm [Klebsiella pneumoniae]
          Length = 475

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 9   PQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           PQ RER+ +I F           L    +F +P     +P L D+L+  +D K  +S KL
Sbjct: 278 PQHRERIVLIGFRRDLRLKDGFTLRDIKDF-YPDK---RPSLSDLLDPSVDSKYILSPKL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 334 WEYLYNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 379


>gi|283785730|ref|YP_003365595.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
 gi|282949184|emb|CBG88792.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
          Length = 477

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEF-------KFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F       ++P     +  L ++LE  ++ K  ++  L
Sbjct: 277 LPQHRERIVLVGFRRDLNLKGDFTLRDISTRYPQR---RTTLAELLEPVVEAKYVLTPVL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF--ENSATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYG+    + ++ T TLSARYYKDG+EI
Sbjct: 334 WKYLYRYAKKHQAKGNGFGYGMVSPSDPNSVTRTLSARYYKDGAEI 379


>gi|188533556|ref|YP_001907353.1| DNA cytosine methylase [Erwinia tasmaniensis Et1/99]
 gi|188028598|emb|CAO96460.1| DNA-cytosine methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 469

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 8   VPQRRERLYIIDFLN----PSVEFKFPTPLGIKPR--LGDILEEHIDDKSTISNKLWEGH 61
           +PQ RER+ ++ F      P+        L  + R  L  +L+  +++K  ++  LW+  
Sbjct: 280 LPQHRERIVLVGFRRDLQLPAFSLSLLPALYPRQRTPLNALLDSQVEEKYILTPTLWKYL 339

Query: 62  QKRKENNKIAGKGFGYGLF---FENSATTNTLSARYYKDGSEI 101
               + ++  G GFGYGL     EN     TLSARYYKDGSEI
Sbjct: 340 YHYAKKHQARGNGFGYGLVDPALEN-GVVRTLSARYYKDGSEI 381


>gi|225076313|ref|ZP_03719512.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
 gi|224952437|gb|EEG33646.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
          Length = 359

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILE-EHIDDKSTISNK 56
           + A DFGVPQ RER++I+ F +P     +F++P P+G+K    DI E E +  K  +S  
Sbjct: 181 INAKDFGVPQNRERIFIVGF-HPDTKVNDFEYPKPIGLKTSFSDIREKETVPTKYYLSTV 239

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
             +  +K KE ++  G GFGY
Sbjct: 240 YIDTLRKHKERHEAKGNGFGY 260


>gi|146312197|ref|YP_001177271.1| DNA cytosine methylase [Enterobacter sp. 638]
 gi|145319073|gb|ABP61220.1| DNA-cytosine methyltransferase [Enterobacter sp. 638]
          Length = 471

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F   LN   +F       +    +P + ++LE   D K  ++  LW+ 
Sbjct: 271 LPQHRERIVLVGFRRDLNLKGDFTLRDIPSLYPAHRPSVAELLEPAFDAKFILTPVLWKY 330

Query: 61  HQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
             +  + ++  G GFG+G+    +  + T TLSARYYKDG+EI
Sbjct: 331 LYRYAKKHQAKGNGFGFGMVDPRNPHSVTRTLSARYYKDGAEI 373


>gi|157368818|ref|YP_001476807.1| DNA cytosine methylase [Serratia proteamaculans 568]
 gi|157320582|gb|ABV39679.1| DNA-cytosine methyltransferase [Serratia proteamaculans 568]
          Length = 491

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIIDF---LNPSVEFK-------FPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F   LN   +F        FP     +P  G++L E +  K  ++  L
Sbjct: 297 LPQHRERIVLVGFRRDLNIHGDFSLKNLSQFFPKK---RPSFGELLLEDVAPKYILTEHL 353

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF--ENSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFG+GL      S+   TLSARY+KDGSEI
Sbjct: 354 WKYLYNYAKKHQAKGNGFGFGLVNPKNESSVARTLSARYHKDGSEI 399


>gi|149926993|ref|ZP_01915251.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
 gi|149824214|gb|EDM83434.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
          Length = 435

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 54/118 (45%), Gaps = 26/118 (22%)

Query: 8   VPQRRERLYIIDFLNPSVEFKF---PTPLGIKPRLGDILEE------------------- 45
            PQ RER+ I  F +  V F +   P P     +L +IL +                   
Sbjct: 244 TPQHRERILIAGFAD-QVAFDWDAIPLPPKGSRKLKEILHKTDGSEPYLPWDENRFFDHD 302

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              + DK T++  LW   Q     +K  G GFG+GL    S TT TLSARYYKDGSEI
Sbjct: 303 SKKVQDKYTLTPGLWTYLQNYAAKHKAKGNGFGFGLVGPES-TTRTLSARYYKDGSEI 359


>gi|323525262|ref|YP_004227415.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
 gi|323382264|gb|ADX54355.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
          Length = 428

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F   +     + + P      PRL  IL +                   
Sbjct: 235 PQHRERIVIVGFREETGFSFDDLRLPAN---GPRLASILHKTDGSEPLLPHDGERFFDHV 291

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +  K T++  LW   Q   E ++ AG GFG+GL    ++ T TLSARY+KDGSEI
Sbjct: 292 RRKVQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGL-VTPASVTRTLSARYHKDGSEI 348


>gi|169334482|ref|ZP_02861675.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259199|gb|EDS73165.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis DSM
           17244]
          Length = 337

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 5   DFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKLWEGH 61
           +FGVPQ RER+YI+ F N     +F FPTP+    ++ DI+EE  +  K  +S+   E  
Sbjct: 160 NFGVPQNRERIYIVAFRNDIAPKDFIFPTPIDENKKIKDIMEEKPVSPKYYLSDVYLETL 219

Query: 62  QKRKENNKIAGKGFGY 77
           +K K  ++  G GFGY
Sbjct: 220 RKHKARHEAKGNGFGY 235


>gi|161502886|ref|YP_001569998.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864233|gb|ABX20856.1| hypothetical protein SARI_00944 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYII----------DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++          DF   ++   +P     +P L ++LE  ++ K  ++  L
Sbjct: 276 LPQHRERIVLVGVRRDLNLKTDFTLRNIARCYPPR---RPTLAELLEPVVEAKYILTPVL 332

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W+      + ++  G GFGYG+ + ++  +   TLSARYYKDG+EI
Sbjct: 333 WKYLYCYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|317048624|ref|YP_004116272.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
 gi|316950241|gb|ADU69716.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
          Length = 467

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDF-----LNPSVEFKFPTPLGIK--PRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++       L+     +    L  K  P L  +LE   D K T+S  LW  
Sbjct: 277 LPQHRERIVLVGIRRDTRLSEGFTLRALAQLYPKKVPTLKSLLEPQPDAKYTLSPVLWNY 336

Query: 61  HQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
             +  + +K  G GFG+GL      S    TLSARYYKDGSEI
Sbjct: 337 LYQYAKKHKAKGNGFGFGLNDPRNPSVCVRTLSARYYKDGSEI 379


>gi|238898088|ref|YP_002923769.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465848|gb|ACQ67622.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 401

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 29/118 (24%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDIL--------------EEHIDD- 49
           PQ RER+ I+ F   +     + K P      PRL  IL              E   D  
Sbjct: 208 PQHRERIIIVGFREKTGFSWDDLKLPEE---GPRLASILHRTDGTEPVLPWDGERFFDHD 264

Query: 50  ------KSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                 + T++  LW   Q   + ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 265 RRAVPLRYTLTPNLWAYLQAYADKHRAAGNGFGFGIVYPDS-VTRTLSARYHKDGSEI 321


>gi|7636053|emb|CAB88410.1| putative methyltransferase [Serratia marcescens]
          Length = 290

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 17/106 (16%)

Query: 9   PQRRERLYIIDF-----------LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           PQ RER+ +I F           L    +F +P     +P L D+L+  +D K  +S  L
Sbjct: 93  PQHRERIVLIGFRRDLRLKDGFTLRDIKDF-YPDK---RPSLSDLLDPSVDSKYILSPXL 148

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE      + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 149 WEYLYNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 194


>gi|254526757|ref|ZP_05138809.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
           9202]
 gi|221538181|gb|EEE40634.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
           9202]
          Length = 298

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 23/115 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT----PLGIKPRLGDILE-----------------EH 46
           VPQ R+R+YI+ F   +  F F       +   P L  +L                    
Sbjct: 105 VPQNRQRIYIVGFREEN-NFNFDDLIIPDISKGPTLSSVLHPEDGSENFEDPYTIPHLSK 163

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +++K TI+NKLW+  +  ++ ++  G GFG+GL  +      TLSARY+KDG+EI
Sbjct: 164 VNEKYTITNKLWDYLKMYEKKHRAKGNGFGFGL-CKREDVARTLSARYHKDGAEI 217


>gi|213027601|ref|ZP_03342048.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 176

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 36  KPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSAR 93
           +P L ++LE  ++ K  ++  LW+   +  + ++  G GFGYG+ + ++  +   TLSAR
Sbjct: 11  RPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSAR 70

Query: 94  YYKDGSEI 101
           YYKDG+EI
Sbjct: 71  YYKDGAEI 78


>gi|213053049|ref|ZP_03345927.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 169

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 36  KPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSAR 93
           +P L ++LE  ++ K  ++  LW+   +  + ++  G GFGYG+ + ++  +   TLSAR
Sbjct: 4   RPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSAR 63

Query: 94  YYKDGSEI 101
           YYKDG+EI
Sbjct: 64  YYKDGAEI 71


>gi|281420730|ref|ZP_06251729.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
 gi|281405022|gb|EFB35702.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
          Length = 432

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + +CD+G+PQ RER++ + F  P+ +FK+P P+ ++ ++ D LE++ID K  +  K
Sbjct: 203 LNSCDYGIPQHRERVFCLGFKKPT-DFKYPAPIKLEYKMYDFLEDYIDTKYFLKEK 257


>gi|113971536|ref|YP_735329.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
 gi|113886220|gb|ABI40272.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
          Length = 417

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDILEE---HIDDKSTISNKLWEG 60
           V QRR R +++    D       FKFP   G    L D LEE    + ++ TIS++LWEG
Sbjct: 254 VAQRRVRCFMVCVREDVFQEFGAFKFPEFEGEPIPLRDALEELTAELMEEYTISDRLWEG 313

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           H  R + N   G GF   +   N   +NT+ ARY KDG E
Sbjct: 314 HINRTQRNLDRGTGFTAHVADLNRP-SNTIVARYGKDGKE 352


>gi|54293106|ref|YP_125521.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
 gi|53752938|emb|CAH14374.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
          Length = 417

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 24/115 (20%)

Query: 8   VPQRRERLYIIDF------------LNPSVEFKFPTPLGIKPRLGDILEE---------H 46
           VPQ RER++I+ F            L P       + L   P  G  +EE          
Sbjct: 226 VPQHRERIFIVGFREDLPFSWNDLRLPPKNSVLLESIL--HPENGTEIEEKPYTFGEKAE 283

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +    T+S+KLW   Q  K+ +   G GFG+GL  E +    TLSARY+KDGSEI
Sbjct: 284 VSSCFTLSDKLWNYLQDYKKKHSEKGNGFGFGLVSEKN-IARTLSARYHKDGSEI 337


>gi|16923911|gb|AAL31632.1|AF438204_2 C5 DNA methyltransferase [Positive selection vector pMTet1]
          Length = 418

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  FG+PQ+R+R Y++ FLN ++ F+FP P  I   +G++LE  +   S IS  L + 
Sbjct: 246 LDASHFGIPQKRKRFYLVAFLNQNIHFEFPKPPMISKDIGEVLESDVTGYS-ISEHLQKS 304

Query: 61  HQKRKENNK 69
           +  +K++ K
Sbjct: 305 YLFKKDDGK 313


>gi|127464|sp|P11408|MTM1_MORSP RecName: Full=Modification methylase MspI; Short=M.MspI; AltName:
           Full=Cytosine-specific methyltransferase MspI
 gi|44539|emb|CAA32393.1| unnamed protein product [Moraxella sp.]
          Length = 418

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  FG+PQ+R+R Y++ FLN ++ F+FP P  I   +G++LE  +   S IS  L + 
Sbjct: 246 LDASHFGIPQKRKRFYLVAFLNQNIHFEFPKPPMISKDIGEVLESDVTGYS-ISEHLQKS 304

Query: 61  HQKRKENNK 69
           +  +K++ K
Sbjct: 305 YLFKKDDGK 313


>gi|313668796|ref|YP_004049080.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica ST-640]
 gi|313006258|emb|CBN87720.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica 020-06]
          Length = 362

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +FK+P P GI+    DI E + +  K  +S + 
Sbjct: 180 VNAKDFGVPQNRERIFIVGFRGDTDIKDFKYPEPTGIQTAFQDIREKDTVPTKYYLSTQY 239

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  +K K+ ++  G GFGY
Sbjct: 240 IDTLRKHKQRHEEKGNGFGY 259


>gi|254429380|ref|ZP_05043087.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
 gi|196195549|gb|EDX90508.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
          Length = 435

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 24/117 (20%)

Query: 8   VPQRRERLYIIDFLNPSV------------EFKFPTPL----GIKPRL---GDILEEH-- 46
           VPQ RER+ I+ F  P              E +    L    G +P L   GD   +H  
Sbjct: 244 VPQHRERIAIVGFREPMPFSWDAMKMAGKGEKRMREVLHREDGSEPYLEWDGDRFFDHGK 303

Query: 47  --IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             +++K  ++ KLW+  +  K  ++  G GFG+GL   +S    TLSARYYKDGSEI
Sbjct: 304 GEVNEKYILTPKLWKYLKDYKAKHQAKGNGFGFGLVGPDS-VARTLSARYYKDGSEI 359


>gi|462658|sp|P34878|MTSB_LACLC RecName: Full=Modification methylase ScrFIB; Short=M.ScrFI-B;
           Short=M.ScrFIB; AltName: Full=Cytosine-specific
           methyltransferase ScrFIB
 gi|149495|gb|AAA16838.1| methyl-5-cytosine methylase [Lactococcus lactis]
 gi|2327032|gb|AAB66694.1| 5-methyl-cytosine-methyltransferase [Lactococcus lactis subsp.
           cremoris]
 gi|739995|prf||2004282A methyl-5-cytosine methyltransferase
          Length = 360

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A DFG+PQ RER++ I  LNP+ +F FP    +   + D+LEE++ +K  + N
Sbjct: 201 LNARDFGIPQNRERVFCISILNPNEDFTFPQKQNLTLSMNDLLEENVSEKFYLKN 255


>gi|261400408|ref|ZP_05986533.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209852|gb|EEZ76307.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 362

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +FK+P P GI+    DI E + +  K  +S + 
Sbjct: 180 VNAKDFGVPQNRERIFIVGFRGDTDIKDFKYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 239

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  +K K+ ++  G GFGY
Sbjct: 240 IDTLRKHKQRHEEKGNGFGY 259


>gi|315608882|ref|ZP_07883855.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
 gi|315249409|gb|EFU29425.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
          Length = 312

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILEEHIDDKSTISNKLW 58
           + A DFG+PQ+RER+ I+ F + ++ F FPTP+ I  R  L DILE  +D K  + +K+ 
Sbjct: 147 LNALDFGIPQKRERIIIVGFKD-NILFSFPTPVPISQRKTLKDILEIDVDKKYYVKDKIR 205

Query: 59  EGHQKR 64
           E    R
Sbjct: 206 ESRLMR 211


>gi|153870185|ref|ZP_01999636.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152073352|gb|EDN70367.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 235

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + + DFG+PQ+RER  I+ F   ++ F FP PLGIKP L  ILE+   D     N L   
Sbjct: 144 LNSLDFGIPQKRERTIIVGF-QENIAFSFPKPLGIKPDLTKILEK---DSEVEKNILLLM 199

Query: 61  HQKRKENNKI 70
             K++E  K+
Sbjct: 200 SLKKRECKKL 209


>gi|255514225|gb|EET90487.1| DNA-cytosine methyltransferase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 328

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL---------GIKPRLGD----ILEEHI 47
           + A ++GVPQ+R+R++ I       E     P+         G+KP +      +  + +
Sbjct: 156 LNAANYGVPQKRQRIFFIGVNRRQAEKAILPPVPTHSEHPTNGLKPWVPSKQFLLPPQKV 215

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
             +   S ++  G  +RK+ N     GFG+  F + S  +NT+SARY+KDG+E
Sbjct: 216 SKRFYYSERMINGFIRRKKKNAERNIGFGWQ-FLDFSKPSNTISARYWKDGAE 267


>gi|167746073|ref|ZP_02418200.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
 gi|167654588|gb|EDR98717.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
          Length = 312

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +   D+G+PQ R R YI+ F N + EF+FP    +   L D+LE  +DDK  +S ++
Sbjct: 148 LNTADYGIPQTRNRTYIVCFANDNAEFEFPDKQELNLTLQDLLETEVDDKYFLSERI 204


>gi|292488627|ref|YP_003531511.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|292899788|ref|YP_003539157.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291199636|emb|CBJ46755.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291554058|emb|CBA21160.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|312172770|emb|CBX81026.1| DNA cytosine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 469

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT----------PLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++ F     + K P           P    P L  +L+  ++ K  ++  L
Sbjct: 280 LPQHRERIILVGFRR---DLKLPAFSLSALPAWYPQQRTP-LHALLDTDVEAKYILTPTL 335

Query: 58  WEGHQKRKENNKIAGKGFGYGLF---FENSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFGYGL     EN     TLSARYYKDGSEI
Sbjct: 336 WKYLYHYAKKHQARGNGFGYGLVDPALEN-GVVRTLSARYYKDGSEI 381


>gi|320156908|ref|YP_004189287.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319932220|gb|ADV87084.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 14/108 (12%)

Query: 8   VPQRRERLYII----DFLNPSVEFKFPTPLGI-----KPRLGDIL---EEHIDDKSTISN 55
            PQ RER+ ++    D +  + E+K  +   I     + R+ DIL    E    K T++ 
Sbjct: 310 TPQHRERIVLVGVRKDLVEKNPEYKKLSLKNIEVPQERLRVSDILTDLSEEETKKYTLTP 369

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
            LW         ++  G GFG+GL   ++  A T TLSARYYKDGSEI
Sbjct: 370 NLWNYLYHYALKHQSKGNGFGFGLVDPSNPNAVTRTLSARYYKDGSEI 417


>gi|300813374|ref|ZP_07093725.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512517|gb|EFK39666.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 347

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 5   DFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNKLWEG 60
           DFGVPQ RER+YI+ F   ++P+ +F FP        + DI+EE     K  +S+   E 
Sbjct: 151 DFGVPQNRERIYIVAFREDISPN-KFIFPEETDDTKVIADIMEEKETSPKYYLSDVYLES 209

Query: 61  HQKRKENNKIAGKGFGYGLFFENS 84
            +K K+ +K  G GFGY +   NS
Sbjct: 210 LRKHKQRHKAKGNGFGYEIRDVNS 233


>gi|317497298|ref|ZP_07955621.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895367|gb|EFV17526.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 363

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A D+GVPQ RER++ I  LN   +F+FP    +K +L DILE+++D K  + N
Sbjct: 204 LNARDYGVPQNRERVFCISELNGENKFEFPKSRELKLKLYDILEKNVDSKYYLKN 258


>gi|238917714|ref|YP_002931231.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238873074|gb|ACR72784.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 311

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + + D+GVPQ R R YI+ F N +  F+FP    +   L D+LE  +DDK  +S+++
Sbjct: 148 LNSADYGVPQTRNRTYIVCFDNQNARFEFPEKKKLNKTLQDLLEPEVDDKYFLSDRI 204


>gi|309378773|emb|CBX22599.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 342

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +    F++P P GI+    DI E + +  K  +S + 
Sbjct: 160 VNAKDFGVPQNRERIFIVGFRGDTDIKYFEYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 219

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  +K K+ ++  G GFGY
Sbjct: 220 IDTLRKHKQRHEEKGNGFGY 239


>gi|332188292|ref|ZP_08390019.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
 gi|332011688|gb|EGI53766.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
          Length = 423

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD-------------------------- 41
           VPQ R+R+ ++ F    V F +   L   P + D                          
Sbjct: 229 VPQHRQRILLVGF-QKDVGFDWEKVLAKMPAVADGPKLASILHREDGTEEEGEDDDRRFI 287

Query: 42  ILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           + +  +  K  ++++LW+  Q   E ++ AG GFG  +      T+ TLSARYYKDGSEI
Sbjct: 288 LADGKVQKKYVLTDRLWQYLQGYAEKHRQAGNGFGCSVVGPKD-TSRTLSARYYKDGSEI 346


>gi|27497145|gb|AAO17336.1| methylase [Neisseria lactamica]
          Length = 384

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +    F++P P GI+    DI E + +  K  +S + 
Sbjct: 202 VNAKDFGVPQNRERIFIVGFRGDTDIKYFEYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 261

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  +K K+ ++  G GFGY
Sbjct: 262 IDTLRKHKQRHEEKGNGFGY 281


>gi|282879499|ref|ZP_06288233.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306646|gb|EFA98672.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 438

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           D+G+PQ RER++ I F  P V+F FP P+ ++ ++ D LE+++D K  +  K
Sbjct: 212 DYGIPQHRERIFCIGFHTP-VKFAFPAPIPLEYKMYDFLEDYVDTKYFLKEK 262


>gi|154484133|ref|ZP_02026581.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
           27560]
 gi|149735175|gb|EDM51061.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
           27560]
          Length = 366

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILEEH-IDDKSTISNKLWEGH 61
           DFGVPQ RER+YI+ F        F  P+G KP   + DI+EE  +  K  +S    E  
Sbjct: 168 DFGVPQNRERIYIVAFRKDINSENFEFPVGNKPDTCIRDIMEEQEVSVKYYLSTTYIETL 227

Query: 62  QKRKENNKIAGKGFGY 77
           ++ K  +   G GFGY
Sbjct: 228 KRHKARHAAKGNGFGY 243


>gi|313892290|ref|ZP_07825883.1| modification methylase HpaII [Dialister microaerophilus UPII 345-E]
 gi|313119428|gb|EFR42627.1| modification methylase HpaII [Dialister microaerophilus UPII 345-E]
          Length = 329

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N      F FP     +  L DI+E E +  +  +S   
Sbjct: 147 LNSKNFGVPQNRERIYIVAFRNDISPENFDFPEGTDTEKTLKDIIEKEEVSSRYYLSETY 206

Query: 58  WEGHQKRKENNKIAGKGFGYGL 79
                K KE  K  G GFGY +
Sbjct: 207 LNSLIKHKERQKAKGNGFGYEI 228


>gi|12229852|sp|O30868|MTH2_HAEAE RecName: Full=Modification methylase HaeII; Short=M.HaeII; AltName:
           Full=Cytosine-specific methyltransferase HaeII
 gi|2425087|gb|AAB70829.1| HaeII methylase [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    D    +N     
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILES---DDVVPNNYFLSD 199

Query: 61  HQKRKENNKIA 71
             KRK  + I 
Sbjct: 200 ELKRKRLSSIT 210


>gi|254282099|ref|ZP_04957067.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
 gi|219678302|gb|EED34651.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
          Length = 356

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 8   VPQRRERLYIIDFLNPSVE----FKFPT-PLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           V QRR R +++   N        F+FP  P G  P L  +L +  D K T+S+K+W GH+
Sbjct: 192 VAQRRVRCFMVAVRNDIAANRGAFEFPKFPEGSIP-LRSVLSKEPDPKYTLSDKMWAGHK 250

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            R   N   G GF   L       +NT+ ARY KD  E
Sbjct: 251 ARTIRNVERGTGF-TALEANLDKPSNTIVARYGKDAKE 287


>gi|319776347|ref|YP_004138835.1| Cytosine-specific methyltransferase [Haemophilus influenzae F3047]
 gi|329123500|ref|ZP_08252064.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
 gi|317450938|emb|CBY87164.1| Cytosine-specific methyltransferase [Haemophilus influenzae F3047]
 gi|327471082|gb|EGF16537.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    D    +N     
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILES---DDVVPNNYFLSD 199

Query: 61  HQKRKENNKIA 71
             KRK  + I 
Sbjct: 200 ELKRKRLSSIT 210


>gi|68250112|ref|YP_249224.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
 gi|68058311|gb|AAX88564.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    D    +N     
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILES---DDVVPNNYFLSD 199

Query: 61  HQKRKENNKIA 71
             KRK  + I 
Sbjct: 200 ELKRKRLSSIT 210


>gi|148826843|ref|YP_001291596.1| modification methylase HaeII [Haemophilus influenzae PittGG]
 gi|148718085|gb|ABQ99212.1| modification methylase HaeII [Haemophilus influenzae PittGG]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    D    +N     
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILES---DDVVPNNYFLSD 199

Query: 61  HQKRKENNKIA 71
             KRK  + I 
Sbjct: 200 ELKRKRLSSIT 210


>gi|219870523|ref|YP_002474898.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219690727|gb|ACL31950.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 350

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F        F +P PL  K    D+ E++ +  K  +S + 
Sbjct: 170 LNAKDFGVPQNRERIFIVGFRQDLAINSFYYPAPLNRKVCFNDVKEKNVVPTKYYLSTQY 229

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            E  +K K  ++  G GFGY
Sbjct: 230 IETLRKHKARHQDKGNGFGY 249


>gi|127459|sp|P15446|MTH2_HAEPA RecName: Full=Modification methylase HpaII; Short=M.HpaII; AltName:
           Full=Cytosine-specific methyltransferase HpaII
 gi|43630|emb|CAA35705.1| unnamed protein product [Haemophilus parainfluenzae]
 gi|305377|gb|AAA20481.1| HpaII modification methyltransferase [Haemophilus parainfluenzae]
          Length = 358

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A +FGVPQ RER+YI+ F   +    F +P PL       DI EE  +  K  +S + 
Sbjct: 176 VNAKNFGVPQNRERIYIVGFHKSTGVNSFSYPEPLDKIVTFADIREEKTVPTKYYLSTQY 235

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  +K KE ++  G GFGY
Sbjct: 236 IDTLRKHKERHESKGNGFGY 255


>gi|167854713|ref|ZP_02477492.1| cell division protein MukB [Haemophilus parasuis 29755]
 gi|167854127|gb|EDS25362.1| cell division protein MukB [Haemophilus parasuis 29755]
          Length = 361

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F        F +P PL  K    D+ E++ +  K  +S + 
Sbjct: 181 LNAKDFGVPQNRERIFIVGFRQDLAINSFYYPAPLNRKVCFNDVKEKNVVPTKYYLSTQY 240

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            E  +K K  ++  G GFGY
Sbjct: 241 IETLRKHKARHQDKGNGFGY 260


>gi|145629543|ref|ZP_01785341.1| modification methylase HaeII [Haemophilus influenzae 22.1-21]
 gi|144978386|gb|EDJ88150.1| modification methylase HaeII [Haemophilus influenzae 22.1-21]
          Length = 219

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    D    +N     
Sbjct: 45  LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILES---DDVVPNNYFLSD 100

Query: 61  HQKRKENNKIA 71
             KRK  + I 
Sbjct: 101 ELKRKRLSSIT 111


>gi|292670064|ref|ZP_06603490.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
 gi|292648252|gb|EFF66224.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
          Length = 377

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 5   DFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKLWEGH 61
           DFGVPQ RER+YI+ F N   S  F FP        + DI+E E +  K  +S       
Sbjct: 185 DFGVPQNRERIYIVAFRNDIDSTGFAFPEGHDSNTTIRDIMEAEEVSVKYYLSTVYLASL 244

Query: 62  QKRKENNKIAGKGFGY 77
           ++ K +++  G GFGY
Sbjct: 245 RRHKAHHEALGHGFGY 260


>gi|159026722|emb|CAO89036.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 455

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DFG+PQ RER++I+     ++    FKFP PLGI P++ DILE+
Sbjct: 169 LNAYDFGLPQNRERVFIVGIRKDIDNYERFKFPLPLGIHPKVLDILED 216


>gi|166368611|ref|YP_001660884.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090984|dbj|BAG05692.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 464

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DFG+PQ RER++I+     ++    FKFP PLGI P++ DILE+
Sbjct: 177 LNAYDFGLPQNRERVFIVGIRKDIDNYERFKFPLPLGIHPKVLDILED 224


>gi|119493789|ref|ZP_01624358.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
 gi|119452484|gb|EAW33671.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
          Length = 689

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           + A DFG+PQ+RER YI+ FL  ++ F FP P+  +  L +ILE  E + DKS  +++  
Sbjct: 150 LNALDFGLPQKRERTYIVGFLE-NIHFSFPKPIQKRVSLSEILEPDEQV-DKSLFASEFI 207

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSA 85
           +    +K   ++  K F   ++ EN +
Sbjct: 208 Q----KKRIQRLKVKPFYPSIWHENKS 230


>gi|288559284|ref|YP_003422770.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288541994|gb|ADC45878.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 339

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK--STISNKLW 58
           + + D+GVPQ RER++I+ F +    FKFP P   K  + D+LE+++ D   S I++   
Sbjct: 170 LNSKDYGVPQNRERIFIVGFKDNVNTFKFPLPFENKANINDLLEKNVKDHELSGIASDHL 229

Query: 59  EGHQKRKENNKIAGKGF 75
           + H +    NK   K +
Sbjct: 230 KKHYEEFLKNKKVNKNY 246


>gi|255279955|ref|ZP_05344510.1| modification methylase EcoRII [Bryantella formatexigens DSM 14469]
 gi|255269728|gb|EET62933.1| modification methylase EcoRII [Bryantella formatexigens DSM 14469]
          Length = 311

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + + DFGVPQ R R Y++ F N   EF FP    ++  L D+LE+ + +K  +S ++
Sbjct: 148 LNSADFGVPQTRNRTYLVCFSNQKAEFTFPQTEPLESTLQDLLEQDVAEKYFLSERI 204


>gi|290969050|ref|ZP_06560585.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781006|gb|EFD93599.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
          Length = 333

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           + + DFGVPQ RER+YI+ F   + P+  F+FP        + DI+EE     K  +S+ 
Sbjct: 147 LNSKDFGVPQNRERIYIVAFREDIAPNT-FRFPEKTDDTKVIADIMEEKEPSSKYYLSDV 205

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
                +K K+ ++  G GFGY
Sbjct: 206 YLASLRKHKQRHQAKGNGFGY 226


>gi|167751356|ref|ZP_02423483.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
 gi|167655602|gb|EDR99731.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
          Length = 475

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N     +F+FP       R+ DI+EE+ +  K  +S+  
Sbjct: 294 LNSKNFGVPQNRERIYIVAFRNDIAPEKFEFPQGNDDTKRIKDIIEENPVPAKYYLSDVY 353

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            E  ++ K  ++  G GFGY
Sbjct: 354 LETLRRHKARHESKGNGFGY 373


>gi|329298618|ref|ZP_08255954.1| DNA cytosine methylase [Plautia stali symbiont]
          Length = 465

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 8   VPQRRERLYIID----------FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +PQ RER+ ++           F   ++   +P  +   P L  +LE     K  +S  L
Sbjct: 275 LPQHRERIVLVGIRRDTGLSEGFSLRALAALYPPEV---PALHSLLELQPAAKYILSPTL 331

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           W    +  + +K  G GFG+GL    +      TLSARYYKDGSEI
Sbjct: 332 WHYLYQYAKKHKAKGNGFGFGLNDPRNPHCCVRTLSARYYKDGSEI 377


>gi|326573696|gb|EGE23654.1| DNA-cytosine methyltransferase [Moraxella catarrhalis O35E]
          Length = 408

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + + D+G+PQ RER+++I F N P   F+FP P+ ++  + D LE++ D K  +  K
Sbjct: 180 LNSKDYGIPQHRERIFVIGFKNKPKNGFEFPQPIELEYTMQDFLEDYTDSKYFLKEK 236


>gi|296114006|ref|YP_003627944.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
 gi|295921700|gb|ADG62051.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
          Length = 410

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + + D+G+PQ RER+++I F N P   F+FP P+ ++  + D LE++ D K  +  K
Sbjct: 182 LNSKDYGIPQHRERIFVIGFKNKPKNGFEFPQPIELEYTMQDFLEDYTDSKYFLKEK 238


>gi|15676724|ref|NP_273868.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7226061|gb|AAF41239.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308389005|gb|ADO31325.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
 gi|316984499|gb|EFV63467.1| modification methylase HpaII [Neisseria meningitidis H44/76]
 gi|325129944|gb|EGC52743.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325140023|gb|EGC62552.1| DNA-cytosine methyltransferase [Neisseria meningitidis CU385]
 gi|325206334|gb|ADZ01787.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|218767941|ref|YP_002342453.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|6900408|emb|CAB72018.1| putative cytosine-specific methyltransferase [Neisseria
           meningitidis]
 gi|121051949|emb|CAM08255.1| putative modification methylase [Neisseria meningitidis Z2491]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|313668701|ref|YP_004048985.1| modification methylase [Neisseria lactamica ST-640]
 gi|313006163|emb|CBN87625.1| putative modification methylase [Neisseria lactamica 020-06]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 145 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 201


>gi|166368121|ref|YP_001660394.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
 gi|166090494|dbj|BAG05202.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
          Length = 347

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           + A  FGVPQ R R++I+ F   LN    F +P P   +  L DILEE  +  K  +SN+
Sbjct: 145 LNARYFGVPQNRPRIFIVGFREDLN-IYHFSYPQPTHQETCLKDILEEKEVSVKYYLSNQ 203

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
             E   K K  ++  G GFGY
Sbjct: 204 YLETLFKHKARHQHKGNGFGY 224


>gi|304387865|ref|ZP_07370039.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|254670653|emb|CBA06706.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha153]
 gi|254672637|emb|CBA06420.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
 gi|261392815|emb|CAX50396.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis 8013]
 gi|304338130|gb|EFM04266.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410190|emb|CBY90526.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134031|gb|EGC56686.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325203903|gb|ADY99356.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|161869767|ref|YP_001598934.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161595320|gb|ABX72980.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|325127899|gb|EGC50802.1| DNA-cytosine methyltransferase [Neisseria meningitidis N1568]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|121634611|ref|YP_974856.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|4887086|gb|AAD32180.1|AF125564_2 putative site specific DNA methyltransferase [Neisseria
           meningitidis]
 gi|120866317|emb|CAM10058.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|325132026|gb|EGC54724.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325135954|gb|EGC58564.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325137780|gb|EGC60355.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142075|gb|EGC64502.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198036|gb|ADY93492.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325202381|gb|ADY97835.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325207867|gb|ADZ03319.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|325144138|gb|EGC66445.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325200491|gb|ADY95946.1| DNA-cytosine methyltransferase [Neisseria meningitidis H44/76]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 179 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 235


>gi|306828113|ref|ZP_07461376.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429650|gb|EFM32696.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 214

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER++ +  L     + FP    +  RL D+LEE +D+K  +S
Sbjct: 150 LNAKDYGVPQNRERVFCVSILGDHEPYIFPEKQELTIRLKDVLEEDVDEKYYLS 203


>gi|331270911|ref|YP_004385622.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
 gi|329127303|gb|AEB77247.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 12/66 (18%)

Query: 1   MKACDFGVPQRRERLYII-------DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           M   D+G+P  R RLYI+       DF     ++KFPT + +K  + D+LE+ ++DK  +
Sbjct: 151 MNTSDYGLPHTRRRLYIVGQRKDLGDF-----DYKFPTEIELKLNVQDLLEKDVNDKYYL 205

Query: 54  SNKLWE 59
           ++K+++
Sbjct: 206 TDKMYK 211


>gi|254443346|ref|ZP_05056822.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198257654|gb|EDY81962.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 349

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVE-FKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           +KA DFG+ Q+RER++I+ F     VE F +P     + ++ DILE  H   +  ++ K 
Sbjct: 176 LKASDFGLAQKRERVFIVGFRKSLGVEGFSYPEKGNDRSKISDILEPSHSVGQWLLTKKS 235

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
               +      K+AG G GY +  EN
Sbjct: 236 LACLRDHSSKQKLAGNGHGYAILDEN 261


>gi|56461628|ref|YP_156909.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
 gi|56180638|gb|AAV83360.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ R+R Y++ F      F FP P  IK  +G +LE+  +  S IS  L + 
Sbjct: 240 LNASDFGVPQNRKRFYLVAFDGKDCGFSFPQPPMIKADIGTLLEKGAEGYS-ISEHLQKT 298

Query: 61  HQKRKENNK 69
           +  +K++ +
Sbjct: 299 YLFKKDDGR 307


>gi|150026305|ref|YP_001297131.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772846|emb|CAL44330.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHI-DDKSTISNK 56
           + A +FGVPQ RER+YI+ F   LN S  F++P PL   P    + E+ +   K  +S +
Sbjct: 239 VNAKNFGVPQNRERIYIVGFRQDLNIS-SFEYPEPLENNPTFESVKEKLVPPTKYYLSTQ 297

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN 83
             +     K  +   G GFGY +  +N
Sbjct: 298 YVQTLINHKARHASKGNGFGYAIIPDN 324


>gi|159027151|emb|CAO86782.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           + A  FGVPQ R R++I+ F   LN    F +P P   +  L DILEE  +  K  +SN+
Sbjct: 145 LNARYFGVPQNRPRIFIVGFREDLN-IYHFSYPQPTHPETCLKDILEEKEVSVKYYLSNQ 203

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
             E   K K  ++  G GFGY
Sbjct: 204 YLETLFKHKARHENKGNGFGY 224


>gi|269121452|ref|YP_003309629.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268615330|gb|ACZ09698.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A ++ +PQ RERL+ +  L+  V++ FP P  +   L D+LE+ +D+K  I+
Sbjct: 150 LNALNYEIPQNRERLFCLSILDDKVKYNFPGPKKLNILLKDLLEKEVDEKYFIN 203


>gi|261252209|ref|ZP_05944782.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935600|gb|EEX91589.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
          Length = 584

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLG--IKPR----LGDILEEHIDDKS---TISNKLW 58
           +PQ RER+ ++         K    L    KP     L DIL E  D+ S   T++  LW
Sbjct: 307 LPQHRERVVLVGVRKDLTIDKSKLSLNNIQKPTERVPLKDILCELSDEDSSKYTLTPNLW 366

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
                    ++  G GFG+GL   ++    T TLSARY+KDGSEI
Sbjct: 367 NYLYNYALKHQTQGNGFGFGLVDPSNINTVTRTLSARYHKDGSEI 411


>gi|288576182|ref|ZP_05978340.2| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288566126|gb|EFC87686.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P    F+FP  + ++  + D LE++ D K  +  K
Sbjct: 179 MNSKDYGIPQHRERIFVVGFHTPPTNGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 235


>gi|149369548|ref|ZP_01889400.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
 gi|149356975|gb|EDM45530.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
          Length = 421

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-----LNPSVEFKFPTPLGIKPRLGDILE-EHIDDKSTIS 54
           + A  FGVPQ RER++I+ F     +N    FK+P P   +  L +ILE E +  K  +S
Sbjct: 241 LNAKKFGVPQNRERIFIVGFRKDLGIN---NFKYPEPTDTEAILENILEAEEVSVKYYLS 297

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
               +  +  +  ++  G GFGY +   N+ T N +
Sbjct: 298 EVYLQTLRNHRARHESKGNGFGYEI-IPNNGTANAV 332


>gi|296313699|ref|ZP_06863640.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
 gi|296839717|gb|EFH23655.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LGD+LE   D
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGDLLENDRD 188


>gi|327403407|ref|YP_004344245.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327318915|gb|AEA43407.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           M A +FGVPQ RER++I+ F   LN    F++P P+       D+ EE  +  K  +S  
Sbjct: 241 MNAKNFGVPQNRERIFIVGFRKDLNID-SFEYPLPVSKSVTFQDVREEKEVSVKYYLSET 299

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
                 K KE +   G GFG+
Sbjct: 300 YLNTLVKHKERHASKGNGFGF 320


>gi|302671270|ref|YP_003831230.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302395743|gb|ADL34648.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 579

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RERL+++ F   L+  VEF FP  + ++ ++ D L
Sbjct: 354 LNARDYGVPQNRERLFVVGFRNDLDLDVEFSFPQAIELEKKMQDFL 399


>gi|325269501|ref|ZP_08136117.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988120|gb|EGC20087.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 388

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A D+G+PQ RERLY + F     +FK+P P+ ++ ++ D LE++ +
Sbjct: 180 LNARDYGIPQTRERLYCVGF-KKKTKFKYPAPIPLRYKMYDFLEDYTN 226


>gi|291530358|emb|CBK95943.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 5   DFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKLWEGH 61
           +FGVPQ RER+YI+ F N      F FP        L DI E + +  K  +S+   +  
Sbjct: 158 NFGVPQNRERIYIVAFRNDIAPDNFDFPESTDTNKCLLDIRERNPVPAKYYLSDVYVDTL 217

Query: 62  QKRKENNKIAGKGFGY 77
           +K K  ++  G GFGY
Sbjct: 218 RKHKARHEAKGNGFGY 233


>gi|313674544|ref|YP_004052540.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941242|gb|ADR20432.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVE-FKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A D+GVPQ+RER++I+ F  +  +E F++P P        D+ EE  +  K  +SN  
Sbjct: 242 INAKDYGVPQKRERIFIVGFRKDLKIETFEYPEPSKSPVSFEDVKEEEPVSVKYYLSNTY 301

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
               +K K  +   G GFGY +  ++    + +
Sbjct: 302 LNTLKKHKARHLGKGNGFGYAVIADDEIANSVV 334


>gi|170719133|ref|YP_001784281.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827262|gb|ACA32633.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 408

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + ++G+PQ RER++++ F  +P   F+FPT + ++  + D LE++ D K  +  K
Sbjct: 180 MNSKNYGIPQHRERIFVVGFKTSPKGGFQFPTKIPLERTMQDFLEDYTDSKYFLKEK 236


>gi|159026805|emb|CAO86650.1| ngoBIM [Microcystis aeruginosa PCC 7806]
          Length = 331

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ+RER++I+ F   +  F +P P   +  L +ILEE++ D    S K+ + 
Sbjct: 156 LNALNFGLPQKRERIFIVGF-REARGFIWPKPALSRTSLTEILEENVSDFYYASEKIQKS 214

Query: 61  HQKRKENNK 69
              ++E  K
Sbjct: 215 RLLKREGKK 223


>gi|209524941|ref|ZP_03273486.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494590|gb|EDZ94900.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFG+PQ R+R++I+     +N    F+FP PL + P+L D + E +  K  I  K 
Sbjct: 160 INASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNLHPKLFDFV-EGVSQKPVIKKKF 218


>gi|282859944|ref|ZP_06269032.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587347|gb|EFB92564.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 448

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           + A +FGVPQ RER+YI+ F   LN    F +P P        DI E   +  K  +S  
Sbjct: 258 LNAANFGVPQHRERVYIVGFRKDLNIKA-FNYPMPTDNSKTFADIKEATTVSSKYYLSTT 316

Query: 57  LWEGHQKRKENNKIAGKGFGY 77
             +     K  +   G GFGY
Sbjct: 317 YLDTLIAHKARHAAKGHGFGY 337


>gi|313678561|ref|YP_004056301.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950401|gb|ADR24996.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKS 51
           + A D+G +PQ RER+YI+ F +      F FP P+ ++  + D LE ++DD S
Sbjct: 145 LNAKDYGDIPQNRERIYIVGFKDKHSHDAFSFPLPVKLRTSINDCLEVNVDDDS 198


>gi|254804105|ref|YP_003082326.1| putative type II DNA modification methyltransferase [Neisseria
           meningitidis alpha14]
 gi|254667647|emb|CBA03458.1| putative type II DNA modification methyltransferase [Neisseria
           meningitidis alpha14]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YII F + ++ F FP P+     LG++LE   D
Sbjct: 142 LNTLDFGLPQKRERIYIIGFSD-NIPFYFPEPINQYRPLGELLENDRD 188


>gi|291320332|ref|YP_003515594.1| modification methylase Bsp6I [Mycoplasma agalactiae]
 gi|290752665|emb|CBH40638.1| Modification methylase Bsp6I [Mycoplasma agalactiae]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDD 49
           + A D+G +PQ RER+YI+ F +      F FP P+ +K  L D LE ++DD
Sbjct: 145 LNAKDYGDIPQNRERIYIVGFKDKHSYDIFSFPLPVKLKTSLNDCLEVNVDD 196


>gi|254445875|ref|ZP_05059351.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198260183|gb|EDY84491.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ R+RLYI+       S EFKFP   G + RL D+L
Sbjct: 147 LNASDYGVPQARKRLYIVGIRKDLGSGEFKFPETSGARVRLKDLL 191


>gi|281491829|ref|YP_003353809.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375540|gb|ADA65046.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFP---TPLGIKPRLGDILEEHIDDKSTIS 54
           ++A ++G+PQ+RER++I+     LN    F  P   +PL   P L  +L++  D+K   S
Sbjct: 159 LRAVEYGIPQKRERVFIVGIRNDLNKKFHFADPPIQSPLDYTP-LKKVLQKDFDEKYYFS 217

Query: 55  NKLWEGHQKRKENNKIAGKG 74
           ++  EG  K K  +KI  KG
Sbjct: 218 DRAVEGMLKSKM-SKIMNKG 236


>gi|218248203|ref|YP_002373574.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060473|ref|YP_003138361.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218168681|gb|ACK67418.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256590639|gb|ACV01526.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 460

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFG+PQ R+R++++   N    S  ++FP PL I P++ DIL++  + K     KL
Sbjct: 168 LNAYDFGLPQNRDRVFLVGIRNDIEGSQNYQFPDPLNIHPKVLDILDDLKNIKPIKKVKL 227

Query: 58  WE 59
            E
Sbjct: 228 SE 229


>gi|12229862|sp|Q59603|MTB1_NEIGO RecName: Full=Modification methylase NgoBI; Short=M.NgoBI; AltName:
           Full=Cytosine-specific methyltransferase NgoBI;
           Short=M.NgoI
 gi|5924404|gb|AAB03206.2| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]
          Length = 317

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 188


>gi|194099739|ref|YP_002002874.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|240013125|ref|ZP_04720038.1| NgoIM [Neisseria gonorrhoeae DGI18]
 gi|240015568|ref|ZP_04722108.1| NgoIM [Neisseria gonorrhoeae FA6140]
 gi|240114103|ref|ZP_04728593.1| NgoIM [Neisseria gonorrhoeae MS11]
 gi|240114658|ref|ZP_04728720.1| NgoIM [Neisseria gonorrhoeae PID18]
 gi|240120196|ref|ZP_04733158.1| NgoIM [Neisseria gonorrhoeae PID24-1]
 gi|240122493|ref|ZP_04735449.1| NgoIM [Neisseria gonorrhoeae PID332]
 gi|240126658|ref|ZP_04739544.1| NgoIM [Neisseria gonorrhoeae SK-92-679]
 gi|254492718|ref|ZP_05105889.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|260441536|ref|ZP_05795352.1| NgoIM [Neisseria gonorrhoeae DGI2]
 gi|268600171|ref|ZP_06134338.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268600304|ref|ZP_06134471.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268602536|ref|ZP_06136703.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268681085|ref|ZP_06147947.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268685237|ref|ZP_06152099.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268685565|ref|ZP_06152427.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|193935029|gb|ACF30853.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|226511758|gb|EEH61103.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|268584302|gb|EEZ48978.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268584435|gb|EEZ49111.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268586667|gb|EEZ51343.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268621369|gb|EEZ53769.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268625521|gb|EEZ57921.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268625849|gb|EEZ58249.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|317165226|gb|ADV08767.1| NgoIM [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 188


>gi|59802299|ref|YP_209011.1| NgoIM [Neisseria gonorrhoeae FA 1090]
 gi|240081825|ref|ZP_04726368.1| NgoIM [Neisseria gonorrhoeae FA19]
 gi|59719194|gb|AAW90599.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA 1090]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 188


>gi|307152213|ref|YP_003887597.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982441|gb|ADN14322.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 317

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 9/65 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL-GIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++I+  L P + F++P P+  IKP L +ILE      +T++   + 
Sbjct: 159 LNALDFGLPQKRERIFIVGCLEP-IPFEWPMPVRTIKP-LKEILE------TTVAASYYA 210

Query: 60  GHQKR 64
             Q R
Sbjct: 211 SEQIR 215


>gi|268597921|ref|ZP_06132088.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
 gi|268551709|gb|EEZ46728.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
          Length = 320

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 147 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 193


>gi|268595734|ref|ZP_06129901.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291044897|ref|ZP_06570606.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397972|ref|ZP_06642178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|268549123|gb|EEZ44541.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291011791|gb|EFE03787.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611918|gb|EFF40987.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 320

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 147 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 193


>gi|239999928|ref|ZP_04719852.1| NgoIM [Neisseria gonorrhoeae 35/02]
 gi|240116859|ref|ZP_04730921.1| NgoIM [Neisseria gonorrhoeae PID1]
 gi|240127204|ref|ZP_04739865.1| NgoIM [Neisseria gonorrhoeae SK-93-1035]
          Length = 278

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE   D
Sbjct: 105 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRD 151


>gi|167747653|ref|ZP_02419780.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239625035|ref|ZP_04668066.1| modification methylase Rho11sI [Clostridiales bacterium 1_7_47_FAA]
 gi|167653015|gb|EDR97144.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239521421|gb|EEQ61287.1| modification methylase Rho11sI [Clostridiales bacterium 1_7_47FAA]
          Length = 504

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A ++G+PQ RER+Y++       + +F FP P+    RL DILE+ +D+K  +S+
Sbjct: 158 LNAKNYGIPQNRERVYLVLIKKECDNGKFVFPEPMENGRRLMDILEDEVDEKYYLSD 214


>gi|166367724|ref|YP_001659997.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
 gi|166090097|dbj|BAG04805.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
          Length = 330

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ+RER++I+ F   +  F +P P   +  L +ILEE++ D    S ++ + 
Sbjct: 156 LNALNFGLPQKRERIFIVGF-REARGFIWPKPALSRTTLTEILEENVSDFYYASARIQKS 214

Query: 61  HQKRKENNK 69
              ++E  K
Sbjct: 215 RFLKREGKK 223


>gi|189096062|pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
           13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGSGERIYSTRGIAITLSA 253


>gi|49476998|ref|YP_035184.1| modification methylase HpaII (cytosine-specific methyltransferase
           HpaII) [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328554|gb|AAT59200.1| modification methylase HpaII (Cytosine-specific methyltransferase
           HpaII) [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 373

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPR----------LGDILEEHIDD 49
           + + +FGVPQ R R+YI+ F       K  + PL   P+          + D+LE+++ +
Sbjct: 164 LNSRNFGVPQNRPRIYIVGFNQRLYRDKIESMPLFTLPKSRSRKKIYDSVRDVLEDNVGE 223

Query: 50  KSTISNKLWEGHQKRKENNKIAGKGFGYGL 79
           K  +S    E  +K KE     G GFGY +
Sbjct: 224 KYYLSEGYLETLKKHKEAQGKKGNGFGYSI 253


>gi|319956919|ref|YP_004168182.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
           16511]
 gi|319419323|gb|ADV46433.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
           16511]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 6   FGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +G+PQ RER +++ F + +    F+FP  + +K  L D+LE  +D+K  +++K  E
Sbjct: 150 YGLPQNRERYFLVGFKSKTAGERFRFPKKVPLKLILSDVLENKVDEKYYLTDKALE 205


>gi|50513617|pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
           Methyltransferase: An Insight Into Protein-Protein
           Interactions
 gi|50513618|pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
           Methyltransferase: An Insight Into Protein-Protein
           Interactions
          Length = 327

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYG-LFFENSATTNTLSA 92
            + +N+  E    +     I GKG G+G   +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKG-GWGERIYSTRGIAITLSA 253


>gi|118138268|pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
           Sequence Discrimination Of Dna Methyltransferase M.Hhai
          Length = 327

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|159795737|pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
           Observable Precatalytic Intermediates During Dna
           Cytosine Methylation
          Length = 327

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|160877870|pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
           Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|127455|sp|P05102|MTH1_HAEPH RecName: Full=Modification methylase HhaI; Short=M.HhaI; AltName:
           Full=Cytosine-specific methyltransferase HhaI
 gi|1065144|pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
           And S-Adenosyl-L-Homocysteine
 gi|1942412|pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
           Unmodified Dna And Adohcy
 gi|1942415|pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
           Dna And Adohcy
 gi|2392799|pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
           Hemimethylated Dna And Adohcy
 gi|3660437|pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
           And Dna Containing 4'-Thio-2'deoxycytidine At The Target
 gi|4139672|pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139675|pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139680|pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4558252|pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
           And Hemimethylated Dna Containing
           5,6-Dihydro-5-Azacytosine At The Target
 gi|4699814|pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
           Formed In The Presence Of A Short Nonpsecific Dna
           Oligonucleotide
 gi|24158912|pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
           Covalent Complex With Dna Methyltransferase
 gi|52695513|pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
           Abasic South Carbocyclic Sugar At Its Target Site
 gi|85544385|pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
           Oligonucleotide Containing 2-Aminopurine Adjacent To The
           Target Base (Pcgc:gmgc) And Sah
 gi|85544388|pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
           Containing 2-Aminopurine Opposite To The Target Base (
           Gcgc:gmpc) And Sah
 gi|85544391|pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
           Containing 2-Aminopurine Outside The  Recognition
           Sequence (Paired With G) And Sah
 gi|116667789|pdb|2HR1|A Chain A, Ternary Structure Of Wt M.Hhai C5-Cytosine Dna
           Methyltransferase With Unmodified Dna And Adohcy
 gi|157831356|pdb|1HMY|A Chain A, Crystal Structure Of The Hhal Dna Methyltransferase
           Complexed With S-Adenosyl-L-Methionine
 gi|290560089|pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
           Propane Diol In Place Of The Deoxycytidine Residue
           Targeted For Methylation.
 gi|148949|gb|AAA24989.1| DNA methylase [Haemophilus haemolyticus]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|161761159|pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
           Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|2599488|gb|AAB84141.1| FauI DNA methyltransferase [Flavobacterium aquatile]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 1   MKACDFGVPQRRERLYIIDF--LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + + +FGVPQ+RER++I+ F   +  + FKFP P+ ++     +L+E ID K+    K W
Sbjct: 165 LNSSEFGVPQKRERVFIVGFRDFDDYLNFKFPQPITLEGS-KIVLKEVIDKKADTEEK-W 222

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
              QK  +      +    G   + +   NT+S+   K
Sbjct: 223 FFSQKAVDGMLRVREKMNKGRVQDLNQPCNTISSHLAK 260


>gi|148826164|ref|YP_001290917.1| modification methylase [Haemophilus influenzae PittEE]
 gi|148716324|gb|ABQ98534.1| modification methylase [Haemophilus influenzae PittEE]
 gi|162532590|gb|ABY16693.1| probable methylase [Haemophilus influenzae]
 gi|309973308|gb|ADO96509.1| Probable cytosine-specific DNA methyltransferase [Haemophilus
           influenzae R2846]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + ++G+PQ RER++++ F  P    F FP  + ++  + D LE++ D K  +  K
Sbjct: 181 MNSKNYGIPQHRERIFVVGFKTPPQGGFMFPAEIPLEHSMQDFLEDYTDSKYYLKEK 237


>gi|291530357|emb|CBK95942.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 3   ACDFGVPQRRERLYIIDF--LNPSVEFKFPTPLGIKPRLGDILEEHID-DKS----TISN 55
           ACD+G+PQ R R YI+ F     SV F FP    ++  + D++++    DKS      S 
Sbjct: 145 ACDYGIPQHRTRTYIVAFRDFAKSVLFDFPQKQQLQKHIFDVIDKRTKADKSFYLDCNSR 204

Query: 56  KLWEGHQKRKENNKI 70
           + ++  Q   +NN+I
Sbjct: 205 QYYKMKQSIDDNNQI 219


>gi|237742049|ref|ZP_04572530.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
 gi|229429697|gb|EEO39909.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 3   ACDFGVPQRRERLYII----DFLNPSVEFKFPTP-----LGIKPRLGDILEEHIDDKSTI 53
           A DFG+PQRR R YII    D L  +     P P     L I   L D+LE   D K  +
Sbjct: 170 AKDFGIPQRRLRTYIIGFRKDLLQDNNFILEPLPKNRTDLKIYKNLNDLLEFQNDIKYYV 229

Query: 54  SNKLWEGHQKRKENNKIAGKGFGY 77
           ++   +  ++ K  + + G GFG+
Sbjct: 230 ASGYLKTLERHKLKHSLKGNGFGF 253


>gi|323650448|gb|ADX97301.1| M.Fnu4HI [Fusobacterium nucleatum]
          Length = 351

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEE-HIDDKSTIS-- 54
           + A D+G +PQ RER+YI+ F N      F+FP PL +   + D+LE+ +ID+K   S  
Sbjct: 145 LNAKDYGNIPQNRERIYIVGFKNEEHFKNFEFPFPLELTRNIEDMLEKNNIDEKYYYSKE 204

Query: 55  -NKLWEGHQKRKEN 67
            NK ++  +K   N
Sbjct: 205 KNKFYDTLEKEITN 218


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 561

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+G+PQ RER++I+     ++  + F FP       RL D LE  +D+K  IS K 
Sbjct: 149 LNAKDYGIPQNRERVFIVSIRKDIDTGI-FSFPKGFDNGLRLKDFLENEVDEKYYISEKA 207

Query: 58  WEG 60
            +G
Sbjct: 208 TQG 210


>gi|126660265|ref|ZP_01731380.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
 gi|126618440|gb|EAZ89194.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEE 45
           + + DFGVPQ RER++I+           ++FP PL ++ RL D+L+E
Sbjct: 173 INSYDFGVPQNRERVFIVGIRKDRKNCHHYQFPKPLKVQIRLLDVLDE 220


>gi|326798326|ref|YP_004316145.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
 gi|326549090|gb|ADZ77475.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-EEHIDDKSTISNKL 57
           + A +FGVPQ RER++I+ +        F++P PL     + DI  EE +  K  +S + 
Sbjct: 229 VNAKNFGVPQNRERIFIVGYRKDLGIDRFEYPEPLDEPVAIEDIFEEEEVSVKYYLSTQY 288

Query: 58  WEGHQKRKENNKIAGKGFGY 77
            +  ++ K  ++  G GFG+
Sbjct: 289 LKTLKEHKARHESKGNGFGF 308


>gi|308185227|ref|YP_003929360.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
 gi|308061147|gb|ADO03043.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 16/102 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +   DFG+PQ+R R++I+     S   +EF FP  +  K    D+L++ ++ K  IS K+
Sbjct: 141 LNTLDFGIPQQRNRVFIVALRKNSFTNLEFVFPAKIPCKISTLDLLDKQVELKYFISQKM 200

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATT---NTLSARYYK 96
            +          I GKG   G   E S  T    TL+A  +K
Sbjct: 201 IK---------TILGKG-TKGYIVEPSIDTPIAKTLTATMHK 232


>gi|296126993|ref|YP_003634245.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018809|gb|ADG72046.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 324

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEE 45
           + A D+G+PQ+RER+YI+ F   LN   +F FP P+ +   L D L E
Sbjct: 152 LNASDYGIPQKRERIYIVCFRKDLNIK-KFDFPKPIELIKHLEDFLLE 198


>gi|268607976|ref|ZP_06141707.1| cytosine-specific DNA-methyltransferase Sau96I [Ruminococcus
           flavefaciens FD-1]
          Length = 407

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I     L   ++F FPTP   KP L D+L
Sbjct: 224 LNAWDYGVAQKRERLITIGIRNDLTNQIKFTFPTPHEYKPVLRDVL 269


>gi|12084381|pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
           Mutant (T250g) In Complex With Dna And Adohcy
 gi|85544394|pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
           Oligonucleotide Containing 2-Aminopurine As A Target
           Base (Gpgc:gmgc) And Sah
          Length = 327

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKG 74
            + +N+  E    +     I GKG
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKG 235


>gi|317057160|ref|YP_004105627.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449429|gb|ADU22993.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I     L   + F FPTP   KP L D+L
Sbjct: 224 LNAWDYGVAQKRERLITIGIRNNLTDKISFSFPTPHEYKPVLRDVL 269


>gi|54297036|ref|YP_123405.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
 gi|53750821|emb|CAH12229.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + + DFGVPQ+RER YI+ F++ +V F+FP   G+   L  ILE+    +  I NK +  
Sbjct: 146 LNSLDFGVPQKRERTYIVGFID-NVPFEFPKG-GVPFNLESILEK----EQQIPNKYYAS 199

Query: 61  HQKRKE 66
              R++
Sbjct: 200 DYIRQK 205


>gi|219855710|ref|YP_002472832.1| hypothetical protein CKR_2367 [Clostridium kluyveri NBRC 12016]
 gi|219569434|dbj|BAH07418.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFP--TPLGIKPRLGDILEEHIDDKSTISN 55
           M A +FG+PQRRER+ I+ F +P +   +F FP   P    P +  IL EH     +IS 
Sbjct: 245 MDAQNFGLPQRRERIVIVGF-HPDLGINDFSFPKGNPDNKVP-INAIL-EHNPTGYSISK 301

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           +L E +  +K++ K         + F+++   NTL A Y+K
Sbjct: 302 RLQESYLFKKDDGK------PQIVDFDSTIQVNTLVASYHK 336


>gi|153955289|ref|YP_001396054.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348147|gb|EDK34683.1| Predicted DNA methylase [Clostridium kluyveri DSM 555]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFP--TPLGIKPRLGDILEEHIDDKSTISN 55
           M A +FG+PQRRER+ I+ F +P +   +F FP   P    P +  IL EH     +IS 
Sbjct: 242 MDAQNFGLPQRRERIVIVGF-HPDLGINDFSFPKGNPDNKVP-INAIL-EHNPTGYSISK 298

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           +L E +  +K++ K         + F+++   NTL A Y+K
Sbjct: 299 RLQESYLFKKDDGK------PQIVDFDSTIQVNTLVASYHK 333


>gi|220930232|ref|YP_002507141.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000560|gb|ACL77161.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 416

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFP--TPLGIKPRLGDILEEHIDDKSTISN 55
           M A +FG+PQRRER+ I+ F +P +   +F FP   P    P +  IL EH     +IS 
Sbjct: 242 MDAQNFGLPQRRERIVIVGF-HPDLGINDFSFPKGNPDNKVP-INAIL-EHNPTGYSISK 298

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           +L E +  +K++ K         + F+++   NTL A Y+K
Sbjct: 299 RLQESYLFKKDDGK------PQIVDFDSTIQVNTLVASYHK 333


>gi|79835495|gb|ABB52098.1| Mod [Arthrospira platensis]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+     +N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|284051619|ref|ZP_06381829.1| DNA-cytosine methyltransferase [Arthrospira platensis str. Paraca]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+     +N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|315506801|ref|YP_004085688.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
 gi|315413420|gb|ADU11537.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
          Length = 412

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           ++A D+GVPQ R R  ++         F +P P G  P +GD L E + ++       W 
Sbjct: 148 LQASDYGVPQLRPRFILVALKTEDAPYFHWPEPQGAPPTVGDTLVELMAERG------WR 201

Query: 60  GHQKRKEN-NKIA 71
           G Q   E  NK+A
Sbjct: 202 GAQAWAERANKVA 214


>gi|269119458|ref|YP_003307635.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268613336|gb|ACZ07704.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 383

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK---STISNKL 57
           + A D+ +PQRR+R++ +       ++ FP P+ +K RL D+LE+ + +K     I N  
Sbjct: 148 LNAKDYRIPQRRKRVFCVSIFGNE-KYVFPKPVELKLRLRDMLEKEVPEKYYLKDIDNNK 206

Query: 58  WEGHQKRKENNKIAGK 73
           +  +  +K+   I+G+
Sbjct: 207 FHVNMNKKQGYFISGE 222


>gi|291570812|dbj|BAI93084.1| cytosine-specific DNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 443

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+     +N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|237739124|ref|ZP_04569605.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
 gi|229423724|gb|EEO38771.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDIL 43
           + A ++GV Q+RERL I+    D +N  + F FPTP   KP L DIL
Sbjct: 179 LNAWNYGVAQKRERLIIVGIRNDLIN-KLNFLFPTPHKYKPVLRDIL 224


>gi|291549830|emb|CBL26092.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 410

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDIL 43
           + A D+GVPQ+RERL  I   N  VE   F FP     KP L DIL
Sbjct: 227 LNAWDYGVPQKRERLITIGIRNDLVEKTSFTFPKEQEYKPVLRDIL 272


>gi|319779706|ref|YP_004130619.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109730|gb|ADU92476.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDIL 43
           + +CD+G+PQ R R++++ F       EFKFP P  +   + DIL
Sbjct: 152 LNSCDYGIPQSRARIFMVAFREDLKHQEFKFPAPKNLDKYVEDIL 196


>gi|320326214|gb|EFW82269.1| cytosine-specific DNA-methyltransferase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 448

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +FG+PQ RER+YI+  L P  +F +P        +  +L++H  D   +S ++
Sbjct: 153 NFGIPQIRERVYIVGSLIPLEDFSWPKKTDAPTSIDTVLDDHPADAKKLSTQV 205


>gi|312281368|ref|YP_004022731.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181897|gb|ADQ42066.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           + + ++G VPQ RER+YI+ FL+ S+   FKFP P+ +   + DI++
Sbjct: 146 LNSLEYGNVPQNRERVYIVGFLDKSMYEAFKFPEPVSLTVTIHDIIK 192


>gi|309379398|emb|CBX21965.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  GVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
          G PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 2  GFPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 52


>gi|167920593|ref|ZP_02507684.1| cytosine-specific DNA methylase [Burkholderia pseudomallei BCC215]
          Length = 454

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +FG+PQ RER+YI+    P   F++P  +     +  IL+++ DD   +S ++
Sbjct: 153 NFGIPQIRERVYIVGSTEPLTSFQWPEMIDATTSIETILDKNPDDARQLSAQV 205


>gi|293596744|ref|ZP_05263998.2| DNA-methyltransferase [Listeria monocytogenes J2818]
 gi|293592003|gb|EFG00338.1| DNA-methyltransferase [Listeria monocytogenes J2818]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A DFG+PQ RER++++  L  +  F+FP  +     L D ++  +D
Sbjct: 150 LNARDFGIPQNRERVFVVSVLGNNTGFQFPEKIESAMSLKDYIDFEVD 197


>gi|254901064|ref|ZP_05260988.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
           J0161]
          Length = 320

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A DFG+PQ RER++++  L  +  F+FP  +     L D ++  +D
Sbjct: 143 LNARDFGIPQNRERVFVVSVLGNNTGFQFPEKIESAMSLKDYIDFEVD 190


>gi|160934346|ref|ZP_02081733.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
 gi|156867019|gb|EDO60391.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
          Length = 433

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I   N  V+   F FP P   KP L DIL
Sbjct: 251 LNAWDYGVAQKRERLITIGIRNDLVQKIKFDFPAPHKYKPVLRDIL 296


>gi|317500279|ref|ZP_07958506.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087487|ref|ZP_08336423.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898322|gb|EFV20366.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330410467|gb|EGG89898.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGVPQ+RERL  +   N     V F FP     KP L DIL
Sbjct: 227 LNAWDFGVPQKRERLITVGIRNDLVGKVSFSFPKEHNYKPVLRDIL 272


>gi|167751358|ref|ZP_02423485.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
 gi|167655604|gb|EDR99733.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
          Length = 316

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK 50
           ACD+G+PQ R R YI+ F +      F+FP    ++  L D++++ +  K
Sbjct: 145 ACDYGIPQHRTRTYIVAFKSQKACDSFRFPEKCELQKHLFDVIDKTVKGK 194


>gi|189339547|pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
           Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RE +Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKRENIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|189096047|pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
           Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+ ER+Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKNERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|148380278|ref|YP_001254819.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148289762|emb|CAL83870.1| putative C-5 cytosine-specific DNA methylase [Clostridium botulinum
           A str. ATCC 3502]
          Length = 340

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 5   DFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           D+G PQ RER++ I       +  FKFP P+     +  IL+E++D K    NK
Sbjct: 156 DYGSPQSRERMFCISIRKDIDACLFKFPKPMDSIVPINTILDEYVDKKYYCINK 209


>gi|328947611|ref|YP_004364948.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447935|gb|AEB13651.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A DFGVPQ R+R +I+   NP+ E   PTP
Sbjct: 158 LCATDFGVPQTRKRFFILASKNPTTELSAPTP 189


>gi|291551321|emb|CBL27583.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 595

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + + ++G+PQ RERL+++ F   L  + +F FP P+ ++ ++ D L
Sbjct: 368 LNSKNYGIPQNRERLFVVGFREDLELAKKFSFPNPIPLRKKMKDFL 413


>gi|258511120|ref|YP_003184554.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477846|gb|ACV58165.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 395

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER++I+ F +  ++E+ FP P
Sbjct: 178 LNAADYGVPQKRERVFIVGFRSDLNIEWSFPNP 210


>gi|158431504|pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
           Methyltransferase With Unmodified Dna And Adohcy
          Length = 327

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-----EEH--IDDKS 51
           + A D+G+PQ+RE +Y+I F N      F+FP P  +   + D+L      EH  ID K 
Sbjct: 152 LNALDYGIPQKREAIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 52  TI-SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            + +N+  E    +     I GKG      +       TLSA
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSA 253


>gi|291544225|emb|CBL17334.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 407

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A ++GV Q+RERL  I     L   ++F FPTP   KP L D+L
Sbjct: 224 LNAWNYGVAQKRERLITIGIRNDLTNQIKFTFPTPHEYKPVLRDVL 269


>gi|320326171|gb|EFW82226.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER+++I F +   VE+ FP P
Sbjct: 181 VNAADYGVPQKRERVFLIGFRDDLEVEWSFPAP 213


>gi|254933776|ref|ZP_05267135.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
 gi|293585336|gb|EFF97368.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
          Length = 325

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A D+G+PQ RER++++  L  + EF+FP  +     L D ++  +D
Sbjct: 143 LNARDYGIPQNRERVFVVSVLGNNKEFQFPEKVKPVKSLKDYIDFDVD 190


>gi|332310450|gb|EGJ23545.1| DNA-methyltransferase (Dcm) [Listeria monocytogenes str. Scott A]
          Length = 325

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A D+G+PQ RER++++  L  + EF+FP  +     L D ++  +D
Sbjct: 143 LNARDYGIPQNRERVFVVSVLGNNKEFQFPEKVKPVKSLKDYIDFDVD 190


>gi|314055145|ref|YP_004063483.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
           virus 2]
 gi|313575036|emb|CBI70049.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
           virus 2]
          Length = 349

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           +KA + GVPQ+RERL+I+   +    F+FP P   +  L DIL
Sbjct: 152 LKAHEHGVPQKRERLFIVGSRDADFTFEFPEPSNNEVGLKDIL 194


>gi|310657624|ref|YP_003935345.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
           519]
 gi|308824402|emb|CBH20440.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 326

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISN 55
           M + +FGVPQ+RER+ II F  +  +EF FP  +         L  ++E  + +K   S 
Sbjct: 154 MNSVNFGVPQKRERVIIIGFRKDLELEFNFPEEIIANEWEFLNLSMVIESEVSEKYFFSE 213

Query: 56  KLWEGHQKRK 65
           K  +G  K++
Sbjct: 214 KAVQGMLKKR 223


>gi|309776146|ref|ZP_07671137.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916097|gb|EFP61846.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 456

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A D G+PQ RER ++I  L     ++FP    +  ++ D+LEE +D
Sbjct: 224 VDAADHGIPQHRERCFMISILG-EYSYRFPAGRKLHIQMKDLLEEKVD 270


>gi|325269502|ref|ZP_08136118.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988121|gb|EGC20088.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 393

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           D+GVPQ R+R+Y I F     +FK+P P+ +   + D L++  + +  +  K
Sbjct: 184 DYGVPQSRDRIYCIGF-KKETDFKYPAPIPLVKTVYDYLQKKFEKRYLLRQK 234


>gi|329769727|ref|ZP_08261128.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
 gi|328838089|gb|EGF87707.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
          Length = 406

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 5   DFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK 50
           D+G +PQ RER+YI+ FL      +F+FP  + ++ +L DI++  I +K
Sbjct: 159 DYGNIPQNRERIYIVGFLEKESYDKFEFPNEIKLETKLSDIIDFDIKEK 207


>gi|167630879|ref|YP_001681378.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
 gi|167593619|gb|ABZ85367.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GVPQ R R+  +   N  + +F FPT +   P +G+IL + +     I  K W
Sbjct: 145 LNASDYGVPQLRPRVVFVAIRNDLAADFTFPTEIMHAPTVGEILGDLMGANGWIGVKQW 203


>gi|331091845|ref|ZP_08340677.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402744|gb|EGG82311.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 410

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGVPQ+RERL  +   N     V F FP     KP L D+L
Sbjct: 227 LNAWDFGVPQKRERLITVGIRNDLVGKVSFSFPKEHDYKPVLRDVL 272


>gi|255018626|ref|ZP_05290752.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
           FSL F2-515]
          Length = 172

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ RER++++  L  + EF+FP  +     L D ++
Sbjct: 110 LNARDFGIPQNRERVFVVSVLGNNKEFQFPEKVEPVKSLKDYID 153


>gi|329767116|ref|ZP_08258644.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
 gi|328837841|gb|EGF87466.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
          Length = 396

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 5   DFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK 50
           D+G VPQ RER+YI+ FL      +F+FP  + ++ +L DI++  I +K
Sbjct: 149 DYGNVPQNRERIYIVGFLEKESFDKFEFPKKIKLETKLSDIIDFDIKEK 197


>gi|288929280|ref|ZP_06423125.1| modification methylase HphIA (Cytosine-specific methyltransferase
           HphIA) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329382|gb|EFC67968.1| modification methylase HphIA (Cytosine-specific methyltransferase
           HphIA) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 370

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           +KA +FGVP++RERL++I  LN S+E +
Sbjct: 159 VKAIEFGVPEKRERLFVIGTLNKSIELE 186


>gi|1709163|sp|P50188|MTN1_NOCAE RecName: Full=Modification methylase NaeI; Short=M.NaeI; AltName:
           Full=Cytosine-specific methyltransferase NaeI
 gi|775103|gb|AAC43325.1| NaeI modification methyltransferase [Lechevalieria aerocolonigenes]
          Length = 413

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFGVPQ R R  ++   N  +  F +P P G  P +G+ L      K  ++   WE
Sbjct: 148 LHASDFGVPQLRPRFVLVALQNKFAPYFTWPEPTGAAPTVGETL------KDLMAADGWE 201

Query: 60  GHQK 63
           G ++
Sbjct: 202 GAEE 205


>gi|34451619|gb|AAQ72366.1| TspRI methylase [Thermus sp. R]
          Length = 431

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A DFGVPQ R+R++ +  + P +EF++P P
Sbjct: 215 LNAADFGVPQHRKRIFFVG-VRPGIEFRWPRP 245


>gi|218439646|ref|YP_002377975.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218172374|gb|ACK71107.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 320

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ+RER++I+  L+P + F +P        L +ILE      + +S+  +  
Sbjct: 159 LNALDFGLPQKRERIFIVGCLDP-IPFIWPNSTRPFKPLQEILE------TQVSSSYYAS 211

Query: 61  HQKRKENNKIA 71
            Q RK  N++A
Sbjct: 212 EQIRK--NRLA 220


>gi|218135211|ref|ZP_03464015.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990596|gb|EEC56607.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
           43243]
          Length = 344

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEEHID 48
           + A ++GVPQ+RERL  I   N  V   E++FP     KP L D+L +  D
Sbjct: 152 LNAWNYGVPQKRERLITIGIRNDLVGKTEYRFPKAHSYKPVLRDVLLDCPD 202


>gi|291528318|emb|CBK93904.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 344

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEEHID 48
           + A ++GVPQ+RERL  I   N  V   E++FP     KP L D+L +  D
Sbjct: 152 LNAWNYGVPQKRERLITIGIRNDLVGKTEYRFPKAHSYKPVLRDVLLDCPD 202


>gi|291561285|emb|CBL40084.1| DNA-methyltransferase (dcm) [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + + D+GVPQ RER++I+       +  F+FP  + ++  +GD+L+E +  +  +S +  
Sbjct: 153 LNSADYGVPQGRERVFIVSIRKDVDDHSFRFPPVIPLEMCMGDLLDEEVPAEFYLSEEKT 212

Query: 59  EGHQKRKENN--KIAGKGFG 76
           +   +   N+   IA +G G
Sbjct: 213 QSVIRHDSNHPGHIADRGGG 232


>gi|127427|sp|P17044|MTBF_BACSU RecName: Full=Modification methylase BsuFI; Short=M.BsuFI; AltName:
           Full=Cytosine-specific methyltransferase BsuFI
 gi|39984|emb|CAA35888.1| unnamed protein product [Bacillus subtilis]
          Length = 409

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 14/101 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFP--TPLGIKPRLGDILEEHIDDKSTISN 55
           M A +FG+PQRRER+ I+ F +P +   +F FP   P    P +  IL EH     +IS 
Sbjct: 241 MDAQNFGLPQRRERIVIVGF-HPDLGINDFSFPKGNPDNKVP-INAIL-EHNPTGYSISK 297

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           +L E +  +K++ K         + F  +   NTL A Y+K
Sbjct: 298 RLQESYLFKKDDGK------PQIVDFRCTYQVNTLVASYHK 332


>gi|220929948|ref|YP_002506857.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000276|gb|ACL76877.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVE-FKFPTPLGIKPRLGDILEE 45
           + A ++G+PQ RER+Y++ F N  ++E F FP P  +K  + D L E
Sbjct: 152 LNAVNYGIPQNRERIYMVCFRNDLNIENFNFPKPFPLKRYVEDFLLE 198


>gi|307140960|ref|ZP_07500316.1| DNA-cytosine methyltransferase [Escherichia coli H736]
 gi|331645014|ref|ZP_08346131.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
 gi|331035989|gb|EGI08227.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
          Length = 413

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER++I+ F +   +E+ FP P
Sbjct: 192 VNAADYGVPQKRERVFIVGFRDDLEIEWSFPKP 224


>gi|269114810|ref|YP_003302573.1| Cytosine-specific DNA methyltransferase/Type II site-specific
           deoxyribonuclease [Mycoplasma hominis]
 gi|268322435|emb|CAX37170.1| Cytosine-specific DNA methyltransferase/Type II site-specific
           deoxyribonuclease [Mycoplasma hominis ATCC 23114]
          Length = 553

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDI 42
           + A DFGVPQ+RERL  I    D L+  + F+FP     KP + D+
Sbjct: 151 LNAWDFGVPQKRERLITIGVRQDLLS-KISFEFPMEHSYKPTMRDV 195


>gi|288928693|ref|ZP_06422539.1| modification methylase NgoBI (Cytosine-specific methyltransferase
           NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329677|gb|EFC68262.1| modification methylase NgoBI (Cytosine-specific methyltransferase
           NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 309

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-RLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER+ I+ F +      F      KP  L  ILEE  D    I  KL+ 
Sbjct: 142 LNAMDFGLPQKRERVIIVGFRDKMAYENFDFTFKKKPFNLATILEEEKD----IDPKLYA 197

Query: 60  GHQKR-KENNKIAGKGFGY-GLFFENSA 85
               R K     AGK   Y  ++ EN A
Sbjct: 198 SKTIREKRKASTAGKEVFYPSIWHENKA 225


>gi|195867949|ref|ZP_03079946.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|195660345|gb|EDX53605.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
          Length = 319

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEAFKYPCPITLTNTIRDVID 192


>gi|323178455|gb|EFZ64033.1| modification methylase NgoMIV [Escherichia coli 1180]
          Length = 377

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           A D+GVPQ R R+ ++      S  F++P+   I P +GD L +       +S   WEG 
Sbjct: 155 ASDYGVPQLRPRVLLVALRGKYSAHFRWPSETLIPPTVGDALFD------LMSQGGWEGA 208

Query: 62  QK-RKENNKIA 71
           +  RK  N IA
Sbjct: 209 EAWRKAANNIA 219


>gi|67922277|ref|ZP_00515790.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67855853|gb|EAM51099.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 226

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + A DFG+PQ+RER++II   +P + F F  P   +  L +I+E+ + +
Sbjct: 167 LNALDFGLPQKRERIFIIGLRDP-LNFTFKKPNISRKPLSEIIEKSVSE 214


>gi|171920707|ref|ZP_02931926.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185179015|ref|ZP_02964765.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024024|ref|ZP_02996783.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518336|ref|ZP_03003849.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|188524309|ref|ZP_03004347.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|198273488|ref|ZP_03206024.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550923|ref|ZP_03771872.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551062|ref|ZP_03772008.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903447|gb|EDT49736.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209104|gb|EDU06147.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019052|gb|EDU57092.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997975|gb|EDU67072.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195660089|gb|EDX53469.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|198250008|gb|EDY74788.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225378877|gb|EEH01242.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380077|gb|EEH02439.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 319

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEAFKYPCPITLTNTIRDVID 192


>gi|328946253|gb|EGG40397.1| modification methylase Sau96I [Streptococcus sanguinis SK1087]
          Length = 333

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RER+ ++     L   + F++P P   KP L DIL
Sbjct: 151 LNAWDYGVAQKRERMIMVGIRNDLTDKITFEYPEPHDYKPVLKDIL 196


>gi|254303554|ref|ZP_04970912.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323746|gb|EDK88996.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 492

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + + D+G+PQ RER++++ F   L    +F+FP P  ++  + D L +++  K  +  K
Sbjct: 265 LNSKDYGIPQNRERVFVVGFRKDLKLKKKFEFPRPFLLEKTMQDFLLDNVAGKYYLQEK 323


>gi|260866454|ref|YP_003232856.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257762810|dbj|BAI34305.1| predicted DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 356

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           A D+GVPQ R R+ ++      S  F++P+   I P +GD L +       +S   WEG 
Sbjct: 155 ASDYGVPQLRPRVLLVALRGKYSAHFRWPSETLIPPTVGDALFD------LMSQGGWEGA 208

Query: 62  QK-RKENNKIA 71
           +  RK  N IA
Sbjct: 209 EAWRKAANNIA 219


>gi|6272296|gb|AAF06073.1|AF072715_4 putative methylase [Mycoplasma mycoides subsp. capri]
          Length = 390

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
           + + D+G  Q RER++ I +L+    F FP PL  K  +  I++   D K
Sbjct: 229 VNSTDYGSCQNRERVFCISYLDKQKNFTFPKPLITKKEIDSIIKNDDDMK 278


>gi|210610944|ref|ZP_03288669.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
 gi|210152244|gb|EEA83251.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
          Length = 278

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ+RERL  I    D +N  ++F FP     KP L D+L
Sbjct: 95  LNAWDYGVPQKRERLITIGIRNDLVN-RIKFHFPEAHDYKPVLRDVL 140


>gi|77409601|ref|ZP_00786278.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae COH1]
 gi|77171795|gb|EAO74987.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae COH1]
          Length = 333

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RER+ ++   N  V    F++P P   KP L DIL
Sbjct: 151 LNAWDYGVAQKRERMIMVGIRNDLVNMTSFEYPKPHDYKPVLRDIL 196


>gi|270686639|ref|ZP_06222860.1| modification methylase DsaV [Haemophilus influenzae HK1212]
 gi|270316163|gb|EFA28145.1| modification methylase DsaV [Haemophilus influenzae HK1212]
          Length = 225

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHID 48
          +KA D+G+PQ R R ++I F +  V   F FP P+ +K  + D+ +   D
Sbjct: 18 LKASDYGLPQLRPRAFMIGFRDDHVLGNFSFPEPIPLKFTMSDVWKGKCD 67


>gi|289167263|ref|YP_003445530.1| type II DNA modification enzyme (methyltransferase
           cytosine-specific) [Streptococcus mitis B6]
 gi|288906828|emb|CBJ21662.1| type II DNA modification enzyme (methyltransferase
           cytosine-specific) [Streptococcus mitis B6]
          Length = 387

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 17/81 (20%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFP------TPLGIKPRLGDI--------L 43
           + A D+GVPQ RER+++I     LN   E+ FP       P  ++  +GD+         
Sbjct: 169 LNAKDYGVPQNRERVFLIGVRNDLNIEFEWSFPEKCTSENPFNLRDAIGDLPSLGNNDRA 228

Query: 44  EEHIDDKSTISNKLWEGHQKR 64
           +++++D  T    L  G+Q +
Sbjct: 229 DQYVEDPQTDYQILMRGNQDQ 249


>gi|119484300|ref|ZP_01618917.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
 gi|119457774|gb|EAW38897.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
          Length = 449

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 21/93 (22%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-------------------PRLGD 41
           + + +FG+PQ R R+Y+I  LN S +F   + LG K                   P++ D
Sbjct: 146 LNSVNFGLPQNRVRVYMIGVLNASPQFNLISDLGPKDSHSYNAVQLNLFSLQHFPPKVKD 205

Query: 42  ILEEHIDDKSTISNKLWEGHQKRKEN--NKIAG 72
           ILEE+ D     S +  +   K  +   NK+ G
Sbjct: 206 ILEENPDSSFDCSPEFSQALNKVVQGDLNKLHG 238


>gi|290343528|ref|YP_003494895.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
 gi|260160943|emb|CAY39643.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
          Length = 351

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           +KA + GVPQ+RERL+I+   +    F FP P      L DIL+
Sbjct: 154 LKAHEHGVPQKRERLFIVGSRDVDFTFDFPEPSANDVGLKDILK 197


>gi|154173655|ref|YP_001409100.1| cytosine-specific methyltransferase NlaX [Campylobacter curvus
           525.92]
 gi|112802981|gb|EAU00325.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
           curvus 525.92]
          Length = 352

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 12/80 (15%)

Query: 5   DFGVPQRRERLYIIDFL--NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-------- 54
           D+G+ Q RER+YI+ FL  +  + F F   + +   + D L++ +D+K  ++        
Sbjct: 156 DYGIAQNRERIYIVGFLDFDEYLNFDFAPRVPLTTAIRDYLDDEVDEKYYLNENAILSMV 215

Query: 55  --NKLWEGHQKRKENNKIAG 72
             N  + G    KE ++ AG
Sbjct: 216 DPNACFNGKFDPKETDECAG 235


>gi|239812977|ref|YP_002941924.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
 gi|239809042|gb|ACS26105.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
          Length = 370

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER++II   N  +++++FP P
Sbjct: 172 INAADYGVPQKRERVFIIGVRNDLNIQYEFPEP 204


>gi|309380076|emb|CBX21487.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 377

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL        + +  ++ + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKETHSEDRL--------NWEKYVTGEYWE 221

Query: 60  GHQKRKENNKIAGKGFG--YGLF 80
            H + K  NK   +     YG+F
Sbjct: 222 KHNEPKRFNKDIAEKLQKKYGIF 244


>gi|238025826|ref|YP_002910057.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae BGR1]
 gi|237875020|gb|ACR27353.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae BGR1]
          Length = 407

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER++I+ F +   V++ FP P
Sbjct: 182 VNAADYGVPQKRERVFIVGFRSDLDVDWSFPRP 214


>gi|166163613|gb|ABY83631.1| DNA methyltransferase Cfr42I [Citrobacter freundii]
          Length = 402

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+G+PQ+RER++I+ F +   +E+ FP P
Sbjct: 181 VNAADYGIPQKRERVFIVGFRDDLEIEWSFPKP 213


>gi|168335325|ref|ZP_02693422.1| DNA-cytosine methyltransferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 324

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + A D+GV Q R+R++ I F  + +++F+FP P   KP L DIL +  D+
Sbjct: 143 LNANDYGVAQDRKRVFYIGFRKDLNIKFEFPKPQEYKPVLRDILWDLKDN 192


>gi|209554428|ref|YP_002284952.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541929|gb|ACI60158.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 319

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEVFKYPCPITLTNTIRDVID 192


>gi|313668596|ref|YP_004048880.1| DNA cytosine methyltransferase [Neisseria lactamica ST-640]
 gi|313006058|emb|CBN87519.1| DNA cytosine methyltransferase [Neisseria lactamica 020-06]
          Length = 393

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL        + +  ++ + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKETHSEDRL--------NWEKYVTGEYWE 221

Query: 60  GHQKRKENNKIAGKGFG--YGLF 80
            H + K  NK   +     YG+F
Sbjct: 222 KHNEPKRFNKDIAEKLQKKYGIF 244


>gi|328947436|ref|YP_004364773.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447760|gb|AEB13476.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 439

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + + DF +PQ+RER Y + FL+ + +F FP    I   L DI++    D+S
Sbjct: 240 LSSLDFELPQKRERWYCVGFLSKT-DFVFPAGTKIHKNLRDIIDLDNQDES 289


>gi|309789600|ref|ZP_07684181.1| BsaWI methylase [Oscillochloris trichoides DG6]
 gi|308228336|gb|EFO81983.1| BsaWI methylase [Oscillochloris trichoides DG6]
          Length = 436

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A ++GVPQ RERL+II   + S+   FPTP
Sbjct: 173 LNAANYGVPQFRERLFIIATSDSSLPIIFPTP 204


>gi|325270473|ref|ZP_08137075.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987196|gb|EGC19177.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 365

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR---LGDILEEH--IDDKSTIS 54
           +KA ++G+PQRRER+ I+   +  +  +++P P+  +     L  +++E    D K   S
Sbjct: 158 LKAVEYGIPQRRERVIIVGIRDDLTFNYEYPAPVCTEAEATPLSAVIDELAITDSKYYFS 217

Query: 55  NKLWEGHQKRKENNK 69
            +  +G +K K N K
Sbjct: 218 ERAVQGVKKAKNNMK 232


>gi|161870123|ref|YP_001599293.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|225075874|ref|ZP_03719073.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
           NRL30031/H210]
 gi|296313674|ref|ZP_06863615.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|161595676|gb|ABX73336.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|224952820|gb|EEG34029.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
           NRL30031/H210]
 gi|296839734|gb|EFH23672.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 423

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLPTESS 207


>gi|15676920|ref|NP_274067.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|7226272|gb|AAF41432.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|325136241|gb|EGC58849.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325202033|gb|ADY97487.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325208214|gb|ADZ03666.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 423

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLPTESS 207


>gi|325130383|gb|EGC53149.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
          Length = 425

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLPTESS 207


>gi|197302809|ref|ZP_03167861.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
           29176]
 gi|197298046|gb|EDY32594.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+G+PQ+RER+Y++ F N      F +P P  +   + + L   +DD+  + +   
Sbjct: 152 LNAVDYGIPQKRERIYMVCFRNDLGITGFSYPKPFKLTRHVENFL---LDDEEMVKDLYV 208

Query: 59  E 59
           E
Sbjct: 209 E 209


>gi|313667088|gb|ADR72987.1| M2.BsmFI [Geobacillus stearothermophilus]
          Length = 365

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 15/82 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-------------LGIKPRLGDILEEHI 47
           + A D+GVPQRR+R++I+      V+F FP P             + ++  LGD+   + 
Sbjct: 146 LNAADYGVPQRRKRIFIVG-TREGVKFNFPLPTHNEKGDDGKLKWISVEEALGDLPSPNT 204

Query: 48  DDKSTISNKLWEGHQ-KRKENN 68
           D     S +    +Q K +ENN
Sbjct: 205 DGIVKYSKEPLTPYQLKMRENN 226


>gi|59801568|ref|YP_208280.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae FA
           1090]
 gi|194097887|ref|YP_002000932.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998362|ref|ZP_04718286.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|240113683|ref|ZP_04728173.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           MS11]
 gi|240116425|ref|ZP_04730487.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           PID18]
 gi|240117164|ref|ZP_04731226.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           PID1]
 gi|240125114|ref|ZP_04738000.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494438|ref|ZP_05107609.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae 1291]
 gi|260441646|ref|ZP_05795462.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|268594223|ref|ZP_06128390.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|268599750|ref|ZP_06133917.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae MS11]
 gi|268602094|ref|ZP_06136261.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID18]
 gi|268602852|ref|ZP_06137019.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID1]
 gi|268683710|ref|ZP_06150572.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
           SK-92-679]
 gi|291045024|ref|ZP_06570732.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|10444408|gb|AAG17898.1|AF297971_2 DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae]
 gi|59718463|gb|AAW89868.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae FA
           1090]
 gi|193933177|gb|ACF29001.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513478|gb|EEH62823.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae 1291]
 gi|268547612|gb|EEZ43030.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|268583881|gb|EEZ48557.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae MS11]
 gi|268586225|gb|EEZ50901.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID18]
 gi|268586983|gb|EEZ51659.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID1]
 gi|268623994|gb|EEZ56394.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
           SK-92-679]
 gi|291011027|gb|EFE03024.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|317163651|gb|ADV07192.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 377

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL        + +  ++ + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKRTHSEDRL--------NWEKYVTGEYWE 221

Query: 60  GHQKRKENNKIAGKGFG--YGLF 80
            H + K  NK   +     YG+F
Sbjct: 222 KHNEPKRFNKDIAEKLQKKYGIF 244


>gi|326571776|gb|EGE21785.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC7]
          Length = 458

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + + D+GVPQ RER Y +     S    F+FP       +L DI+E   +DKS I +K 
Sbjct: 261 LNSYDYGVPQFRERWYCVAIRKDSDNGRFEFPKNRDRTTKLRDIIESDNNDKSLILSKF 319


>gi|172038109|ref|YP_001804610.1| putative modification methylase [Cyanothece sp. ATCC 51142]
 gi|171699563|gb|ACB52544.1| putative modification methylase [Cyanothece sp. ATCC 51142]
          Length = 344

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ+RER++I+ F +P + F +  P  +   L +I+E+ + +    S ++   
Sbjct: 167 LNALNFGLPQKRERVFIVGFRDP-LAFIWKQPNILMKPLSEIIEKSVSEFYYASEQIQRN 225

Query: 61  HQKRKENN 68
              + + N
Sbjct: 226 RLAKYQGN 233


>gi|5420107|emb|CAB46561.1| cytosine-specific methyltransferase [Streptococcus thermophilus]
          Length = 316

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           M A D+G +PQ RER+YI+ F +     +F  P  + ++  + D+    ID  S + +K 
Sbjct: 145 MNAADYGNIPQNRERIYIVAFRDKEDYADFDLPKSIPLETSIKDV----IDFDSKVDDKF 200

Query: 58  WEGHQKRK 65
           +   +K K
Sbjct: 201 YYTAEKNK 208


>gi|296114087|ref|YP_003628025.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|295921781|gb|ADG62132.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|326560672|gb|EGE11040.1| cytosine-specific methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 318

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 8   VPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKR 64
           +PQ RER++II F   +  S+ F+FP  + +   + DIL+    D+S   +K  + HQK 
Sbjct: 155 IPQNRERIFIIAFDKNIFKSINFEFPNKIPLTKTIHDILDNKKQDESFYYHK-SKYHQKL 213

Query: 65  K 65
           K
Sbjct: 214 K 214


>gi|53804329|ref|YP_114062.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758090|gb|AAU92381.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 345

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-----NKL 57
           A D+GVPQ RER+ I+  L     F+ P P+ I P      ++ IDD + +      N +
Sbjct: 196 AADYGVPQTRERVLIVGTLPGVKPFEPPKPI-ISPSRYITAKQAIDDLAALDEDEEINHV 254

Query: 58  WE--GHQKRKENNKIAGKGFGY 77
           W   G    + N ++     GY
Sbjct: 255 WSRAGKSPEQGNRRLIADRPGY 276


>gi|327399867|ref|YP_004346898.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
           1112]
 gi|327182537|gb|AEA32972.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
           1112]
          Length = 401

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 5   DFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           D+G +PQ RER+Y++ F N      F FP P+ +   L DI++ H
Sbjct: 157 DYGNIPQNRERIYVVGFDNKEDYDRFDFPAPIKLTKTLHDIIDFH 201


>gi|257062089|ref|YP_003139977.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256592255|gb|ACV03142.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 456

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILE 44
           + + DFG+ Q R+R++I+     +  + +F FP PL + P+L + +E
Sbjct: 173 LNSYDFGLSQDRDRVFIVGIHQQIENAAQFSFPEPLNLSPKLYEFIE 219


>gi|218249004|ref|YP_002374375.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218169482|gb|ACK68219.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 456

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILE 44
           + + DFG+ Q R+R++I+     +  + +F FP PL + P+L + +E
Sbjct: 173 LNSYDFGLSQDRDRVFIVGIHQQIENAAQFSFPEPLNLSPKLYEFIE 219


>gi|257870038|ref|ZP_05649691.1| DNA methylase [Enterococcus gallinarum EG2]
 gi|257804202|gb|EEV33024.1| DNA methylase [Enterococcus gallinarum EG2]
          Length = 401

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+Y++ F N      F FP+ + +  +L D+++
Sbjct: 156 LNGKDYGNVPQNRERIYVVGFRNQQAFDNFHFPSKVELTTKLSDVID 202


>gi|269122857|ref|YP_003305434.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268314183|gb|ACZ00557.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 329

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + + DFG+PQ+RER+Y++ F   LN    F FP P  +   + D+L
Sbjct: 152 LNSLDFGIPQKRERIYMVCFRKDLNIK-NFIFPKPFKLSTFVEDLL 196


>gi|254825117|ref|ZP_05230118.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293594360|gb|EFG02121.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 326

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           +   DFG+PQ+RER+Y +  L+ P  +F       ++P + + LE  +DD  TI
Sbjct: 149 LNPMDFGIPQKRERIYTVSVLSGPQFDFSKLKKEPMRP-INEFLETDVDDIYTI 201


>gi|9622224|gb|AAF89681.1| cytosine-specific methyltransferase [Bacillus sp. LU11]
          Length = 365

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 15/82 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-------------LGIKPRLGDILEEHI 47
           + A D+GVPQRR+R++I+      ++F FP P             + ++  LGD+   + 
Sbjct: 146 LNAADYGVPQRRKRIFIVG-TREGIKFNFPLPTHNEKGNDGKLKWISVEEALGDLPSPNT 204

Query: 48  DDKSTISNKLWEGHQ-KRKENN 68
           D     S +    +Q K +ENN
Sbjct: 205 DGIVKYSTEPLNPYQLKMRENN 226


>gi|85703012|ref|ZP_01034116.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
 gi|85671940|gb|EAQ26797.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
          Length = 387

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTP 32
           + + ++GVPQRRER++++ F  +  +E+ FP P
Sbjct: 180 LNSANYGVPQRRERVFLVGFRADTGIEWHFPKP 212


>gi|229824483|ref|ZP_04450552.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC 51271]
 gi|229786084|gb|EEP22198.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC 51271]
          Length = 406

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 8   VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKS 51
           +PQ RER+YI+ F +      F+FP  + +  +L D+++ HI + +
Sbjct: 164 IPQNRERIYIVGFRDKQAFDAFQFPESVDLTTKLDDVIDFHIAENA 209


>gi|254411906|ref|ZP_05025682.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181628|gb|EDX76616.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 456

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDIL 43
           + + DFG+PQ R+R++I+   N    S  F FP PLG   +L D++
Sbjct: 173 LNSYDFGLPQDRDRVFIVGIRNDIEKSKSFDFPKPLGKPIKLYDVI 218


>gi|223937258|ref|ZP_03629164.1| DNA-cytosine methyltransferase [bacterium Ellin514]
 gi|223894043|gb|EEF60498.1| DNA-cytosine methyltransferase [bacterium Ellin514]
          Length = 408

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-------LGIKPRLGDILEEH 46
           + A D+GVPQ RER++I+ F +   +E+ FP P       +  K   GD  E+H
Sbjct: 186 LNAADYGVPQFRERVFIVGFRHDLGIEWSFPKPTHSYDALVKAKWVTGDYWEQH 239


>gi|315604954|ref|ZP_07880010.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313349|gb|EFU61410.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 322

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPL-GIKPRLGDILEEHIDDKSTISNKLW 58
           + A DFGVPQ R R+  + F + +   F++P+P     P +G+ L + + ++       W
Sbjct: 147 LNASDFGVPQLRPRVIAVGFRHDTAPSFEYPSPFQNAAPTVGETLADLMAERGWEGASAW 206

Query: 59  EGHQKRKENNKIAG 72
                R     + G
Sbjct: 207 AAQANRIAPTLVGG 220


>gi|308185228|ref|YP_003929361.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
 gi|308061148|gb|ADO03044.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
          Length = 368

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF--LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A ++G+PQ R RL+++ F        F FP+P  +   + D+L+++I + + +S
Sbjct: 187 LDARNYGIPQGRRRLFLVGFKEQEKCANFTFPSPKELTITMQDLLQDNIKEGNLLS 242


>gi|302873652|ref|YP_003842285.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686624|ref|ZP_07629070.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576509|gb|ADL50521.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 445

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 12/80 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-------LGIKPRLGDILEEHIDDKSTI 53
           M A ++GVPQRR R+  I + +  V  ++P P       L I+  + D++ E       +
Sbjct: 182 MDAANYGVPQRRNRVIFIAYRDDVVAPQYPEPTVTEETKLTIEDAITDLIRER-----RV 236

Query: 54  SNKLWEGHQKRKENNKIAGK 73
            N+++ G   + + + I G+
Sbjct: 237 RNRIFNGRLSQFQQDSINGR 256


>gi|10954474|ref|NP_039765.1| DNA cytosine-5 methylase subunit A [Methanothermobacter
           thermautotrophicus]
 gi|266583|sp|P29567|MTHT_METTF RecName: Full=Modification methylase MthTI; Short=M.MthTI; AltName:
           Full=Cytosine-specific methyltransferase MthTI
 gi|44641|emb|CAA48436.1| TIM [Methanothermobacter thermautotrophicus]
 gi|149743|gb|AAA73370.1| TIM [Methanothermobacter thermautotrophicus]
          Length = 330

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R+R++I+ +  + +++F+FP PL  K  L D + +  + K  +     E
Sbjct: 144 LNAKDYGVPQDRKRVFIVGYREDLNLKFEFPKPLNKKVTLRDAIGDLPEPKPAL-----E 198

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            ++   EN ++    +  G F     + N + +
Sbjct: 199 KNRSNGENLEVPNHEYMTGTFSSRYMSRNRVRS 231


>gi|323487872|ref|ZP_08093130.1| cytosine-specific methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323398606|gb|EGA91394.1| cytosine-specific methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 367

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + + DFGVPQ+RER++ I FLN  ++
Sbjct: 149 LNSADFGVPQKRERVFFIGFLNKDID 174


>gi|57506196|ref|ZP_00372116.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
           RM3195]
 gi|57015523|gb|EAL52317.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
           RM3195]
          Length = 315

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 8   VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHID 48
           +PQ RER+YII FL+      F FP  + +  ++  +LE+ +D
Sbjct: 150 IPQNRERIYIIGFLDFHTYESFHFPAKIKLTQKIQHLLEKGVD 192


>gi|313677762|ref|YP_004055758.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944460|gb|ADR23650.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 378

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 3   ACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGI---KPRLGDILEEHI--DDKSTISN 55
           A ++GVPQ+RER++II F N      F FP P  +   K +L +++++    D+K   S 
Sbjct: 167 ASEYGVPQKRERVFIIGFKNYEDFAYFNFPQPTTLNDSKVKLKEVIDKKANKDEKWFFSQ 226

Query: 56  KLWEGHQK-RKENNK 69
           +  +G  + +K+ NK
Sbjct: 227 RAVDGMMRVQKKMNK 241


>gi|303231468|ref|ZP_07318199.1| modification methylase HhaI family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513905|gb|EFL55916.1| modification methylase HhaI family protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 411

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G +PQ RER+YI+ FL  S    F FP  + +   L DI++
Sbjct: 154 LNGKDYGNIPQNRERIYIVGFLEKSAYDAFIFPDEIPLTTSLSDIID 200


>gi|157265308|ref|YP_001467867.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|157265426|ref|YP_001467984.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
 gi|156905203|gb|ABU96847.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|156905321|gb|ABU96964.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
          Length = 368

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLG 40
           + A D+GVPQ+RER++I+   +  P  +F FP P    P++ 
Sbjct: 162 LNAADYGVPQKRERVFIVGVRSDLPG-DFAFPLPTHANPQVA 202


>gi|296393765|ref|YP_003658649.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180912|gb|ADG97818.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 393

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 3   ACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRL----GDILEEH 46
           A D+GVPQRR R++I+ F   +     F  PT  G   RL    GD  E H
Sbjct: 183 AADYGVPQRRHRVFIVGFRSDVRAGWAFPSPTHSGEALRLAQVRGDYFERH 233


>gi|325912423|ref|ZP_08174818.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
 gi|325475765|gb|EGC78936.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
          Length = 314

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +   D+GVPQ+RER+Y++ F   +N  V F FP P  +   + D L    +  S I ++
Sbjct: 131 LNPVDYGVPQKRERIYMLCFRNDINREV-FTFPRPFKLNKFVEDFLISDYEVNSLIVDR 188


>gi|251811836|ref|ZP_04826309.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875124|ref|ZP_06283997.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|251804633|gb|EES57290.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295889|gb|EFA88410.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           SK135]
          Length = 329

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL----GIKPRLGDILEEHIDDKSTISNK 56
           ++  D+ +PQ+R+R++I+ + N  +EF +P  L     IK  + D+      +KS I N 
Sbjct: 153 LQTSDYNIPQKRQRVFIVGYKN--IEFNYPEKLKRKVTIKEAISDLPPLKNGEKSKIPNH 210

Query: 57  LWEGHQK 63
               H +
Sbjct: 211 FAMNHSQ 217


>gi|256822924|ref|YP_003146887.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796463|gb|ACV27119.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
          Length = 419

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 12/61 (19%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP-----------SVEFKFPTPLGIKPRLGDILEEHID 48
           + + DFG VPQ RER+YII F +            + EF +P P+ +   + D+L++ + 
Sbjct: 239 LNSMDFGDVPQNRERIYIIGFKDEANWQNNKGATRTSEFSWPEPIRLSKSVRDLLDKQVS 298

Query: 49  D 49
           +
Sbjct: 299 E 299


>gi|254671396|emb|CBA08870.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
          alpha153]
          Length = 157

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
          + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 42 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 91


>gi|312902257|ref|ZP_07761465.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|283466064|emb|CBG92839.1| hypothetical protein [Enterococcus casseliflavus]
 gi|310634316|gb|EFQ17599.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 470

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDILEE 45
           + A ++GV Q+RER+ II   N   E     FKFP     +P L D+L++
Sbjct: 286 LNAWNYGVAQKRERIVIIGIRNDLFEQQQYSFKFPKEYTYQPVLRDVLKD 335


>gi|254442311|ref|ZP_05055787.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198256619|gb|EDY80927.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 338

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFP 30
           + + DFGVPQ RER+Y +    D +N + +F FP
Sbjct: 154 VSSVDFGVPQMRERVYFVGVRKDLVNSNFDFTFP 187


>gi|257867246|ref|ZP_05646899.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873580|ref|ZP_05653233.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801302|gb|EEV30232.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807744|gb|EEV36566.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
          Length = 470

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDILEE 45
           + A ++GV Q+RER+ II   N   E     FKFP     +P L D+L++
Sbjct: 286 LNAWNYGVAQKRERIVIIGIRNDLFEQQQYSFKFPKEYTYQPVLRDVLKD 335


>gi|119512301|ref|ZP_01631388.1| DNA modification methylase [Nodularia spumigena CCY9414]
 gi|119463081|gb|EAW44031.1| DNA modification methylase [Nodularia spumigena CCY9414]
          Length = 502

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDIL----EEHIDDK 50
           + + D+GVPQ R R+YII F       +F  P     K +LGDIL    E+ ID++
Sbjct: 147 INSFDYGVPQNRIRVYIIGFHKQEYLEKFALPKQTDKKRKLGDILGITSEQKIDNQ 202


>gi|316984658|gb|EFV63622.1| modification methylase NlaIV [Neisseria meningitidis H44/76]
          Length = 171

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 56  LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 105


>gi|289167787|ref|YP_003446056.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907354|emb|CBJ22191.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 346

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 22/105 (20%)

Query: 3   ACDFGVPQRRERLYIIDFL-NPSVEFKFP----------TPLGIKPRLGDILEEHIDDKS 51
           A  +GVPQ+RER++I+    + +  F+FP          TPL +      IL++ ID+K 
Sbjct: 161 ATKYGVPQKRERVFIVGIRKDLNFTFEFPEEPIQNVEDYTPLKV------ILQQDIDEKY 214

Query: 52  TISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
             S +  +G    K     +GK    G   +    +NT+S+   K
Sbjct: 215 YFSERAVQGMLNSK-----SGKKMNKGRAQDIEQPSNTVSSHLAK 254


>gi|331677320|ref|ZP_08377999.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331075055|gb|EGI46371.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 415

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           +   +FGVPQ R R+YII  L   V    P  LG K
Sbjct: 146 LNTSNFGVPQNRVRIYIIASLEKEVTLTIPNDLGAK 181


>gi|197303495|ref|ZP_03168534.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
           29176]
 gi|197297493|gb|EDY32054.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 5   DFGVPQRRERLYIIDFL-----NPSVEFKFPTPLG----IKPRLGDILEEHIDDKSTISN 55
           +FG+PQ R R+YI+ F      N         P+     I   + ++L+ ++DDK  ++ 
Sbjct: 168 EFGLPQNRPRVYIMAFSKKIYGNAIKLLNAQLPISRDETIFRDVTEVLDTNVDDKYYMAE 227

Query: 56  KLWEGHQKRKENNKIAGKGFGY 77
              E  ++ K   K  G GFGY
Sbjct: 228 GYLETLKRHKARQKKNGYGFGY 249


>gi|148988377|ref|ZP_01819824.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926058|gb|EDK77132.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 343

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 22/105 (20%)

Query: 3   ACDFGVPQRRERLYIIDFL-NPSVEFKFP----------TPLGIKPRLGDILEEHIDDKS 51
           A  +GVPQ+RER++I+    + +  F+FP          TPL +      IL++ ID+K 
Sbjct: 161 ATKYGVPQKRERVFIVGIRKDLNFTFEFPEEPIQNVEDYTPLKV------ILQQDIDEKY 214

Query: 52  TISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
             S +  +G    K     +GK    G   +    +NT+S+   K
Sbjct: 215 YFSERAVQGMLNSK-----SGKKMNKGRAQDIEQPSNTVSSHLAK 254


>gi|328912201|gb|AEB63797.1| Modification methylase Rho11sI [Bacillus amyloliquefaciens LL3]
          Length = 503

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 37/130 (28%)

Query: 6   FGVPQRRERLYII-------------------DFLNP-----------SVEFKFPTPLGI 35
           F VPQ RER+YII                   D L+            S  FK+     +
Sbjct: 154 FNVPQNRERIYIIGVREDLIENDEWVLEKGRNDVLSKGKKRLKELNIKSFNFKWSAQDIV 213

Query: 36  KPRLGDILEEHIDDKSTIS----NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLS 91
             RL +ILEE++D+K  +S    +KL E  +K KE + +   G   G  + N+  T    
Sbjct: 214 GQRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEKDVVFVGGINVGKRWLNNGKT---Y 270

Query: 92  ARYYKDGSEI 101
           +R +K G+ +
Sbjct: 271 SRNFKQGNRV 280


>gi|331270912|ref|YP_004385623.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
 gi|329127304|gb|AEB77248.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
          Length = 349

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 1   MKACDFGVPQRRERLYII---DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FG+PQ RER+++I   ++++   + KF        RL DIL+  +D++  I N
Sbjct: 149 LNAKNFGIPQNRERIFVIGIREYIDNK-QMKFNEGKDYGYRLKDILQNQVDERFYIDN 205


>gi|901818|gb|AAA69959.1| 5C-DNA methyltransferase [Bacillus phage H2]
          Length = 503

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 37/130 (28%)

Query: 6   FGVPQRRERLYII-------------------DFLNP-----------SVEFKFPTPLGI 35
           F VPQ RER+YII                   D L+            S  FK+     +
Sbjct: 154 FNVPQNRERIYIIGVREDLIENDEWIVEKGRYDVLSKGKKRLKELNIKSFNFKWSAQDIV 213

Query: 36  KPRLGDILEEHIDDKSTIS----NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLS 91
             RL +ILEE++D+K  +S    +KL E  +K KE + +   G   G  + N+  T    
Sbjct: 214 GKRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEKDVVFVGGINVGKRWLNNGKT---Y 270

Query: 92  ARYYKDGSEI 101
           +R +K G+ +
Sbjct: 271 SRNFKQGNRV 280


>gi|328553026|gb|AEB23518.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
           amyloliquefaciens TA208]
          Length = 503

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 37/130 (28%)

Query: 6   FGVPQRRERLYII-------------------DFLNP-----------SVEFKFPTPLGI 35
           F VPQ RER+YII                   D L+            S  FK+     +
Sbjct: 154 FNVPQNRERIYIIGVREDLIENDEWIVEKGRNDVLSKGKKRLKELNIKSFNFKWSAQDIV 213

Query: 36  KPRLGDILEEHIDDKSTIS----NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLS 91
             RL +ILEE++D+K  +S    +KL E  +K KE + +   G   G  + N+  T    
Sbjct: 214 GKRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEKDVVFVGGINVGKRWLNNGKT---Y 270

Query: 92  ARYYKDGSEI 101
           +R +K G+ +
Sbjct: 271 SRNFKQGNRV 280


>gi|91215328|ref|ZP_01252299.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
 gi|91186280|gb|EAS72652.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
          Length = 412

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKL 57
           +KA ++ VPQ+RERL ++    +  +E+ +P+P      L D L+  E  D K  IS   
Sbjct: 221 LKAINYNVPQKRERLILVGVRKDIDLEYVYPSPYEKVYNLSDALKKGELYDSKVPISKGT 280

Query: 58  WEGHQKRKENNKIAGKGF 75
                K+K  + I  KG+
Sbjct: 281 QYPENKKKVLDLIPPKGY 298


>gi|309789605|ref|ZP_07684186.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
 gi|308228341|gb|EFO81988.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 342

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHI 47
           + A  +GVPQ RERL ++        F FP PL  K  +G+ L E +
Sbjct: 157 LNAVHYGVPQNRERLIVVGHKG---GFSFPKPLSTKVTVGEALGEMV 200


>gi|227874220|ref|ZP_03992420.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
 gi|227839928|gb|EEJ50358.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
          Length = 336

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I     L   ++++FP     KP L DIL
Sbjct: 152 LNAWDYGVAQKRERLITIGIRKDLEDKIKYEFPKVYEYKPLLKDIL 197


>gi|1171044|sp|P43420|MTB6_BACSF RecName: Full=Modification methylase Bsp6I; Short=M.Bsp6I; AltName:
           Full=Cytosine-specific methyltransferase Bsp6I
 gi|547481|emb|CAA57293.1| site-specific DNA-methyltransferase (cytosine-specific) [Bacillus
           sp.]
 gi|1098125|prf||2115268B methyltransferase Bsp6IM
          Length = 315

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDI--LEEHIDDK 50
           + A DFG +PQ RER+YI+ F N      F FP P  +   + D+  L + +DD+
Sbjct: 145 LNAKDFGNIPQNRERIYIVGFRNIEHYKNFNFPMPQPLTLTIKDMINLSDKLDDR 199


>gi|303236368|ref|ZP_07322958.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483426|gb|EFL46431.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 357

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           A D+GVPQ R+RL  +   N   +F+FP PL
Sbjct: 157 AADYGVPQIRKRLVFVGLKNNKEKFEFPEPL 187


>gi|332970702|gb|EGK09683.1| DNA (cytosine-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 197

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A +FGVPQ+RER++I+ F +    FKF  P
Sbjct: 144 LNASEFGVPQKRERVFIVGFRDDEDFFKFQFP 175


>gi|313677760|ref|YP_004055756.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944458|gb|ADR23648.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + A DF VPQ R R + +   N S+EF+FP P+    ++    EE I D
Sbjct: 152 LLASDFAVPQNRRRAFFVGLKN-SLEFEFPKPITTDNKITS--EEAISD 197


>gi|163938820|ref|YP_001643704.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163861017|gb|ABY42076.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
          Length = 350

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL 43
           + + ++G VPQ RER+YI+ FL    + +F FP P+ +   L  ++
Sbjct: 153 LNSMEYGNVPQNRERIYIVGFLENELTAKFDFPAPIPLTNTLNTVI 198


>gi|311064356|ref|YP_003971081.1| cytosine methyl transferase Dcm [Bifidobacterium bifidum PRL2010]
 gi|310866675|gb|ADP36044.1| Dcm Cytosine methyl transferase [Bifidobacterium bifidum PRL2010]
          Length = 326

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A D+GVPQ R+R+ I+   N   VEF +P P   K
Sbjct: 154 LNAADYGVPQTRQRVIIVGVRNDLDVEFTYPQPTNSK 190


>gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
 gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
          Length = 377

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFG+PQ+RER+ II    P +   +   +  K  L DILE+ ID K   S ++
Sbjct: 222 LNALDFGLPQKRERIIIIGSKKPFL-MDWTFNVEKKKTLDDILEKDIDKKHYASPEI 277


>gi|328766176|gb|EGF76234.1| hypothetical protein BATDEDRAFT_28720 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 373

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A D+GVPQ+RER++II   N    E+ FP P
Sbjct: 181 VNARDYGVPQQRERVFIIGIRNDIEFEYDFPAP 213


>gi|18700048|gb|AAL03949.1| DNA methyltransferase Bse634IM [Geobacillus stearothermophilus]
          Length = 387

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 9/42 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---------FKFPTPL 33
           + A +FG+PQ R R++II F N  +E         F++PTP+
Sbjct: 172 LNALEFGIPQDRARVFIIGFKNSIIETLQENYMDAFQWPTPI 213


>gi|169823657|ref|YP_001691160.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832277|dbj|BAG09192.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           + A +FG +PQ RER+YI+ F + +    F+FP P+ +   + D ++
Sbjct: 147 LNATEFGNIPQNRERIYIVAFRDKNCLDNFEFPKPIELTTTIRDFID 193


>gi|317483873|ref|ZP_07942812.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316924890|gb|EFV46037.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 401

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFP 30
           + A D+G+PQRRER++I+ F +   V + FP
Sbjct: 178 VNAADYGIPQRRERVFIVGFRHDLGVRWSFP 208


>gi|291618717|ref|YP_003521459.1| HsdRM [Pantoea ananatis LMG 20103]
 gi|291153747|gb|ADD78331.1| HsdRM [Pantoea ananatis LMG 20103]
          Length = 313

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTP 32
           + A D+GVPQ R+R++I+    N +VE+ FP P
Sbjct: 141 LNAMDYGVPQERKRIFIVGIKDNINVEYSFPEP 173


>gi|325979448|ref|YP_004289164.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325179376|emb|CBZ49420.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 333

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGV Q+RER+ ++   N       F++P     KP L D+L
Sbjct: 151 LNAWDFGVAQKRERMIMVGIRNDLANKTSFEYPEAHAYKPVLRDVL 196


>gi|218902126|ref|YP_002449960.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
 gi|218538919|gb|ACK91317.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
          Length = 350

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL 43
           + + ++G VPQ RER+YI+ FL    + +F FP P+ +   L  ++
Sbjct: 153 LNSMEYGNVPQNRERIYIVGFLENELTAKFDFPAPIPLTNTLNTVI 198


>gi|319639604|ref|ZP_07994351.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399175|gb|EFV79849.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 348

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-----LGIKPRLGDILEEHIDD 49
           + A D+GVPQ R+R + + F N ++ F+FP       + +K  + D+ +  +DD
Sbjct: 155 LMASDYGVPQNRKRAFFVGFKNGTI-FEFPKQTVNQYVTVKQAISDLPDYSVDD 207


>gi|113477918|ref|YP_723979.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168966|gb|ABG53506.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 337

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           +   DFGVPQ R+R+ +I       EF FP  L  K  +G+ LEE
Sbjct: 155 LNTVDFGVPQNRQRVIVIGHKG---EFTFPQVLDKKVTVGEALEE 196


>gi|237742048|ref|ZP_04572529.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429696|gb|EEO39908.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 440

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP----TPLGIKPRLGDILEEHIDDK 50
           + A ++GVPQ R RL +I F N   E K+P      + ++  L D+    +D+K
Sbjct: 189 LNASNYGVPQNRHRLILIGFRNDMKEPKYPKEFKQKVTLREALSDLTNYELDNK 242


>gi|254673505|emb|CBA08927.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
          Length = 273

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 207


>gi|304387455|ref|ZP_07369646.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338548|gb|EFM04667.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 273

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 207


>gi|261840146|gb|ACX99911.1| cytosine-specific methyltransferase [Helicobacter pylori 52]
          Length = 343

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDIL 43
           + A + GV Q+RERL+I+     LN S  F FP PL  K  L DIL
Sbjct: 151 LNASNHGVAQKRERLFIVGIRKDLNRS--FNFPKPLKNKKVLKDIL 194


>gi|321310707|ref|YP_004193036.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802551|emb|CBY93197.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 340

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + + D+GV Q+RERL +I    DF    + FK+P     KP L D+L +
Sbjct: 156 LNSWDYGVAQKRERLILIGIRSDF-REKISFKYPKKHRYKPVLSDVLND 203


>gi|281491831|ref|YP_003353811.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375542|gb|ADA65048.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 347

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT--PLGIKPRLGDI--LEEHI-DDKSTISN 55
           + A DFGVPQ+R R+  +   N   +F FP    +  +  L D+  LE+ +  ++S  SN
Sbjct: 153 LVASDFGVPQKRRRIVFVGLQNDVFDFNFPEFGMVTTEMALSDLPSLEDELGTEESEYSN 212

Query: 56  KLWEGHQK 63
           K    +QK
Sbjct: 213 KPQNSYQK 220


>gi|270293678|ref|ZP_06199880.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
 gi|270275145|gb|EFA21005.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
          Length = 361

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           A ++GVPQRR R++++   N  ++F+FP P   K      +EE I D   + N
Sbjct: 154 ADEYGVPQRRMRMFMVGN-NQGIDFEFPKPFDYKVS----VEEAIGDLPVLHN 201


>gi|149060302|gb|EDM11016.1| coproporphyrinogen oxidase [Rattus norvegicus]
          Length = 233

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 2   KACD--FGVPQRRER-----LYIIDFLNPSVE--FKFPTPLG--IKPRLGDILEEHIDDK 50
           K CD  F +  R ER     ++  D  +PS E  F+F       + P    I+++H DD 
Sbjct: 96  KWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDS 155

Query: 51  STISNKLWEGHQKRK--ENNKIAGKGFGYGLFFENSATTNTLSA 92
            T  +KLW+  ++ +  E N +  +G  +GLF   S   + L +
Sbjct: 156 YTPQDKLWQQLRRGRYVEFNLVYDRGTKFGLFTPGSRIESILMS 199


>gi|240128365|ref|ZP_04741026.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686763|ref|ZP_06153625.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627047|gb|EEZ59447.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 423

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 207


>gi|59801103|ref|YP_207815.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA 1090]
 gi|121634967|ref|YP_975212.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|194098793|ref|YP_002001855.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999085|ref|ZP_04719009.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           35/02]
 gi|240014008|ref|ZP_04720921.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           DGI18]
 gi|240016449|ref|ZP_04722989.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA6140]
 gi|240080568|ref|ZP_04725111.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA19]
 gi|240113063|ref|ZP_04727553.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           MS11]
 gi|240115818|ref|ZP_04729880.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID18]
 gi|240118116|ref|ZP_04732178.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID1]
 gi|240121574|ref|ZP_04734536.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID24-1]
 gi|240123666|ref|ZP_04736622.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID332]
 gi|240125856|ref|ZP_04738742.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493863|ref|ZP_05107034.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440365|ref|ZP_05794181.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           DGI2]
 gi|268594923|ref|ZP_06129090.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268596698|ref|ZP_06130865.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268599147|ref|ZP_06133314.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268601493|ref|ZP_06135660.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268603831|ref|ZP_06137998.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268682295|ref|ZP_06149157.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268684453|ref|ZP_06151315.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043662|ref|ZP_06569378.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|293398965|ref|ZP_06643130.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717998|gb|AAW89403.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA 1090]
 gi|120866673|emb|CAM10425.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|193934083|gb|ACF29907.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512903|gb|EEH62248.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548312|gb|EEZ43730.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268550486|gb|EEZ45505.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268583278|gb|EEZ47954.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268585624|gb|EEZ50300.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268587962|gb|EEZ52638.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268622579|gb|EEZ54979.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268624737|gb|EEZ57137.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012125|gb|EFE04114.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|291610379|gb|EFF39489.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164377|gb|ADV07918.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 423

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 207


>gi|218768275|ref|YP_002342787.1| DNA modification methylase [Neisseria meningitidis Z2491]
 gi|121052283|emb|CAM08611.1| DNA modification methylase [Neisseria meningitidis Z2491]
          Length = 423

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--SPSPKLKNILESGLPTESS 207


>gi|126658057|ref|ZP_01729209.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
 gi|126620695|gb|EAZ91412.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
          Length = 358

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A  F +PQ RER+YI+    D+L   VEF FP        +   +E +++  S IS  
Sbjct: 181 LDAALFNLPQVRERIYIVGFCRDYLKERVEFNFPVGRKNNVFIDQFIETNVEGYS-ISKH 239

Query: 57  LWEGHQKRKENNK 69
           L + +  +K++ +
Sbjct: 240 LQKTYLFKKDDGR 252


>gi|314055098|ref|YP_004063436.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
 gi|313574989|emb|CBI70002.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
          Length = 315

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 8   VPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           VPQ RER+YI+ F +  +   F F    G K  L D +E  + DK   S+K
Sbjct: 153 VPQHRERIYIVGFRDKELHDNFNFDFVEGDKGNLCDFMESCVPDKYYYSDK 203


>gi|79749365|ref|NP_001032172.1| coproporphyrinogen-III oxidase, mitochondrial precursor [Rattus
           norvegicus]
 gi|123780327|sp|Q3B7D0|HEM6_RAT RecName: Full=Coproporphyrinogen-III oxidase, mitochondrial;
           Short=COX; Short=Coprogen oxidase;
           Short=Coproporphyrinogenase; Flags: Precursor
 gi|78070754|gb|AAI07665.1| Coproporphyrinogen oxidase [Rattus norvegicus]
          Length = 443

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 2   KACD--FGVPQRRER-----LYIIDFLNPSVE--FKFPTPLG--IKPRLGDILEEHIDDK 50
           K CD  F +  R ER     ++  D  +PS E  F+F       + P    I+++H DD 
Sbjct: 306 KWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDS 365

Query: 51  STISNKLWEGHQKRK--ENNKIAGKGFGYGLFFENSATTNTL 90
            T  +KLW+  ++ +  E N +  +G  +GLF   S   + L
Sbjct: 366 YTPQDKLWQQLRRGRYVEFNLVYDRGTKFGLFTPGSRIESIL 407


>gi|326567346|gb|EGE17461.1| type II DNA modification enzyme [Moraxella catarrhalis BC1]
          Length = 327

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 6   FGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           +GVPQ R+R+Y +        + FKFP P+  KP + D L +  D +  ++N  ++ +  
Sbjct: 149 YGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTFQKYLA 207

Query: 64  RKEN 67
            K N
Sbjct: 208 SKYN 211


>gi|297621903|ref|YP_003710040.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
 gi|297377204|gb|ADI39034.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
          Length = 410

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEE 45
           +K+  + VPQ+RERL+I+   N  V   +FK+P+P      L D L++
Sbjct: 220 LKSIFYQVPQKRERLFIVGVRNDLVKKAKFKWPSPFKKVLTLKDALKQ 267


>gi|326560963|gb|EGE11328.1| type II DNA modification enzyme [Moraxella catarrhalis 7169]
 gi|326575187|gb|EGE25115.1| type II DNA modification enzyme [Moraxella catarrhalis CO72]
          Length = 322

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 6   FGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           +GVPQ R+R+Y +        + FKFP P+  KP + D L +  D +  ++N  ++ +  
Sbjct: 144 YGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTFQKYLA 202

Query: 64  RKEN 67
            K N
Sbjct: 203 SKYN 206


>gi|261400634|ref|ZP_05986759.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|313668389|ref|YP_004048673.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|1709164|sp|P50182|MTN4_NEILA RecName: Full=Modification methylase NlaIV; Short=M.NlaIV; AltName:
           Full=Cytosine-specific methyltransferase NlaIV
 gi|476227|gb|AAA53237.1| M.NlaIV [Neisseria lactamica]
 gi|269209540|gb|EEZ75995.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|313005851|emb|CBN87307.1| DNA modification methylase [Neisseria lactamica 020-06]
          Length = 423

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTPS--PKLKNILESGLPTESS 207


>gi|268610192|ref|ZP_06143919.1| cytosine-specific DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 475

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 31/123 (25%)

Query: 1   MKACDFGVPQRRERLYII----DFLNPSV---EFKFPTPLGI-----KPRLGD---ILEE 45
           +   DFG+PQ RER+YI+    D  N  +    F     L +     K ++GD   ILE+
Sbjct: 204 LSPSDFGIPQIRERVYILGIRRDIRNQQILTNGFIHIEDLQLDKHFKKCKMGDAWSILED 263

Query: 46  HIDDKSTISNK------LWEGHQKRKENNKIAG-----KGFGYGLFFENSATTNTLSARY 94
            +DD   IS +       WE  +K   N K+ G       FG G    N  T +  S++ 
Sbjct: 264 EVDDSYIISEEKEQMILAWEEFRK-ATNIKVIGFPIWIDSFGVG----NDDTDDVYSSQG 318

Query: 95  YKD 97
           Y D
Sbjct: 319 YDD 321


>gi|326563801|gb|EGE14052.1| type II DNA modification enzyme [Moraxella catarrhalis 46P47B1]
 gi|326566814|gb|EGE16953.1| type II DNA modification enzyme [Moraxella catarrhalis 103P14B1]
 gi|326576727|gb|EGE26634.1| type II DNA modification enzyme [Moraxella catarrhalis 101P30B1]
          Length = 327

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 6   FGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           +GVPQ R+R+Y +        + FKFP P+  KP + D L +  D +  ++N  ++ +  
Sbjct: 149 YGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTFQKYLA 207

Query: 64  RKEN 67
            K N
Sbjct: 208 SKYN 211


>gi|309378580|emb|CBX22758.1| DNA cytosine methyltransferase M.NlaIV [Neisseria lactamica
           Y92-1009]
          Length = 380

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +  +S+
Sbjct: 115 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFET--TPSPKLKNILESGLPTESS 164


>gi|317181803|dbj|BAJ59587.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 351

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL----GIKPRLGDI 42
           + A D+GVPQ RER+ ++  L     +F FP P+     +K  LGD+
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFHFPKPIKTHFSLKDALGDL 191


Searching..................................................done


Results from round 2




>gi|78777762|ref|YP_394077.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498302|gb|ABB44842.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 328

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 78/101 (77%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ RER+YI+ FL+  VEF+FP P+    ++GDILE+ +D+K TIS+KLW G
Sbjct: 163 LNAKDYGVPQNRERIYIVGFLDNEVEFEFPKPIEKYVKVGDILEDKVDEKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  +K  G GFGY +F ENS  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKIEHKAKGNGFGYSMFNENSIYTSTISARYYKDGSEI 263


>gi|313667524|ref|YP_004047808.1| cytosine-specific methyltransferase [Neisseria lactamica ST-640]
 gi|309378245|emb|CBX23130.1| DNA cytosine methyltransferase M.NlaX [Neisseria lactamica
           Y92-1009]
 gi|313004986|emb|CBN86414.1| cytosine-specific methyltransferase [Neisseria lactamica 020-06]
          Length = 313

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 HQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|127471|sp|P24581|MTNX_NEILA RecName: Full=Cytosine-specific methyltransferase NlaX;
           Short=M.NlaX
 gi|45004|emb|CAA38357.1| cytosine-specific methyltransferase of NlaIII [Neisseria lactamica]
          Length = 313

 Score =  187 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +Q+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 YQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|315637499|ref|ZP_07892709.1| modification methylase EcoRII [Arcobacter butzleri JV22]
 gi|315478217|gb|EFU68940.1| modification methylase EcoRII [Arcobacter butzleri JV22]
          Length = 326

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ RER+YII FL+ S++FK+P PL  K RLGDIL++++DDK TIS+KLW G
Sbjct: 163 LNAKDFGVPQNRERIYIIAFLDHSIDFKYPKPLNKKNRLGDILDDNVDDKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK+ +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKKEHKEKGNGFGYSLFTHNSEYTSTISARYYKDGSEI 263


>gi|261400948|ref|ZP_05987073.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209191|gb|EEZ75646.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 313

 Score =  187 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFG+PQ RER+Y++ FLN  V+F+FP P+G    +GDILE + D+K TIS+KLW+G
Sbjct: 145 LKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQG 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +Q+RK  N+ AGKGFGYGLF   SA TNT+SARYYKDGSEI
Sbjct: 205 YQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEI 245


>gi|150026187|ref|YP_001297013.1| type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772728|emb|CAL44211.1| Probable type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 335

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 83/101 (82%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA +FG+PQ RER+YI+ FL+ S++FKFPTP  +  ++GDILE+ +D+K TIS++LWEG
Sbjct: 152 LKAKEFGLPQNRERIYIVGFLDNSIKFKFPTPTKLPTKVGDILEQKVDEKYTISDRLWEG 211

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  NK  GKGFG+G+  ENS  TNT+SARYYKDGSEI
Sbjct: 212 HQRRKIANKEKGKGFGFGIVNENSEYTNTISARYYKDGSEI 252


>gi|319407456|emb|CBI81106.1| Cytosine-specific methyltransferase NlaX [Bartonella sp. 1-1C]
          Length = 307

 Score =  183 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/101 (67%), Positives = 80/101 (79%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +KA DFGVPQ RER+YI+ FL+ S  FKFP+P+ IK R+GDIL+  +D+K TISN LW G
Sbjct: 147 LKARDFGVPQNRERIYIVGFLDHSTNFKFPSPMNIKTRVGDILDNDVDEKYTISNTLWHG 206

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK  NK+ GKGFGYGLF   S  TNTLSARYYKDGSEI
Sbjct: 207 HQRRKAQNKLNGKGFGYGLFNMESPYTNTLSARYYKDGSEI 247


>gi|119026301|ref|YP_910146.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765885|dbj|BAF40064.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 383

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A DFGVPQ RER+YI+ F    V    +FK+P P  I  RLGDILE+++DDK TIS+ 
Sbjct: 214 LAAKDFGVPQNRERIYIVGFDKEQVPNWADFKYPEPPCIPTRLGDILEKNVDDKYTISDA 273

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GHQ+RK+ NK AGKGFGYGLF E+S   NT+SARYYKDGSEI
Sbjct: 274 LWAGHQRRKQENKKAGKGFGYGLFDEDSPYANTISARYYKDGSEI 318


>gi|50914506|ref|YP_060478.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|40218542|gb|AAR83196.1| type II modification methylase [Streptococcus pyogenes]
 gi|50261587|gb|AAT72355.1| methylase [Streptococcus pyogenes]
 gi|50903580|gb|AAT87295.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|114386439|gb|ABI74454.1| DNA methyltransferase [Streptococcus pyogenes]
          Length = 408

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 4/104 (3%)

Query: 2   KACDFGVPQRRERLYIIDFL----NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           KA DFGVPQ RER+YI+ F     N   EF+FP P  ++ +LG+IL+  +D+K TIS+KL
Sbjct: 243 KARDFGVPQNRERIYIVGFDKTCVNNFSEFRFPEPFHLETKLGNILQTDVDEKYTISDKL 302

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           WEGHQ+RK  +K  G GFGY LF  +S  TNTLSARYYKDGSEI
Sbjct: 303 WEGHQRRKAEHKTKGNGFGYSLFNADSPYTNTLSARYYKDGSEI 346


>gi|224418923|ref|ZP_03656929.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253827874|ref|ZP_04870759.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313142438|ref|ZP_07804631.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253511280|gb|EES89939.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313131469|gb|EFR49086.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 328

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 73/101 (72%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ RER+ I+ F + +V F FP P     +LGDILE+  D+K TISN+LWE 
Sbjct: 164 LNARDYGVPQNRERIIIVGFKDHNVHFDFPKPYNYSVKLGDILEKTPDEKYTISNRLWES 223

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RKE  K  G GFGY LF ENS  T+T+SARYYKDGSEI
Sbjct: 224 HQQRKELQKAKGNGFGYRLFDENSPYTSTISARYYKDGSEI 264


>gi|283471715|emb|CAQ50926.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 397

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFG PQ RER+YI+ F    +     F FP PL I+  LG ILE +++DK TIS++
Sbjct: 227 LRARDFGCPQNRERIYIVGFDKQQIKNAENFSFPEPLPIETSLGSILESNVNDKYTISDR 286

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GHQ+RK  +K  G GFGY +F E S  TNTLSARYYKDGSEI
Sbjct: 287 LWYGHQRRKREHKAKGNGFGYSIFNETSPYTNTLSARYYKDGSEI 331


>gi|157737722|ref|YP_001490405.1| DNA (cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|157699576|gb|ABV67736.1| DNA (Cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 326

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/101 (61%), Positives = 78/101 (77%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FGVPQ RER+YII FL+ S++FK+P  L  K RLGDIL+ ++DDK TIS+KLW G
Sbjct: 163 LNARNFGVPQNRERIYIIAFLDHSIDFKYPKSLNKKNRLGDILDNNVDDKYTISDKLWAG 222

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQ+RK+ +K  G GFGY LF   S  T+T+SARYYKDGSEI
Sbjct: 223 HQRRKKEHKEKGNGFGYSLFTHESEYTSTISARYYKDGSEI 263


>gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 379

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae]
          Length = 379

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName:
           Full=Cytosine-specific methyltransferase SsoII
 gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4]
          Length = 379

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 275 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 317


>gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254547855|gb|ACT56990.2| DNA-methyltransferase MKpn2kI [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 101

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG
Sbjct: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI
Sbjct: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101


>gi|255066464|ref|ZP_05318319.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298369378|ref|ZP_06980696.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|255049344|gb|EET44808.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298283381|gb|EFI24868.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 357

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFL--NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           M A DF +PQ RER+YI+ F     + +F+FP PL    ++GDILE   D K TIS++LW
Sbjct: 190 MAAKDFNLPQNRERIYIVGFRSAKDAAQFEFPHPLPKTVKVGDILESFPDAKYTISDRLW 249

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +GH +RK  +K  G GFGYGLF   S  TNT+SARYYKDGSEI
Sbjct: 250 QGHLRRKAEHKQKGNGFGYGLFNAQSEYTNTISARYYKDGSEI 292


>gi|323968851|gb|EGB64187.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 282

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+ LW
Sbjct: 118 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 177

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            GHQ+RK  N  AGKGFGYGLF ENS  TNT+SARYYKDGSEI
Sbjct: 178 NGHQRRKLVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEI 220


>gi|256760956|ref|ZP_05501536.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
 gi|256682207|gb|EEU21902.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
          Length = 405

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 4/104 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           KA DFG PQ RER+YI+ F   S++    F+FPT    K  +GDILE+ +D+K TIS+ L
Sbjct: 237 KARDFGAPQNRERIYIVGFDKLSLKNIDLFEFPTAPKPKTCVGDILEDSVDEKYTISDTL 296

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           WEGH++RK  +K  G GFG+ LF  +S  TNT+SARYYKDGSEI
Sbjct: 297 WEGHKRRKLEHKEKGNGFGFSLFNSSSPYTNTISARYYKDGSEI 340


>gi|299536257|ref|ZP_07049570.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
 gi|298728243|gb|EFI68805.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
          Length = 403

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS----VEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFGVPQ RER++++ F        V FKFP PL     LGDIL + +D+K TIS+K
Sbjct: 212 LRAADFGVPQNRERVFMVGFNKRIGGELVPFKFPKPLSTPTNLGDILFKKVDEKYTISDK 271

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           L+EGH +RKE +K  G GFG+ LF ENS+ TNTLSARYYKDGSEI
Sbjct: 272 LYEGHLRRKEMHKQKGNGFGFSLFDENSSYTNTLSARYYKDGSEI 316


>gi|1709152|sp|P50185|MTD5_DACSA RecName: Full=Modification methylase DsaV; Short=M.DsaV; AltName:
           Full=Cytosine-specific methyltransferase DsaV
 gi|505694|gb|AAA86046.1| DsaV methyltransferase [Dactylococcopsis salina]
          Length = 351

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/104 (46%), Positives = 76/104 (73%), Gaps = 3/104 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DF +PQ+RER++I+ F + + +   F FP P+ +  ++GD+LE+ +D+K TI++++
Sbjct: 146 ISATDFNLPQKRERIFIVGFQDKNNKNLIFDFPKPIELTAKVGDLLEKEVDEKYTITDRM 205

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           WEGHQ RK+ ++  G GFG+ L   NS+ T T+SARYYKDGSE+
Sbjct: 206 WEGHQNRKKAHRKRGNGFGFSLVNRNSSYTRTISARYYKDGSEV 249


>gi|462657|sp|P34877|MTSA_LACLC RecName: Full=Modification methylase ScrFIA; Short=M.ScrFI-A;
           Short=M.ScrFIA; AltName: Full=Cytosine-specific
           methyltransferase ScrFIA
 gi|149493|gb|AAA25220.1| SCRFI methylase [Lactococcus lactis]
 gi|2327034|gb|AAB66696.1| 5-methyl-cytosine methyltransferase [Lactococcus lactis subsp.
           cremoris]
          Length = 389

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/104 (62%), Positives = 79/104 (75%), Gaps = 4/104 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           KA DFG+PQ RER+YI+ F   S+    +F+ PTPL  K R+G+ILE  +DDK TIS+KL
Sbjct: 221 KARDFGLPQNRERIYIVGFDRKSISNYSDFQMPTPLQEKTRVGNILESVVDDKYTISDKL 280

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W+GHQ+RK  NK  GKGFGY LF ++S  TNTLSARYYKDGSEI
Sbjct: 281 WDGHQRRKTENKKNGKGFGYTLFNQDSEYTNTLSARYYKDGSEI 324


>gi|319893523|ref|YP_004150398.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163219|gb|ADV06762.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +KA DFGVPQ RER+YI+ F    +    ++  P P   +  LG ILE+++D+K TIS+K
Sbjct: 227 LKAKDFGVPQNRERIYIVGFDKRRIKKWRDYIPPKPPKSQTLLGKILEKNVDEKYTISDK 286

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW GH++RK  +K+ G GFG+ L+   S  TNTLSARYYKDGSEI
Sbjct: 287 LWSGHKRRKAEHKLKGNGFGFTLYNGESPYTNTLSARYYKDGSEI 331


>gi|321310755|ref|YP_004193084.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802599|emb|CBY93245.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 362

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 71/105 (67%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           ++A DFGVPQ RER+YI+ F   +V     FKFP        LGDILE  +DDK TISN 
Sbjct: 196 LRARDFGVPQNRERIYIVGFDKDAVQGYRNFKFPEATHKNTCLGDILESEVDDKYTISNT 255

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RK  NK  GKGFGY LF   S   NTLSARYYKDGSE+
Sbjct: 256 LWEGHKRRKVENKKKGKGFGYSLFNFESPYANTLSARYYKDGSEV 300


>gi|325989685|ref|YP_004249384.1| cytosine-specific methyltransferase [Mycoplasma suis KI3806]
 gi|323574770|emb|CBZ40430.1| Cytosine-specific methyltransferase [Mycoplasma suis]
          Length = 326

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +K+ DFG+PQ RER+YI+ F    VE    F  P+P      +GDILE+ +++K TIS+ 
Sbjct: 160 LKSRDFGIPQNRERIYIVGFNKDLVESYENFSMPSPTLKATCVGDILEKEVNNKYTISDL 219

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RKE +K+ G+GFG+ LF ENS+ TNT+SARYYKDGSEI
Sbjct: 220 LWEGHKRRKEEHKLKGRGFGFSLFSENSSYTNTISARYYKDGSEI 264


>gi|325973250|ref|YP_004250314.1| cytosine-specific DNA modification methylase, HpaII-like protein
           [Mycoplasma suis str. Illinois]
 gi|323651852|gb|ADX97934.1| cytosine-specific DNA modification methylase, HpaII-like protein
           [Mycoplasma suis str. Illinois]
          Length = 326

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 4/105 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +K+ DFG+PQ RER+YI+ F    VE    F  P+P      +GDILE+ +++K TIS+ 
Sbjct: 160 LKSRDFGIPQNRERIYIVGFNKDLVESYENFSMPSPTLKATCVGDILEKEVNNKYTISDL 219

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LWEGH++RKE +K+ G+GFG+ LF ENS+ TNT+SARYYKDGSEI
Sbjct: 220 LWEGHKRRKEEHKLKGRGFGFSLFSENSSYTNTISARYYKDGSEI 264


>gi|262402975|ref|ZP_06079535.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
 gi|262350474|gb|EEY99607.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
          Length = 410

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 72/118 (61%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFL-------NPSVEFKFPTPLGIKPRLGDILEEH------- 46
           ++A DFGVPQ RER++I+ F        N    F +P       R+GDILE         
Sbjct: 216 LRAADFGVPQNRERIFIVGFDKNYFRGVNFDSLFSWPEAPKTPTRVGDILEPQHVLDEEK 275

Query: 47  ---IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                D+ TIS+KLW+GH+KRKE +KI G GFGY LF  +S  TNT+SARYYKDGSEI
Sbjct: 276 QALGKDRYTISDKLWDGHKKRKEEHKIKGNGFGYSLFNADSEYTNTISARYYKDGSEI 333


>gi|315931535|gb|EFV10502.1| DNA (cytosine-5) methyltransferase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 284

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKF--PTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FG+PQ RER+YI+ FL     ++ F F     + IK +LGDILE+++D+K TIS+
Sbjct: 151 LNARNFGIPQNRERIYIVAFLKNKFKNISFNFNELKNIEIKSKLGDILEKNVDEKYTISD 210

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 211 KLWAGHQRRKLEHKKKGNGFGYSLFNHNSDYTSTISARYYKDGSEI 256


>gi|157414453|ref|YP_001481709.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283955585|ref|ZP_06373079.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|157385417|gb|ABV51732.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283792928|gb|EFC31703.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 321

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKF--PTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FG+PQ RER+YI+ FL     ++ F F     + IK +LGDILE+++D+K TIS+
Sbjct: 151 LNARNFGIPQNRERIYIVAFLKNKFKNISFNFNELKNIEIKSKLGDILEKNVDEKYTISD 210

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +K  G GFGY LF  NS  T+T+SARYYKDGSEI
Sbjct: 211 KLWAGHQRRKLEHKKKGNGFGYSLFNHNSDYTSTISARYYKDGSEI 256


>gi|15677157|ref|NP_274310.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|161870164|ref|YP_001599334.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis 053442]
 gi|218768314|ref|YP_002342826.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|7226530|gb|AAF41666.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|121052322|emb|CAM08652.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|161595717|gb|ABX73377.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis 053442]
 gi|254670478|emb|CBA06174.1| putative DNA modification methylase [Neisseria meningitidis
           alpha153]
 gi|308389411|gb|ADO31731.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
           alpha710]
 gi|316984080|gb|EFV63058.1| modification methylase SsoII [Neisseria meningitidis H44/76]
 gi|319410559|emb|CBY90927.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134466|gb|EGC57111.1| modification methylase EcoRII [Neisseria meningitidis M13399]
 gi|325136204|gb|EGC58812.1| modification methylase EcoRII [Neisseria meningitidis M0579]
 gi|325140483|gb|EGC63004.1| modification methylase EcoRII [Neisseria meningitidis CU385]
 gi|325144567|gb|EGC66866.1| modification methylase EcoRII [Neisseria meningitidis M01-240013]
 gi|325200082|gb|ADY95537.1| modification methylase EcoRII [Neisseria meningitidis H44/76]
 gi|325201996|gb|ADY97450.1| modification methylase EcoRII [Neisseria meningitidis M01-240149]
 gi|325205934|gb|ADZ01387.1| modification methylase EcoRII [Neisseria meningitidis M04-240196]
 gi|325208252|gb|ADZ03704.1| modification methylase EcoRII [Neisseria meningitidis NZ-05/33]
          Length = 337

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M A  + VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ 
Sbjct: 171 MNAKYY-VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDN 229

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW   Q   + +K  G GFG+GL       + TLSARYYKDGSEI
Sbjct: 230 LWLYLQNYAKKHKAKGNGFGFGLVD-LDGISRTLSARYYKDGSEI 273


>gi|325130344|gb|EGC53110.1| modification methylase EcoRII [Neisseria meningitidis OX99.30304]
          Length = 337

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M A  + VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ 
Sbjct: 171 MNAKYY-VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDN 229

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW   Q   + +K  G GFG+GL       + TLSARYYKDGSEI
Sbjct: 230 LWLYLQNYAKKHKAKGNGFGFGLVD-LDGISRTLSARYYKDGSEI 273


>gi|304387412|ref|ZP_07369603.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
 gi|304338505|gb|EFM04624.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
          Length = 336

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M A  + VPQ RER++I+ F     N  + F FP+P   +P+L  ILE+ +D+  T+S+ 
Sbjct: 171 MNAKYY-VPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILEDDVDNSFTLSDN 229

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           LW   Q   + +K  G GFG+GL       + TLSARYYKDGSEI
Sbjct: 230 LWLYLQNYAKKHKAKGNGFGFGLVD-LDGISRTLSARYYKDGSEI 273


>gi|260554958|ref|ZP_05827179.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
 gi|260411500|gb|EEX04797.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
          Length = 413

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 74/114 (64%), Gaps = 13/114 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFL--------NPSVEFKFPTPLGIKPRLGDILEE-----HI 47
           ++A DFGVPQ RER++++ F         N    F +P P   + RLGDILE+       
Sbjct: 222 LRAADFGVPQNRERIFLVGFDKNYFGEECNFDQLFSWPVPPKKQTRLGDILEDVSKLKKS 281

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +D  TIS++LW+GHQ+RKE + I G GFGY L+  +S  TNTLSARYYKDGSEI
Sbjct: 282 EDVYTISDRLWQGHQRRKEEHGIKGNGFGYTLYTGDSPYTNTLSARYYKDGSEI 335


>gi|294788070|ref|ZP_06753314.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
 gi|294484363|gb|EFG32046.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 5/106 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----SVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A +FGVPQ RER+YI+   N      +++F       +  ++GDIL+  +D+K TIS+
Sbjct: 184 LNAKNFGVPQNRERIYIVAIRNDFNPTFNLDFDKLKNTKVNCQVGDILQNQVDEKYTISD 243

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW GHQ+RK  +   G GFGY LF   S  T+T+SARYYKDGSEI
Sbjct: 244 KLWAGHQRRKAEHIEKGNGFGYSLFNAQSPYTSTISARYYKDGSEI 289


>gi|323495143|ref|ZP_08100228.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
 gi|323310583|gb|EGA63762.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
          Length = 443

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/118 (47%), Positives = 70/118 (59%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-------SVEFKFPTPLGIKPRLGDILEEHID----- 48
           ++A DFGVPQ RER++II F             F +P P     ++GDIL+   +     
Sbjct: 248 LRAADFGVPQNRERIFIIGFDKDYYTGVDFDQVFNWPEPPKTPTKVGDILQSDQELEAEA 307

Query: 49  -----DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                D  TIS++LWEGHQKRKE +K  G GFGY L+   S  TNT+SARYYKDGSEI
Sbjct: 308 KVIGKDCYTISDRLWEGHQKRKEGHKTKGNGFGYTLYNAESEYTNTISARYYKDGSEI 365


>gi|152998369|ref|YP_001343204.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
 gi|150839293|gb|ABR73269.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
          Length = 417

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +K+ DFGVPQ R+R+YI+ + +  ++ F +P  +G+  R+GDILE + + K TIS++LWE
Sbjct: 255 LKSVDFGVPQNRQRIYIVLWKDGEIDKFDYPESMGLDTRVGDILEANPNPKLTISDRLWE 314

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           GHQ+RK  NKI GKGFGYG+  E+S  TNT+SARYYKDGSE+
Sbjct: 315 GHQRRKMQNKINGKGFGYGIVTEDSPYTNTISARYYKDGSEV 356


>gi|170729237|ref|YP_001763263.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169814584|gb|ACA89168.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 416

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           M++ DFGVPQ R+R+YII + +  +E F++P P G   ++ DILE    +K TIS+KLW 
Sbjct: 255 MRSVDFGVPQNRQRIYIILWKDGLIEQFQYPKPSGKDTKVADILESEPCEKLTISDKLWA 314

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           GH++RK  NK  GKGFGYGL    S  TNT+SARYYKDGSEI
Sbjct: 315 GHKRRKIENKAKGKGFGYGLVSPESEYTNTISARYYKDGSEI 356


>gi|166368844|ref|YP_001661117.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
 gi|166091217|dbj|BAG05925.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
          Length = 338

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           VPQ R+R++I+ F  PS  F FP    I P++ DILE  +D K T+++ LW+  QK  + 
Sbjct: 158 VPQNRKRIFIVGFEKPS-RFMFPEIPDIHPKIKDILEGEVDSKYTLTDHLWDYLQKYADK 216

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +K  G GFGYGL         TLSARYYKDGSEI
Sbjct: 217 HKEKGNGFGYGLVNLE-GIARTLSARYYKDGSEI 249


>gi|124024750|ref|YP_001013866.1| site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
 gi|123959818|gb|ABM74601.1| Site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
          Length = 305

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 76/101 (75%), Gaps = 1/101 (0%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ RER++I  +++  + F+FP P  ++ ++GDIL++++ DK T+S+K+W  
Sbjct: 146 LNAKDFGVPQNRERIFIFGYID-FIFFEFPEPSKVQTKVGDILDDNVPDKFTLSDKMWTN 204

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             +RKENN+  G GFG+ LF ++S  T+T+SARYYKDGSEI
Sbjct: 205 AIRRKENNRKRGYGFGFSLFDKDSEYTSTISARYYKDGSEI 245


>gi|296103580|ref|YP_003613726.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058039|gb|ADF62777.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 471

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 6   FGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNKLW 58
           + +PQ RER+ ++ F    N   +F       +    +P + D+LE  +D K  ++  LW
Sbjct: 269 YFLPQHRERIVLVGFRRDLNLKGDFTLRDIPSLYPARRPSVADLLEPAVDAKFILTPVLW 328

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           +   +  + ++  G GFG+GL   N     T TLSARYYKDG+EI
Sbjct: 329 KYLYRYAKKHQAKGNGFGFGLVNPNDPHCVTRTLSARYYKDGAEI 373


>gi|229530048|ref|ZP_04419438.1| type II restriction-modification system methylation subunit [Vibrio
           cholerae 12129(1)]
 gi|229333822|gb|EEN99308.1| type II restriction-modification system methylation subunit [Vibrio
           cholerae 12129(1)]
          Length = 270

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/118 (48%), Positives = 69/118 (58%), Gaps = 17/118 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-------FKFPTPLGIKPRLGDILEE-------- 45
           ++A DFG PQ RER++II F             F +P       R+GDIL+         
Sbjct: 76  LRAADFGSPQNRERIFIIGFNKDEFPNIDFDKLFSWPKAPKTPTRVGDILQTQQELELDK 135

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             H  D+ TIS+KLWEGHQKRK  +K  G GFGY LF  +S  TNT+SARYYKDGSEI
Sbjct: 136 KLHGKDRFTISDKLWEGHQKRKAEHKTKGNGFGYSLFNADSEYTNTISARYYKDGSEI 193


>gi|37524351|ref|NP_927695.1| DNA cytosine methylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783775|emb|CAE12633.1| DNA-cytosine methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 478

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 6   FGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLW 58
           + +PQ RER+ ++ F    N    F            +P L D+LE  +D K  ++  LW
Sbjct: 279 YFLPQHRERIVLVGFRKDLNIHQGFTLRDISRYFPKERPTLADLLEPEVDSKYILTPNLW 338

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           +        ++  G GFG+GL   N   + T TLSARY+KDGSEI
Sbjct: 339 KYLYNYARKHQAKGNGFGFGLIDPNNKDSVTRTLSARYHKDGSEI 383


>gi|17863973|gb|AAL46998.1|AF448250_2 putative C-5 cytosine-specific DNA methylase [Bacteroides coprosuis
           DSM 18011]
          Length = 401

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 67/110 (60%), Gaps = 10/110 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--------FKFPTPLGIKPRLGDILEEHI--DDK 50
           + A DFG PQ RER+YI+ F              F+FP P   K  + D+LE+    D  
Sbjct: 237 LNAKDFGSPQNRERIYIVGFNKNHFTKIDDFNEIFQFPEPSKEKVSVKDVLEKIPANDTI 296

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            TIS ++W+GHQKRK  ++  G GFG+ LF ENS  TNT+SARYYKDGSE
Sbjct: 297 YTISERIWQGHQKRKLKHQNKGNGFGFSLFNENSEYTNTISARYYKDGSE 346


>gi|317497297|ref|ZP_07955620.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895366|gb|EFV17525.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 385

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 6/106 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----SVEFKFPT-PLGIKPRLGDILEEHIDDKSTIS 54
           + A  FG+PQ RER+ I+ F          +FK+P   +  K  +GDILE+ + ++ TIS
Sbjct: 213 LNAYHFGIPQNRERIIIVGFNKDYLPKKFKDFKYPVGKIDKKVCVGDILEKEVGERFTIS 272

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           +KLWEGHQ RK  +K  G GFG+ LF ++S  T+T+SARYYKDGSE
Sbjct: 273 DKLWEGHQARKRMHKKKGNGFGFCLFNKDSKYTSTISARYYKDGSE 318


>gi|238922589|ref|YP_002936102.1| modification methylase [Eubacterium rectale ATCC 33656]
 gi|238874261|gb|ACR73968.1| modification methylase [Eubacterium rectale ATCC 33656]
          Length = 392

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISN 55
           +   +F VPQ RER+ I+ F        +EF F  TP+  KP + DILE+ +DDK T+S+
Sbjct: 214 LDGQNF-VPQHRERIIIVGFDMERYGDDIEFDFDITPVNPKPVMRDILEKKVDDKYTLSD 272

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            LW   Q     ++ AG GFGYG+       + T+SARY+KDGSEI
Sbjct: 273 NLWTYLQNYAAKHRAAGNGFGYGI-APLDGVSRTISARYHKDGSEI 317


>gi|237713924|ref|ZP_04544405.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262409168|ref|ZP_06085712.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
 gi|229446080|gb|EEO51871.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262352915|gb|EEZ02011.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
          Length = 361

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F          F FP        + +ILE  IDDK T+S+KLW   Q 
Sbjct: 186 VPQHRERIMIVGFNREIFHGEEQFCFPEQKQSTRGIREILESDIDDKYTLSDKLWSYLQN 245

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 246 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 282


>gi|294646710|ref|ZP_06724334.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294807186|ref|ZP_06766001.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|292637950|gb|EFF56344.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294445609|gb|EFG14261.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 445

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F          F FP        + +ILE  IDDK T+S+KLW   Q 
Sbjct: 270 VPQHRERIMIVGFNREIFHGEEQFCFPEQKQSTRGIREILESDIDDKYTLSDKLWSYLQN 329

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 330 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 366


>gi|312898460|ref|ZP_07757850.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
 gi|310620379|gb|EFQ03949.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
          Length = 400

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 8   VPQRRERLYIIDFLN----PSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           VPQ RER+ I+ F        + F+F   P+  KP +  ILE  +DDK T+++KLW   Q
Sbjct: 208 VPQHRERILIVGFDRKRYGRDIGFRFSIAPVNPKPAIKAILETKVDDKYTLTDKLWTYLQ 267

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                ++ AG GFGYG+   N   + TLSARYYKDGSEI
Sbjct: 268 NYAAKHRAAGNGFGYGIADPN-GVSRTLSARYYKDGSEI 305


>gi|313158099|gb|EFR57504.1| putative DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 431

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 6   FGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           + VPQ RER+ I+ F N        FKFP    +  ++ +ILE  +D K T+++KLW   
Sbjct: 265 YFVPQHRERIMIVGFRNNLFHGVEKFKFPELKDVSHKIRNILEPEVDPKYTLTDKLWVYL 324

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q   + ++ +G GFG+GL         TLSARYYKDGSEI
Sbjct: 325 QNYAKKHQDSGNGFGFGLVD-LDGIARTLSARYYKDGSEI 363


>gi|238783073|ref|ZP_04627100.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
 gi|238716074|gb|EEQ08059.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
          Length = 475

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N   +F            +P  G++LE  +DDK  ++  
Sbjct: 278 KNF-LPQHRERIVLVGFRKDLNIDKDFTLKDIHKFFPEKRPTFGELLEPVVDDKYILTPH 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LW+      + ++  G GFG+GL     + +   TLSARY+KDGSEI
Sbjct: 337 LWKYLYNYAKKHQAKGNGFGFGLVDPTNSDSVARTLSARYHKDGSEI 383


>gi|261340425|ref|ZP_05968283.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317516|gb|EFC56454.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 477

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F       +    +P + D+LE  +D K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLMGDFTLRNLPALYPARRPTIADLLEPAVDAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFG+G+   N     T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQAKGNGFGFGMVNPNDPHSVTRTLSARYYKDGAEI 379


>gi|295098276|emb|CBK87366.1| DNA-methyltransferase (dcm) [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 477

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F       +    +P + D+LE  +D K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKGDFTLRDLPSLYPARRPTVADLLEPAVDAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFG+G+       + T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQAKGNGFGFGMVNPLNPDSVTRTLSARYYKDGAEI 379


>gi|308126237|ref|ZP_05908633.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107574|gb|EFO45114.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 426

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 8/108 (7%)

Query: 1   MKACDFGVPQRRERLYIIDF-------LNPSVEFKFPTPLGIKPRLGDILE-EHIDDKST 52
           ++A DFG PQ RER+Y++ F       L+ +  F+FP P     ++GDILE     D  T
Sbjct: 248 LRAADFGAPQNRERIYLVGFDKDYFGDLDFNSIFQFPEPTMKPTKVGDILETSDYVDSFT 307

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           IS+K+W  HQKRK  +K  G GFG+ L    +  TNT+SARYYKDGSE
Sbjct: 308 ISDKIWASHQKRKAGHKNKGNGFGFTLVNSETKYTNTISARYYKDGSE 355


>gi|133756232|ref|YP_001096382.1| DNA cytosine methylase [Escherichia coli]
 gi|110084067|gb|ABG49221.1| hypothetical protein [Escherichia coli]
          Length = 566

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 367 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 425

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 426 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 472


>gi|53714966|ref|YP_100958.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
 gi|52217831|dbj|BAD50424.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
          Length = 431

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 8   VPQRRERLYIIDFLNP----SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           VPQ RER+ I+ F         +F FP        + +IL+  ID K T+S+KLW   Q 
Sbjct: 270 VPQHRERIMIVGFNQDVFHGKEQFAFPEQKQSTRSIKEILDPDIDGKYTLSDKLWSYLQN 329

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             E ++  G GFG+G+   N   + TLSARYYKDGSEI
Sbjct: 330 YAEKHRAKGNGFGFGMVDLN-GISRTLSARYYKDGSEI 366


>gi|311279100|ref|YP_003941331.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
 gi|308748295|gb|ADO48047.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
          Length = 492

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F      G+    +P  G++LE  +D K  ++  
Sbjct: 290 RHF-LPQHRERIVLVGFRRDLNLHQGFSLRALPGLYPAQRPTFGELLEPTVDAKFILTPV 348

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYGL       +   TLSARYYKDG+EI
Sbjct: 349 LWKYLYRYAKKHQARGNGFGYGLVDPTNPDSVARTLSARYYKDGAEI 395


>gi|297622183|ref|YP_003675732.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
 gi|296492002|gb|ADH29504.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
          Length = 491

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 292 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 350

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 351 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|165938005|ref|ZP_02226565.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165914028|gb|EDR32645.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Yersinia pestis biovar Orientalis
           str. IP275]
          Length = 282

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 83  KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 141

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 142 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 188


>gi|323486195|ref|ZP_08091524.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|323400521|gb|EGA92890.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 382

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP----SVEFKFP-TPLGIKPRLGDILEEHIDDKSTISN 55
           +   +F VPQ RER+ I+ F        ++F F  TP   KP + DIL++ +D+K T+S+
Sbjct: 204 LDGQNF-VPQHRERIIIVGFDRERYGQDIKFDFEITPAIPKPVMKDILDKKVDEKYTLSD 262

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           KLW   Q     +K AG GFGYG+       + T+SARYYKDGSEI
Sbjct: 263 KLWIYLQSYAAKHKAAGNGFGYGI-APLDGVSRTISARYYKDGSEI 307


>gi|296538000|gb|ADH30019.1| EcoRII cytosine methylase [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|160431610|ref|YP_001551777.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin]
 gi|298206539|ref|YP_003717476.1| EcoRII modification enzyme [Escherichia coli]
 gi|159885479|dbj|BAF93082.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|296537944|gb|ADH29964.1| EcoRII modification enzyme [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|113706802|ref|YP_724464.1| DNA cytosine methylase [Escherichia coli]
 gi|190576899|ref|YP_001966231.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|194433606|ref|ZP_03065883.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|209901141|ref|YP_002286923.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|209901236|ref|YP_002287017.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|215528089|ref|YP_002332862.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|302141639|ref|YP_003813098.1| EcoRII methylase [Klebsiella pneumoniae]
 gi|127448|sp|P05101|MTE2_ECOLX RecName: Full=Modification methylase EcoRII; Short=M.EcoRII;
           AltName: Full=Cytosine-specific methyltransferase EcoRII
 gi|41317|emb|CAA28725.1| unnamed protein product [Escherichia coli HB101]
 gi|109390538|gb|ABG33840.1| EcoRII modification enzyme [Escherichia coli]
 gi|110264483|gb|ABG56846.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|165928612|gb|ABY74380.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|194418198|gb|EDX34290.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|197092209|gb|ACH42172.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|209574187|gb|ACI63075.1| modification methylase [Klebsiella pneumoniae]
 gi|209574298|gb|ACI63184.1| modification methylase [Klebsiella pneumoniae]
 gi|296033904|gb|ADG84867.1| EcoRII methylase [Klebsiella pneumoniae]
          Length = 477

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|283785730|ref|YP_003365595.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
 gi|282949184|emb|CBG88792.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
          Length = 477

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 6   FGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLW 58
           + +PQ RER+ ++ F    N   +F            +  L ++LE  ++ K  ++  LW
Sbjct: 275 YFLPQHRERIVLVGFRRDLNLKGDFTLRDISTRYPQRRTTLAELLEPVVEAKYVLTPVLW 334

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           +   +  + ++  G GFGYG+   +     T TLSARYYKDG+EI
Sbjct: 335 KYLYRYAKKHQAKGNGFGYGMVSPSDPNSVTRTLSARYYKDGAEI 379


>gi|134044844|ref|YP_001102126.1| cytosine-specific methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|133905378|gb|ABO42140.1| cytosine-specific methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
          Length = 274

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 75  KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 133

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 134 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 180


>gi|62180565|ref|YP_216982.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128198|gb|AAX65901.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715041|gb|EFZ06612.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 476

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|218695565|ref|YP_002403232.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|256022383|ref|ZP_05436248.1| DNA cytosine methylase [Escherichia sp. 4_1_40B]
 gi|218352297|emb|CAU98056.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|323972739|gb|EGB67939.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
 gi|332343686|gb|AEE57020.1| DNA-cytosine methyltransferase [Escherichia coli UMNK88]
          Length = 472

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238787820|ref|ZP_04631617.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
 gi|238724163|gb|EEQ15806.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
          Length = 475

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N   +F            +P  G++LE  + DK  ++  
Sbjct: 278 KNF-LPQHRERIVLVGFRKDLNIDKDFTLKDINKFFPEKRPEFGELLESVVADKYILTPH 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LW+      + ++  G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWKYLYNYAKKHQAKGNGFGFGLVDPTNSESVARTLSARYHKDGSEI 383


>gi|301029418|ref|ZP_07192512.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877722|gb|EFI85933.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 273 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 331

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 332 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|161505003|ref|YP_001572115.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866350|gb|ABX22973.1| hypothetical protein SARI_03133 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 474

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N    F            +P  G +L+  +D K  +S K
Sbjct: 278 KNF-LPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|168462467|ref|ZP_02696398.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443436|ref|YP_002041256.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|238912436|ref|ZP_04656273.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|194402099|gb|ACF62321.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195634356|gb|EDX52708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|200390041|ref|ZP_03216652.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602486|gb|EDZ01032.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168239231|ref|ZP_02664289.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734985|ref|YP_002115026.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204931362|ref|ZP_03222061.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194710487|gb|ACF89708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288080|gb|EDY27467.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204319845|gb|EDZ05054.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|167552776|ref|ZP_02346527.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322616|gb|EDZ10455.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|322616984|gb|EFY13892.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618223|gb|EFY15115.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625894|gb|EFY22713.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626346|gb|EFY23156.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632761|gb|EFY29506.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639103|gb|EFY35796.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640419|gb|EFY37075.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647220|gb|EFY43719.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648528|gb|EFY44979.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655540|gb|EFY51848.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660318|gb|EFY56556.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662999|gb|EFY59206.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668184|gb|EFY64343.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674057|gb|EFY70151.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675591|gb|EFY71665.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682998|gb|EFY79014.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686692|gb|EFY82670.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195420|gb|EFZ80600.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198052|gb|EFZ83169.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204476|gb|EFZ89482.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207566|gb|EFZ92514.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210995|gb|EFZ95855.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217551|gb|EGA02270.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323226697|gb|EGA10894.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231573|gb|EGA15686.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236016|gb|EGA20095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240586|gb|EGA24629.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245478|gb|EGA29478.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247596|gb|EGA31547.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254424|gb|EGA38240.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257764|gb|EGA41444.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262129|gb|EGA45692.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266252|gb|EGA49742.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270729|gb|EGA54168.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPGSVARTLSARYYKDGAEI 378


>gi|161613440|ref|YP_001587405.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205352316|ref|YP_002226117.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856496|ref|YP_002243147.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|161362804|gb|ABX66572.1| hypothetical protein SPAB_01156 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205272097|emb|CAR36949.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708299|emb|CAR32602.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627365|gb|EGE33708.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168259722|ref|ZP_02681695.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205351069|gb|EDZ37700.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNISRCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|198242597|ref|YP_002215094.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937113|gb|ACH74446.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622842|gb|EGE29187.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNISRCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|259909642|ref|YP_002649998.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965264|emb|CAX56796.1| Cytosine-specific methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|261863687|gb|ACY01298.1| unknown [Erwinia pyrifoliae]
 gi|283479721|emb|CAY75637.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 473

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N    F            +P  G +LE+ +D K  ++ +
Sbjct: 278 KNF-LPQHRERIVLVGFRRDLNIHQNFTLSNISRYFPDKRPEFGSLLEKTVDSKYILTPR 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPTNSGSVARTLSARYHKDGSEI 383


>gi|197251440|ref|YP_002146032.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215143|gb|ACH52540.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|157147667|ref|YP_001454986.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157084872|gb|ABV14550.1| hypothetical protein CKO_03470 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N    F            +P  G +L+  +D K  +S K
Sbjct: 278 KNF-LPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|167035739|ref|YP_001670970.1| DNA cytosine methylase [Pseudomonas putida GB-1]
 gi|166862227|gb|ABZ00635.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
          Length = 447

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 6   FGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLW 58
           +  PQ RER+ ++ F         F            +P LGDIL+E +DDK  ++ KLW
Sbjct: 259 YFTPQHRERIVLVGFRKDLGVHSGFTLKDIAELFPKKRPALGDILDEKVDDKYILTPKLW 318

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +        +K  G GFG+GL  + S+ T TLSARYYKDGSEI
Sbjct: 319 QYLFNYAIKHKAKGNGFGFGLVGK-SSVTRTLSARYYKDGSEI 360


>gi|56413096|ref|YP_150171.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362022|ref|YP_002141659.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127353|gb|AAV76859.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093499|emb|CAR58960.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|16765328|ref|NP_460943.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993566|ref|ZP_02574660.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|16420526|gb|AAL20902.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205328427|gb|EDZ15191.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247157|emb|CBG24980.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993981|gb|ACY88866.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158505|emb|CBW18015.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912981|dbj|BAJ36955.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224636|gb|EFX49699.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130270|gb|ADX17700.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988880|gb|AEF07863.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|82776352|ref|YP_402701.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|309789422|ref|ZP_07684012.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
 gi|81240500|gb|ABB61210.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|308922816|gb|EFP68333.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
          Length = 472

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|224583511|ref|YP_002637309.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468038|gb|ACN45868.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 476

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|118614638|ref|YP_908421.1| DNA methyltrasferase [Photobacterium damselae subsp. piscicida]
 gi|118596729|dbj|BAF38033.1| DNA methyltrasferase [Photobacterium damselae subsp. piscicida]
          Length = 266

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 67  KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 125

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 126 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 172


>gi|168244842|ref|ZP_02669774.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449372|ref|YP_002046042.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407676|gb|ACF67895.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336375|gb|EDZ23139.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 476

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|168234164|ref|ZP_02659222.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168821682|ref|ZP_02833682.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470868|ref|ZP_03076852.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263635|ref|ZP_03163709.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|194457232|gb|EDX46071.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197241890|gb|EDY24510.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331847|gb|EDZ18611.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341769|gb|EDZ28533.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085391|emb|CBY95172.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 476

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|16760934|ref|NP_456551.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141374|ref|NP_804716.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213424982|ref|ZP_03357732.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|289829483|ref|ZP_06547095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25286126|pir||AH0754 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16503231|emb|CAD05739.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137001|gb|AAO68565.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 476

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|193071315|ref|ZP_03052233.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331683510|ref|ZP_08384111.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|192955357|gb|EDV85842.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331079725|gb|EGI50922.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 472

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|188494720|ref|ZP_03001990.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
 gi|188489919|gb|EDU65022.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
          Length = 472

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDINLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300899219|ref|ZP_07117494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|300357175|gb|EFJ73045.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 477

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F      G  P     L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISGCFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|323186716|gb|EFZ72038.1| DNA-cytosine methyltransferase [Escherichia coli RN587/1]
          Length = 472

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|215487159|ref|YP_002329590.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967158|ref|ZP_07781376.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
 gi|215265231|emb|CAS09622.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312288622|gb|EFR16524.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
          Length = 472

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|152970972|ref|YP_001336081.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955821|gb|ABR77851.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 477

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           ++P  G++LE  +D K  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYPAVRPTFGELLEPTVDSKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|331643338|ref|ZP_08344469.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
 gi|331036809|gb|EGI09033.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
          Length = 491

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 292 KHF-LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEHRPSFGELLEPVVDSKYILTPK 350

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 351 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|288934555|ref|YP_003438614.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
 gi|288889264|gb|ADC57582.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
          Length = 466

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           ++P  G++LE  +D K  ++  
Sbjct: 263 RHF-LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTVDAKFILTPV 321

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 322 LWKYLYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 368


>gi|218701133|ref|YP_002408762.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218371119|emb|CAR18947.1| Modification methylase EcoRII (M.EcoRII) (Cytosine-specific
           methyltransferase EcoRII) [Escherichia coli IAI39]
          Length = 491

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 292 KHF-LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEHRPSFGELLEPVVDSKYILTPK 350

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 351 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 397


>gi|206577074|ref|YP_002237693.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206566132|gb|ACI07908.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           ++P  G++LE  +D K  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTVDAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 379


>gi|194430436|ref|ZP_03062919.1| DNA-cytosine methyltransferase [Escherichia coli B171]
 gi|194411515|gb|EDX27854.1| DNA-cytosine methyltransferase [Escherichia coli B171]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQCVTRTLSARYYKDGAEI 374


>gi|238895488|ref|YP_002920223.1| DNA cytosine methylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330000908|ref|ZP_08303852.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238547805|dbj|BAH64156.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537840|gb|EGF64032.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           ++P  G++LE  +D K  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYPAVRPTFGELLEPTVDAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|323977859|gb|EGB72945.1| DNA-cytosine methyltransferase [Escherichia coli TW10509]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLREISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323968376|gb|EGB63783.1| DNA-cytosine methyltransferase [Escherichia coli M863]
 gi|327253092|gb|EGE64746.1| DNA-cytosine methyltransferase [Escherichia coli STEC_7v]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLREISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300931174|ref|ZP_07146520.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300461007|gb|EFK24500.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|301018179|ref|ZP_07182696.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300399832|gb|EFJ83370.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|309795932|ref|ZP_07690345.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308120382|gb|EFO57644.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|168234623|ref|ZP_02659681.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736513|ref|YP_002117411.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712015|gb|ACF91236.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291717|gb|EDY31067.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 474

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N    F            +P  G +L+  +D K  +S K
Sbjct: 278 KNF-LPQHRERIVLVGFRRDLNIHQGFTLKNIDKFYPEKRPTFGQLLDSVVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|161617789|ref|YP_001591754.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161367153|gb|ABX70921.1| hypothetical protein SPAB_05653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 474

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N    F            +P  G +L+  +D K  +S K
Sbjct: 278 KNF-LPQHRERIVLVGFRRDLNIHQGFTLKNIDKFYPEKRPTFGQLLDSVVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEI 383


>gi|323960520|gb|EGB56149.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEHRPSFGELLEPVVDSKYILTPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|307139342|ref|ZP_07498698.1| DNA cytosine methylase [Escherichia coli H736]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKGFTLRDISRFYPEHRPSFGELLEPVVDSKYILTPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 383


>gi|291283137|ref|YP_003499955.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209766674|gb|ACI81649.1| DNA cytosine methylase [Escherichia coli]
 gi|290763010|gb|ADD56971.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300994233|ref|ZP_07180788.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300304943|gb|EFJ59463.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 477

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|74312499|ref|YP_310918.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|73855976|gb|AAZ88683.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|323168918|gb|EFZ54598.1| DNA-cytosine methyltransferase [Shigella sonnei 53G]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|260855934|ref|YP_003229825.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300822269|ref|ZP_07102410.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|257754583|dbj|BAI26085.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300525152|gb|EFK46221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|309702249|emb|CBJ01566.1| DNA-cytosine methyltransferase [Escherichia coli ETEC H10407]
 gi|323937230|gb|EGB33510.1| DNA-cytosine methyltransferase [Escherichia coli E1520]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|24113334|ref|NP_707844.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30063396|ref|NP_837567.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110805927|ref|YP_689447.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|24052347|gb|AAN43551.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30041648|gb|AAP17376.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110615475|gb|ABF04142.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|281601397|gb|ADA74381.1| Cytosine-specific methyltransferase [Shigella flexneri 2002017]
 gi|313650184|gb|EFS14597.1| DNA-cytosine methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|332756118|gb|EGJ86471.1| DNA-cytosine methyltransferase [Shigella flexneri 4343-70]
 gi|332757312|gb|EGJ87649.1| DNA-cytosine methyltransferase [Shigella flexneri 2747-71]
 gi|332757528|gb|EGJ87863.1| DNA-cytosine methyltransferase [Shigella flexneri K-671]
 gi|332766700|gb|EGJ96904.1| cytosine-specific methyltransferase [Shigella flexneri 2930-71]
 gi|333003060|gb|EGK22614.1| DNA-cytosine methyltransferase [Shigella flexneri VA-6]
 gi|333003307|gb|EGK22853.1| DNA-cytosine methyltransferase [Shigella flexneri K-218]
 gi|333004068|gb|EGK23602.1| DNA-cytosine methyltransferase [Shigella flexneri K-272]
 gi|333017687|gb|EGK36999.1| DNA-cytosine methyltransferase [Shigella flexneri K-304]
 gi|333017841|gb|EGK37148.1| DNA-cytosine methyltransferase [Shigella flexneri K-227]
          Length = 472

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|237732007|ref|ZP_04562488.1| DNA cytosine methylase [Citrobacter sp. 30_2]
 gi|226907546|gb|EEH93464.1| DNA cytosine methylase [Citrobacter sp. 30_2]
          Length = 476

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +  L ++LE  +D K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKSDFTLRDIVTRYPQRRTTLAELLEPTVDAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ +     + T TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPGNPDSVTRTLSARYYKDGAEI 378


>gi|330911766|gb|EGH40276.1| DNA-cytosine methyltransferase [Escherichia coli AA86]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|320641809|gb|EFX11197.1| DNA cytosine methylase [Escherichia coli O157:H7 str. G5101]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|91211180|ref|YP_541166.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|117624099|ref|YP_853012.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218558817|ref|YP_002391730.1| DNA cytosine methylase [Escherichia coli S88]
 gi|91072754|gb|ABE07635.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|115513223|gb|ABJ01298.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218365586|emb|CAR03313.1| DNA cytosine methylase [Escherichia coli S88]
 gi|294492656|gb|ADE91412.1| DNA-cytosine methyltransferase [Escherichia coli IHE3034]
 gi|307626564|gb|ADN70868.1| DNA cytosine methylase [Escherichia coli UM146]
 gi|323952452|gb|EGB48325.1| DNA-cytosine methyltransferase [Escherichia coli H252]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|15802395|ref|NP_288421.1| DNA cytosine methylase [Escherichia coli O157:H7 EDL933]
 gi|15831953|ref|NP_310726.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|16129907|ref|NP_416470.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108792|ref|AP_002572.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. W3110]
 gi|168752207|ref|ZP_02777229.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758275|ref|ZP_02783282.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168771615|ref|ZP_02796622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777717|ref|ZP_02802724.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783359|ref|ZP_02808366.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789321|ref|ZP_02814328.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801737|ref|ZP_02826744.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|170081604|ref|YP_001730924.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|195939267|ref|ZP_03084649.1| DNA cytosine methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810340|ref|ZP_03252216.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816602|ref|ZP_03257722.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821263|ref|ZP_03261583.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400193|ref|YP_002271076.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919382|ref|YP_002293466.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217328629|ref|ZP_03444710.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218689956|ref|YP_002398168.1| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238901165|ref|YP_002926961.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253773091|ref|YP_003035922.1| DNA cytosine methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254793611|ref|YP_003078448.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|256017846|ref|ZP_05431711.1| DNA cytosine methylase [Shigella sp. D9]
 gi|261227545|ref|ZP_05941826.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254631|ref|ZP_05947164.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293415271|ref|ZP_06657914.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300818618|ref|ZP_07098826.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300920181|ref|ZP_07136630.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|301327749|ref|ZP_07220953.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301644580|ref|ZP_07244570.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307312454|ref|ZP_07592088.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|312973821|ref|ZP_07787993.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|332278872|ref|ZP_08391285.1| DNA cytosine methylase [Shigella sp. D9]
 gi|83305674|sp|P0AEE0|DCM_ECO57 RecName: Full=DNA-cytosine methyltransferase
 gi|83305675|sp|P0AED9|DCM_ECOLI RecName: Full=DNA-cytosine methyltransferase; AltName:
           Full=M.EcoDcm
 gi|12516070|gb|AAG56975.1|AE005418_3 DNA cytosine methylase [Escherichia coli O157:H7 str. EDL933]
 gi|41239|emb|CAA31705.1| unnamed protein product [Escherichia coli K-12]
 gi|145719|gb|AAA03723.1| DNA cytosine methylase [Escherichia coli]
 gi|1736630|dbj|BAA15788.1| DNA cytosine methylase [Escherichia coli str. K12 substr. W3110]
 gi|1788271|gb|AAC75027.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362167|dbj|BAB36122.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|169889439|gb|ACB03146.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|187767102|gb|EDU30946.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013903|gb|EDU52025.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999305|gb|EDU68291.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354901|gb|EDU73320.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359668|gb|EDU78087.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371047|gb|EDU89463.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376137|gb|EDU94553.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|208724856|gb|EDZ74563.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730945|gb|EDZ79634.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741386|gb|EDZ89068.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161593|gb|ACI39026.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766668|gb|ACI81646.1| DNA cytosine methylase [Escherichia coli]
 gi|209766670|gb|ACI81647.1| DNA cytosine methylase [Escherichia coli]
 gi|209766672|gb|ACI81648.1| DNA cytosine methylase [Escherichia coli]
 gi|209766676|gb|ACI81650.1| DNA cytosine methylase [Escherichia coli]
 gi|209912641|dbj|BAG77715.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217317976|gb|EEC26403.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218427520|emb|CAR08415.2| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238860813|gb|ACR62811.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253324135|gb|ACT28737.1| DNA-cytosine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254593011|gb|ACT72372.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|260448927|gb|ACX39349.1| DNA-cytosine methyltransferase [Escherichia coli DH1]
 gi|291432919|gb|EFF05898.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300412803|gb|EFJ96113.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300528790|gb|EFK49852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300845711|gb|EFK73471.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301077088|gb|EFK91894.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|306907625|gb|EFN38128.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|310332416|gb|EFP99651.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|315061260|gb|ADT75587.1| DNA cytosine methylase [Escherichia coli W]
 gi|315136597|dbj|BAJ43756.1| DNA cytosine methylase [Escherichia coli DH1]
 gi|320191934|gb|EFW66581.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198651|gb|EFW73251.1| DNA-cytosine methyltransferase [Escherichia coli EC4100B]
 gi|320647167|gb|EFX16000.1| DNA cytosine methylase [Escherichia coli O157:H- str. 493-89]
 gi|320652452|gb|EFX20750.1| DNA cytosine methylase [Escherichia coli O157:H- str. H 2687]
 gi|320658054|gb|EFX25816.1| DNA cytosine methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658625|gb|EFX26319.1| DNA cytosine methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668523|gb|EFX35350.1| DNA cytosine methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323174657|gb|EFZ60277.1| DNA-cytosine methyltransferase [Escherichia coli LT-68]
 gi|323183944|gb|EFZ69331.1| DNA-cytosine methyltransferase [Escherichia coli 1357]
 gi|323378163|gb|ADX50431.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
 gi|323948336|gb|EGB44323.1| DNA-cytosine methyltransferase [Escherichia coli H120]
 gi|326342371|gb|EGD66152.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1044]
 gi|326344875|gb|EGD68622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|332101224|gb|EGJ04570.1| DNA cytosine methylase [Shigella sp. D9]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|110642066|ref|YP_669796.1| DNA cytosine methylase [Escherichia coli 536]
 gi|191173268|ref|ZP_03034798.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|110343658|gb|ABG69895.1| DNA-cytosine methyltransferase [Escherichia coli 536]
 gi|190906385|gb|EDV65994.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|222033699|emb|CAP76440.1| DNA-cytosine methyltransferase [Escherichia coli LF82]
 gi|312946553|gb|ADR27380.1| DNA cytosine methylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|324013473|gb|EGB82692.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|325499566|gb|EGC97425.1| DNA cytosine methylase [Escherichia fergusonii ECD227]
          Length = 473

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G +LE  +D K  +S K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQRPLFGQLLESSVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LW+      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 383


>gi|324112381|gb|EGC06359.1| DNA-cytosine methyltransferase [Escherichia fergusonii B253]
          Length = 473

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G +LE  +D K  +S K
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQRPLFGQLLESSVDSKYILSPK 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LW+      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 337 LWQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 383


>gi|315296465|gb|EFU55762.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 476

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 273 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 331

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 332 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|315286667|gb|EFU46100.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 475

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 272 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 330

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 331 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 377


>gi|170681403|ref|YP_001743285.1| DNA cytosine methylase [Escherichia coli SMS-3-5]
 gi|170519121|gb|ACB17299.1| DNA-cytosine methyltransferase [Escherichia coli SMS-3-5]
 gi|324119009|gb|EGC12898.1| DNA-cytosine methyltransferase [Escherichia coli E1167]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|191169235|ref|ZP_03030988.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
 gi|190900713|gb|EDV60509.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|331668651|ref|ZP_08369499.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331063845|gb|EGI35756.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 458

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 255 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 313

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 314 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 360


>gi|300975476|ref|ZP_07173024.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|300410366|gb|EFJ93904.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
          Length = 472

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|315290247|gb|EFU49625.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 478

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 275 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 333

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 334 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 380


>gi|300940416|ref|ZP_07155001.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300454810|gb|EFK18303.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 476

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 273 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 331

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 332 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 378


>gi|300923873|ref|ZP_07139889.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300419870|gb|EFK03181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
          Length = 477

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|26248232|ref|NP_754272.1| DNA cytosine methylase [Escherichia coli CFT073]
 gi|227885611|ref|ZP_04003416.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|237705920|ref|ZP_04536401.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|331647554|ref|ZP_08348646.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|26108636|gb|AAN80839.1|AE016762_92 DNA-cytosine methyltransferase [Escherichia coli CFT073]
 gi|226900677|gb|EEH86936.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837184|gb|EEJ47650.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|281179022|dbj|BAI55352.1| DNA cytosine methylase [Escherichia coli SE15]
 gi|307553973|gb|ADN46748.1| DNA cytosine methylase [Escherichia coli ABU 83972]
 gi|320194327|gb|EFW68958.1| DNA-cytosine methyltransferase [Escherichia coli WV_060327]
 gi|323956356|gb|EGB52099.1| DNA-cytosine methyltransferase [Escherichia coli H263]
 gi|324005878|gb|EGB75097.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331043278|gb|EGI15416.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323962004|gb|EGB57603.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|284921868|emb|CBG34943.1| DNA-cytosine methyltransferase [Escherichia coli 042]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323191533|gb|EFZ76794.1| modification methylase EcoRII [Escherichia coli RN587/1]
          Length = 474

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +P  G++L+ ++DDK  ++ +
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQNRPTFGELLDHNVDDKYILTPR 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL       +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|331663456|ref|ZP_08364366.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|331059255|gb|EGI31232.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|293410317|ref|ZP_06653893.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470785|gb|EFF13269.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|218699478|ref|YP_002407107.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218369464|emb|CAR17229.1| DNA cytosine methylase [Escherichia coli IAI39]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|218551294|ref|YP_002385086.1| DNA cytosine methylase [Escherichia fergusonii ATCC 35469]
 gi|218358836|emb|CAQ91493.1| DNA modification methylase [Escherichia fergusonii ATCC 35469]
          Length = 485

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G +LE  +D K  +S K
Sbjct: 290 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDIDRFYPQQRPLFGQLLESSVDSKYILSPK 348

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           LW+      + +   G GFG+GL   N  ++   TLSARY+KDGSEI
Sbjct: 349 LWQYLYNYAKKHAAKGNGFGFGLVDPNNANSVARTLSARYHKDGSEI 395


>gi|170019707|ref|YP_001724661.1| DNA cytosine methylase [Escherichia coli ATCC 8739]
 gi|169754635|gb|ACA77334.1| DNA-cytosine methyltransferase [Escherichia coli ATCC 8739]
 gi|323940380|gb|EGB36571.1| DNA-cytosine methyltransferase [Escherichia coli E482]
 gi|332093084|gb|EGI98148.1| DNA-cytosine methyltransferase [Shigella boydii 5216-82]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|331653374|ref|ZP_08354379.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|331049472|gb|EGI21544.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|301050676|ref|ZP_07197538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300297633|gb|EFJ54018.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 477

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|82543581|ref|YP_407528.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|81244992|gb|ABB65700.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|332096894|gb|EGJ01883.1| DNA-cytosine methyltransferase [Shigella boydii 3594-74]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|187732725|ref|YP_001879611.1| DNA cytosine methylase [Shigella boydii CDC 3083-94]
 gi|293446340|ref|ZP_06662762.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|187429717|gb|ACD08991.1| DNA-cytosine methyltransferase [Shigella boydii CDC 3083-94]
 gi|291323170|gb|EFE62598.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|320175451|gb|EFW50550.1| DNA-cytosine methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320184499|gb|EFW59303.1| DNA-cytosine methyltransferase [Shigella flexneri CDC 796-83]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|331671799|ref|ZP_08372595.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
 gi|331070788|gb|EGI42147.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
          Length = 474

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +P  G++L+  +DDK  ++ +
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQNRPTFGELLDHDVDDKYILTPR 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL       +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|324018843|gb|EGB88062.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|307138628|ref|ZP_07497984.1| DNA cytosine methylase [Escherichia coli H736]
 gi|331642581|ref|ZP_08343716.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331039379|gb|EGI11599.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300956520|ref|ZP_07168803.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300316661|gb|EFJ66445.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 477

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 274 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 379


>gi|218554541|ref|YP_002387454.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|260868553|ref|YP_003234955.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|218361309|emb|CAQ98893.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|257764909|dbj|BAI36404.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|323180787|gb|EFZ66327.1| DNA-cytosine methyltransferase [Escherichia coli 1180]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|193066646|ref|ZP_03047681.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|260844359|ref|YP_003222137.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
 gi|192925721|gb|EDV80380.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|257759506|dbj|BAI31003.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|320182772|gb|EFW57655.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|218705454|ref|YP_002412973.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|293405443|ref|ZP_06649435.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298381087|ref|ZP_06990686.1| DNA cytosine methylase [Escherichia coli FVEC1302]
 gi|218432551|emb|CAR13444.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|291427651|gb|EFF00678.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298278529|gb|EFI20043.1| DNA cytosine methylase [Escherichia coli FVEC1302]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|323158561|gb|EFZ44575.1| DNA-cytosine methyltransferase [Escherichia coli E128010]
          Length = 472

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F         P     L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVMLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQCVTRTLSARYYKDGAEI 374


>gi|331645413|ref|ZP_08346517.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
 gi|331045575|gb|EGI17701.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
          Length = 474

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +P  G++L+ ++DDK  ++ +
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQNRPTFGELLDHNVDDKYILTPR 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL       +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|300951590|ref|ZP_07165422.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300449174|gb|EFK12794.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 478

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 275 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 333

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 334 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 380


>gi|194433657|ref|ZP_03065933.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|194418086|gb|EDX34179.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|332095525|gb|EGJ00541.1| DNA-cytosine methyltransferase [Shigella dysenteriae 155-74]
          Length = 472

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDFNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|146312197|ref|YP_001177271.1| DNA cytosine methylase [Enterobacter sp. 638]
 gi|145319073|gb|ABP61220.1| DNA-cytosine methyltransferase [Enterobacter sp. 638]
          Length = 471

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F       +    +P + ++LE   D K  ++  
Sbjct: 268 KHF-LPQHRERIVLVGFRRDLNLKGDFTLRDIPSLYPAHRPSVAELLEPAFDAKFILTPV 326

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFG+G+    +    T TLSARYYKDG+EI
Sbjct: 327 LWKYLYRYAKKHQAKGNGFGFGMVDPRNPHSVTRTLSARYYKDGAEI 373


>gi|157158517|ref|YP_001463262.1| DNA cytosine methylase [Escherichia coli E24377A]
 gi|157080547|gb|ABV20255.1| DNA-cytosine methyltransferase [Escherichia coli E24377A]
          Length = 472

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDSMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|213581465|ref|ZP_03363291.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 295

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 108 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 167

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 168 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 210


>gi|327254549|gb|EGE66165.1| modification methylase EcoRII [Escherichia coli STEC_7v]
          Length = 474

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +P  G++L+  +DDK  ++ +
Sbjct: 278 KHF-LPQHRERIVLVGFRRDLNIHKDFTLRNINRFYPQNRPTFGELLDHDVDDKYILTPR 336

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL       +   TLSARY+KDGSEI
Sbjct: 337 LWEYLYNYAKKHAAKGNGFGFGLVDPKNPDSIARTLSARYHKDGSEI 383


>gi|48093754|gb|AAT40239.1| Eco128I DNA methylase [Escherichia coli]
          Length = 332

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++LE  +D K  ++ K
Sbjct: 197 KHF-LPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPK 255

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 256 LWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEI 302


>gi|291085206|ref|ZP_06352388.2| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291072321|gb|EFE10430.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 476

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFLNP---SVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F        +F         PR    L D+LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGFRRDLQLKSDFTLRNIATCYPRRRTTLADLLEPTVEAKYVLTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ +       T TLSARYYKDG+EI
Sbjct: 336 LYRYAKKHQARGNGFGYGMVYPGNPDCVTRTLSARYYKDGAEI 378


>gi|94501925|ref|ZP_01308434.1| DNA-cytosine methyltransferase [Oceanobacter sp. RED65]
 gi|94425919|gb|EAT10918.1| DNA-cytosine methyltransferase [Oceanobacter sp. RED65]
          Length = 287

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 10/106 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKF---PTPLGIKPRLGDILEEHIDDKSTISNKL 57
            +F +PQ RER+ ++ F    N +  F     P P  + P L  +LE+ +D+K  ++ +L
Sbjct: 91  ANF-LPQHRERIVLVGFRKDLNLTNRFTLTNLPKPREV-PSLSSLLEKSVDEKYVLTPRL 148

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
           WE   +  + ++  G GFGYGL      SA   TLSARY+KDGSEI
Sbjct: 149 WEYLYEYAKKHQAKGNGFGYGLVDPKNSSAVCRTLSARYHKDGSEI 194


>gi|331673470|ref|ZP_08374238.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331069668|gb|EGI41055.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 472

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLG----IKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFSAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|306814216|ref|ZP_07448382.1| DNA cytosine methylase [Escherichia coli NC101]
 gi|305852375|gb|EFM52826.1| DNA cytosine methylase [Escherichia coli NC101]
          Length = 472

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISACFPAQRVTLAQLLDPIVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|238919389|ref|YP_002932904.1| DNA cytosine methylase [Edwardsiella ictaluri 93-146]
 gi|238868958|gb|ACR68669.1| modification methylase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            KP  G++LE  +D K  +S K
Sbjct: 276 KHF-LPQHRERIVLVGFRRDLNIHHDFTLQKIQQFYPEKKPTFGELLEPAVDSKYILSPK 334

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
           LWE      + +   G GFG+GL    +  +   TLSARY+KDGSEI
Sbjct: 335 LWEYLYNYAKKHAEKGNGFGFGLVDPKNKESIARTLSARYHKDGSEI 381


>gi|213622824|ref|ZP_03375607.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 324

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 124 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 183

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 184 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 226


>gi|331658007|ref|ZP_08358969.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331056255|gb|EGI28264.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 472

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPIVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|296282358|ref|ZP_06860356.1| DNA-cytosine methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 439

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLWEGH 61
           VPQ+RER++I+ F   S       + P  +   P+LG ILE H  +D K T++ +LWE  
Sbjct: 250 VPQKRERIFIVGFREKSAFNLAGLEIPA-VADGPKLGSILEPHDQVDPKYTLTPRLWEYL 308

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q+ ++ ++  G GFGY LF        TLSARY+KDGSEI
Sbjct: 309 QEYRKKHEAKGNGFGYSLFGPGD-VARTLSARYHKDGSEI 347


>gi|163732386|ref|ZP_02139832.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
 gi|161394684|gb|EDQ19007.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
          Length = 410

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 58/121 (47%), Gaps = 23/121 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDILEEH----------- 46
           + A  F VPQ RER+ I+ F    V F F     P   + R+ DIL              
Sbjct: 216 IDAAHF-VPQHRERIVIVGFR-EDVPFSFDDVILPPHRERRMRDILHPENGNENPESHFT 273

Query: 47  ------IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
                 +  K T+S+KLW+  Q     +K  G GFG+GL   +S    TLSARYYKDGSE
Sbjct: 274 LGNDAAVSGKYTLSDKLWKYLQDYAAKHKAKGNGFGFGLVDGDS-IARTLSARYYKDGSE 332

Query: 101 I 101
           I
Sbjct: 333 I 333


>gi|213650730|ref|ZP_03380783.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 405

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 205 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 264

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 265 LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 307


>gi|260598469|ref|YP_003211040.1| DNA cytosine methylase [Cronobacter turicensis z3032]
 gi|260217646|emb|CBA31957.1| DNA-cytosine methyltransferase [Cronobacter turicensis z3032]
          Length = 450

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGI----KPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F       +    +P  G++L+  +D +  ++  
Sbjct: 249 KHF-LPQHRERIVLVGFRRDLNLHDGFTLRALPELYPARRPAFGELLDPTVDARYVLTPT 307

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 308 LWKYLYRYAQKHQAKGNGFGYGLVDPQNPASVARTLSARYYKDGAEI 354


>gi|156933419|ref|YP_001437335.1| DNA cytosine methylase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531673|gb|ABU76499.1| hypothetical protein ESA_01237 [Cronobacter sakazakii ATCC BAA-894]
          Length = 481

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLG----IKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +P  G++L+  +D +  ++  
Sbjct: 280 KHF-LPQHRERIVLVGFRRSLNLHDGFTLRALPEFYPARRPAFGELLDPTVDARYVLTPT 338

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 339 LWKYLYRYAQKHQAKGNGFGYGLVDPQNPASVARTLSARYYKDGAEI 385


>gi|300904853|ref|ZP_07122678.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301304244|ref|ZP_07210359.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300403236|gb|EFJ86774.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300840501|gb|EFK68261.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315257206|gb|EFU37174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 472

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + +++ G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQVRGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|262043463|ref|ZP_06016586.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039205|gb|EEW40353.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 477

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           + P  G++LE  +D K  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLQLHAGFTLRDIAAQYPAVWPTFGELLEPTVDAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYARKHQARGNGFGYGLVDPANPHSVARTLSARYYKDGAEI 379


>gi|157161430|ref|YP_001458748.1| DNA cytosine methylase [Escherichia coli HS]
 gi|157067110|gb|ABV06365.1| DNA-cytosine methyltransferase [Escherichia coli HS]
          Length = 472

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQTRGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|157368818|ref|YP_001476807.1| DNA cytosine methylase [Serratia proteamaculans 568]
 gi|157320582|gb|ABV39679.1| DNA-cytosine methyltransferase [Serratia proteamaculans 568]
          Length = 491

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPT----PLGIKPRLGDILEEHIDDKSTISNK 56
            +F +PQ RER+ ++ F    N   +F            +P  G++L E +  K  ++  
Sbjct: 294 KNF-LPQHRERIVLVGFRRDLNIHGDFSLKNLSQFFPKKRPSFGELLLEDVAPKYILTEH 352

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           LW+      + ++  G GFG+GL      S+   TLSARY+KDGSEI
Sbjct: 353 LWKYLYNYAKKHQAKGNGFGFGLVNPKNESSVARTLSARYHKDGSEI 399


>gi|170769440|ref|ZP_02903893.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
 gi|170121764|gb|EDS90695.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
          Length = 472

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N    F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKASFTLRDINQCFPTQRVTLAQLLDPVVEAKYILTPV 327

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 328 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 374


>gi|300724477|ref|YP_003713798.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297631015|emb|CBJ91699.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPT----PLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N    F            +P L ++L+ ++D K  ++  LW+ 
Sbjct: 281 LPQHRERIVLVGFRRDLNIHQGFTLRNMNQLFPAQRPTLKELLDSNVDKKYILTPALWKY 340

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
                + ++  G GFG+GL F ++      TLSARY+KDGSEI
Sbjct: 341 LYNYAKKHQAKGNGFGFGLVFPDNPNSVARTLSARYHKDGSEI 383


>gi|290508755|ref|ZP_06548126.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289778149|gb|EFD86146.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 477

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F         F           ++P  G++LE   D K  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLQLHEGFTLRDIAALYPAVRPTFGELLEPTADAKFILTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +    ++  G GFGYGL    +      TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYARKHQARGNGFGYGLVDPGNPHSVARTLSARYYKDGAEI 379


>gi|323222338|gb|EGA06720.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
          Length = 259

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 59  LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 118

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 119 LYRYAKKHQARGNGFGYGMVYPDNPGSVARTLSARYYKDGAEI 161


>gi|331677842|ref|ZP_08378517.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331074302|gb|EGI45622.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 320

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 117 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPV 175

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ + N+    T TLSARYYKDG+EI
Sbjct: 176 LWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 222


>gi|317048624|ref|YP_004116272.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
 gi|316950241|gb|ADU69716.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
          Length = 467

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPR----LGDILEEHIDDKSTI 53
           + A  F +PQ RER+ ++     +     F       + P+    L  +LE   D K T+
Sbjct: 271 IDARHF-LPQHRERIVLVGIRRDTRLSEGFTLRALAQLYPKKVPTLKSLLEPQPDAKYTL 329

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           S  LW    +  + +K  G GFG+GL    +      TLSARYYKDGSEI
Sbjct: 330 SPVLWNYLYQYAKKHKAKGNGFGFGLNDPRNPSVCVRTLSARYYKDGSEI 379


>gi|56751653|ref|YP_172354.1| hypothetical protein syc1644_d [Synechococcus elongatus PCC 6301]
 gi|81301269|ref|YP_401477.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
 gi|56686612|dbj|BAD79834.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170150|gb|ABB58490.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 424

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/121 (39%), Positives = 61/121 (50%), Gaps = 23/121 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF---KFPTPLGIKPRLGDIL-------------- 43
           + A  F VPQ RER+YI+ F    V F    F  P      + DIL              
Sbjct: 228 IDAKGF-VPQHRERIYIVGFREE-VGFNWDSFSQPPTDTKCMADILHPNDGSEEVEEPYT 285

Query: 44  ---EEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
              E  ++DK T+S+KLW   Q     ++ AG GFG+GL  ++S    TLSARYYKDGSE
Sbjct: 286 VGIEAKVNDKYTLSDKLWNYLQNYANKHRAAGNGFGFGLVNKDS-IARTLSARYYKDGSE 344

Query: 101 I 101
           I
Sbjct: 345 I 345


>gi|294979850|pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
           Shigella Flexneri 2a Str. 301
          Length = 482

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 271 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPXVEAKYILTPV 329

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG  + N+    T TLSARYYKDG+EI
Sbjct: 330 LWKYLYRYAKKHQARGNGFGYGXVYPNNPQSVTRTLSARYYKDGAEI 376


>gi|213853126|ref|ZP_03382658.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 219

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++ F    N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 19  LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 78

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             +  + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 79  LYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 121


>gi|210631776|ref|ZP_03297018.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
 gi|210159896|gb|EEA90867.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
          Length = 390

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 10  QRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           Q RER+YI+ F +  V+F +          +  +ILE  +DD+  +S+KLW   +  K  
Sbjct: 231 QHRERIYIVGFRDD-VDFSWDDLDCPQNGQKAAEILETDVDDRYVLSDKLWSYLKAYKAK 289

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           ++ AG GFGYGL    S TT TLSARY+KDGSEI
Sbjct: 290 HEAAGNGFGYGLITP-SDTTRTLSARYHKDGSEI 322


>gi|255262721|ref|ZP_05342063.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
 gi|255105056|gb|EET47730.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
          Length = 421

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 13/114 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFP-------TPLGIKPRLGDILEEH--I 47
           + A +FGVPQ RER+YI+ F    V        P            + RLGD+LE +  +
Sbjct: 243 LAAKNFGVPQNRERVYIVGFDRDQVSEAEARDLPREILDGLKERKSETRLGDVLETNASV 302

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           D K TIS++L  GH++R   ++  G GFG+ LF   S   NT+SARYYKDGSE+
Sbjct: 303 DPKFTISDRLLAGHERRLRAHRAKGNGFGFSLFNAESPYCNTISARYYKDGSEV 356


>gi|157145245|ref|YP_001452564.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157082450|gb|ABV12128.1| hypothetical protein CKO_00981 [Citrobacter koseri ATCC BAA-895]
          Length = 477

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKP----RLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F         P     L ++LE  ++ +  ++  
Sbjct: 274 RHF-LPQHRERIVLVGFRRDLNLKTDFTLRDIATRYPQQRITLAELLEPAVEARYVLTPV 332

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG+ +  +    T TLSARYYKDG+EI
Sbjct: 333 LWKYLYRYAKKHQARGNGFGYGMVYPANPGSVTRTLSARYYKDGAEI 379


>gi|161502886|ref|YP_001569998.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864233|gb|ABX20856.1| hypothetical protein SARI_00944 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +PQ RER+ ++      N   +F            +P L ++LE  ++ K  ++  LW+ 
Sbjct: 276 LPQHRERIVLVGVRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKY 335

Query: 61  HQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
                + ++  G GFGYG+ + ++      TLSARYYKDG+EI
Sbjct: 336 LYCYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEI 378


>gi|291463698|pdb|3LX6|A Chain A, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
 gi|291463699|pdb|3LX6|B Chain B, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
          Length = 410

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 209 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPXVEAKYILTPV 267

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW+   +  + ++  G GFGYG  + N+    T TLSARYYKDG+EI
Sbjct: 268 LWKYLYRYAKKHQARGNGFGYGXVYPNNPQSVTRTLSARYYKDGAEI 314


>gi|86136173|ref|ZP_01054752.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
 gi|85827047|gb|EAQ47243.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
          Length = 399

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 54/115 (46%), Gaps = 22/115 (19%)

Query: 8   VPQRRERLYIIDFLNP-SVEFKFPT---PLGIKPRLGDILEEH----------------- 46
           VPQ RER++I  F       F       P G  PRL DIL                    
Sbjct: 207 VPQHRERIFISGFRRDVPTRFCLDDVVIPPGPNPRLSDILHPENGSEIAEPPYTEGHLAR 266

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           I DK T+S+KLW   Q     +K AG GFG+GL    S    TLSARYYKDGSEI
Sbjct: 267 IADKYTLSDKLWAYLQNYAAKHKAAGNGFGFGLCTPES-VARTLSARYYKDGSEI 320


>gi|10957343|ref|NP_058367.1| DNA cytosine methylase [Salmonella typhi]
 gi|7800396|gb|AAF69992.1|AF250878_153 EcoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|145849042|emb|CAM91602.1| ecoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 475

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ ++ F         F            +P LG++L+  +D +  +S KLWE  
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYL 337

Query: 62  QKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
               + ++  G GFG+GL      S    TLSARYY+DGSEI
Sbjct: 338 YNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|260752101|ref|YP_003237616.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257767571|dbj|BAI39065.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 475

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ ++ F         F            +P LG++L+  +D +  +S KLWE  
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYL 337

Query: 62  QKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
               + ++  G GFG+GL      S    TLSARYY+DGSEI
Sbjct: 338 YNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|296114735|ref|ZP_06833385.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978659|gb|EFG85387.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 419

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYIIDFLNPSVEFKF----PTPLGIKPRLGDIL--EEHIDDKSTISNKLWEGH 61
           VPQ+RER++I+ F     +F        P+   PRLG IL     ++ K T++  LW   
Sbjct: 230 VPQKRERIFIVGFR-EKTDFDLKSLVVPPIEKGPRLGSILLPHAEVEPKYTLTEHLWNYL 288

Query: 62  QKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           Q  K  +  AG GFG+GL   +     TLSARY+KDGSEI
Sbjct: 289 QNYKAKHAAAGNGFGFGLCGPDD-VARTLSARYFKDGSEI 327


>gi|18466581|ref|NP_569389.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|160431784|ref|YP_001551898.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|16505897|emb|CAD09776.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|159885325|dbj|BAF92929.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
          Length = 475

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ ++ F         F            +P LG++L+  +D +  +S KLWE  
Sbjct: 278 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYL 337

Query: 62  QKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
               + ++  G GFG+GL      S    TLSARYY+DGSEI
Sbjct: 338 YNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 379


>gi|313651376|gb|EFS15772.1| modification methylase EcoRII [Shigella flexneri 2a str. 2457T]
          Length = 463

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ ++ F         F            +P LG++L+  +D +  +S KLWE  
Sbjct: 266 PQHRERIVLVGFRRDLKLHDGFSLSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYL 325

Query: 62  QKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
               + ++  G GFG+GL      S    TLSARYY+DGSEI
Sbjct: 326 YNYAKKHQAKGNGFGFGLVNPLDKSVVCRTLSARYYRDGSEI 367


>gi|304398880|ref|ZP_07380750.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
 gi|304353584|gb|EFM17961.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
          Length = 458

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP----LGIKPRLGDILEEHIDDKSTIS 54
           + A  F +PQ RER+ ++         +F             P L  +LE   DDK  +S
Sbjct: 266 IDARHF-LPQHRERIVLVGIRRDLKKQDFTLRDIRRFYPAQVPSLQSLLERAPDDKYILS 324

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             LW    +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 325 PVLWRYLYQYAKKHKAKGNGFGFGLNDPHNPDCCVRTLSARYYKDGSEI 373


>gi|308187315|ref|YP_003931446.1| DNA cytosine methylase [Pantoea vagans C9-1]
 gi|308057825|gb|ADO09997.1| DNA cytosine methylase [Pantoea vagans C9-1]
          Length = 458

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP----LGIKPRLGDILEEHIDDKSTIS 54
           + A  F +PQ RER+ ++         +F             P L  +LE+  DDK  +S
Sbjct: 266 IDARHF-LPQHRERIVLVGIRRDLKKQDFTLRDIRRFYPAQVPSLQSLLEKAPDDKYILS 324

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
             LW    +  + +K  G GFG+GL    +      TLSARYYKDGSEI
Sbjct: 325 PVLWRYLYQYAKKHKAKGNGFGFGLNDPRNPDCCVRTLSARYYKDGSEI 373


>gi|315498495|ref|YP_004087299.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB
           48]
 gi|315416507|gb|ADU13148.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB
           48]
          Length = 410

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 56/121 (46%), Gaps = 23/121 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDILEEH----------- 46
           + A  F VPQ RER+ I+ F    V F +     P     +L  IL              
Sbjct: 218 IDAQHF-VPQHRERIVIVGFR-EDVPFSWDDLNLPPKGSVKLSSILHPENAIEEAEPPYT 275

Query: 47  ------IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
                 +  K T+++KLW   Q   + +K AG GFG+GL       + TLSARYYKDGSE
Sbjct: 276 TGIRAEVASKYTLTDKLWAYLQNYADKHKAAGNGFGFGLVGPGD-VSRTLSARYYKDGSE 334

Query: 101 I 101
           I
Sbjct: 335 I 335


>gi|212716092|ref|ZP_03324220.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661459|gb|EEB22034.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
          Length = 453

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 25/117 (21%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH------------------- 46
           VPQ RER+YI+ F +   +F +        KP L DIL ++                   
Sbjct: 242 VPQHRERIYIVGFRS-HTDFTWDDLKLPEHKPVLADILHKNDGTEPYLPWDGDRYFDYEH 300

Query: 47  --IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + DK T++ +LW+  Q  K  ++  G GFGYGL       + TLSARY+KDGSEI
Sbjct: 301 NKVQDKYTLTPRLWQYLQDYKAKHEAMGHGFGYGLVTP-DMVSRTLSARYHKDGSEI 356


>gi|327394286|dbj|BAK11708.1| modification methylase EcoRII [Pantoea ananatis AJ13355]
          Length = 459

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 6   FGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLW 58
           F +PQ RER+ ++        S +F             P L  +LE   DDK  +S  LW
Sbjct: 270 FFLPQHRERIVLVGIRRDIAGSAQFSLRDIRQFFPAQVPSLQSLLEPQPDDKYILSPVLW 329

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
               +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 330 RYLYQYAKKHKARGNGFGFGLNDPHNVHCCVRTLSARYYKDGSEI 374


>gi|188533556|ref|YP_001907353.1| DNA cytosine methylase [Erwinia tasmaniensis Et1/99]
 gi|188028598|emb|CAO96460.1| DNA-cytosine methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 469

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 4   CDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKL 57
             F +PQ RER+ ++ F        F       + PR    L  +L+  +++K  ++  L
Sbjct: 277 KHF-LPQHRERIVLVGFRRDLQLPAFSLSLLPALYPRQRTPLNALLDSQVEEKYILTPTL 335

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFGYGL      +    TLSARYYKDGSEI
Sbjct: 336 WKYLYHYAKKHQARGNGFGYGLVDPALENGVVRTLSARYYKDGSEI 381


>gi|291617874|ref|YP_003520616.1| EcoRIIM [Pantoea ananatis LMG 20103]
 gi|291152904|gb|ADD77488.1| EcoRIIM [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 6   FGVPQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLW 58
           F +PQ RER+ ++        S +F             P L  +LE   DDK  +S  LW
Sbjct: 270 FFLPQHRERIVLVGIRRDIAGSAQFSLRDIRQFFPAQVPSLQSLLEPQPDDKYILSPVLW 329

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
               +  + +K  G GFG+GL   ++      TLSARYYKDGSEI
Sbjct: 330 RYLYQYAKKHKARGNGFGFGLNDPHNVHCCVRTLSARYYKDGSEI 374


>gi|148244085|ref|YP_001220322.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400648|gb|ABQ29180.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
          Length = 487

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 24/116 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKF-----PTPLGIKPRLGDILEEH---------------- 46
           VPQ RER++I  F + + EF F     P P    PRL  IL                   
Sbjct: 291 VPQHRERIFIAGFRDRNAEFTFKTLDIPDP-ASGPRLASILHPEDGTEKPDGHFTEGPLA 349

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            + ++ T+++ LW   Q   E ++ AG GFG+GL         TLSARYYKDGSEI
Sbjct: 350 TVTERYTLTDHLWNYLQNYAEKHRRAGNGFGFGLCGPED-VARTLSARYYKDGSEI 404


>gi|66391578|ref|YP_239103.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
 gi|62288666|gb|AAX78649.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
          Length = 302

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQRRER++I+ FL+  V F FP P     R+GDILE+ +DD  T+S+  W+G
Sbjct: 144 LNTKDFGLPQRRERVFIVCFLDD-VFFSFPVPPRTPTRVGDILED-VDDSYTLSDNAWKG 201

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            ++RKE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 202 FRERKERNKANGKGFGYQAVTADSTHTGTITAQYYKDGVQ 241


>gi|310767946|gb|ADP12896.1| DNA cytosine methylase [Erwinia sp. Ejp617]
          Length = 467

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 4   CDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKL 57
             F +PQ RER+ ++ F        F       + P     L  +L+ H++ K  ++  L
Sbjct: 275 KHF-LPQHRERIILVGFRRDLKLPAFSLSALPALYPLQRTPLKALLDSHVEAKYILTPTL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYGL      +    TLSARYYKDGSEI
Sbjct: 334 WKYLYQYAKKHQARGNGFGYGLVDPVLENGVVRTLSARYYKDGSEI 379


>gi|259908144|ref|YP_002648500.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224963766|emb|CAX55267.1| DNA-cytosine methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283478063|emb|CAY73979.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 4   CDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKP----RLGDILEEHIDDKSTISNKL 57
             F +PQ RER+ ++ F        F       + P     L  +L+ H++ K  ++  L
Sbjct: 275 KHF-LPQHRERIILVGFRRDLKLPAFSLSALPALYPLQRTPLKALLDSHVEAKYILTPTL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           W+   +  + ++  G GFGYGL      +    TLSARYYKDGSEI
Sbjct: 334 WKYLYQYAKKHQARGNGFGYGLVDPALENGVVRTLSARYYKDGSEI 379


>gi|300717257|ref|YP_003742060.1| cytosine-specific methyltransferase [Erwinia billingiae Eb661]
 gi|299063093|emb|CAX60213.1| Cytosine-specific methyltransferase [Erwinia billingiae Eb661]
          Length = 466

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 4   CDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPR----LGDILEEHIDDKSTISNKL 57
             F +PQ RER+ ++         EF       + P+    L  ++E  +D K  ++  L
Sbjct: 275 KHF-LPQHRERIVLVGMRRDLKLPEFTLKALSTLYPKQRIPLRALMEPEVDSKYILTPTL 333

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
           W+      + ++  G GFGYGL      +    TLSARYYKDGSEI
Sbjct: 334 WKYLYNYAKKHQAKGNGFGYGLVDPQVETGVVRTLSARYYKDGSEI 379


>gi|239621327|ref|ZP_04664358.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515788|gb|EEQ55655.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 343

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPRLGDIL--EEHIDDKSTISNKL 57
           + A  F VPQ RER YI+ F   +  F F          +G IL     + DK  +S+KL
Sbjct: 179 IDAAGF-VPQHRERTYIVGFREEN-GFTFDDVKPIAHGNVGSILLPASQVPDKYVLSDKL 236

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W   Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 237 WTYLQNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 280


>gi|23466029|ref|NP_696632.1| modification methylase very EcoRII
           (cytosine-specificmethyltransferase [Bifidobacterium
           longum NCC2705]
 gi|23326750|gb|AAN25268.1| modification methylase very similar to EcoRII
           (cytosine-specificmethyltransferase [Bifidobacterium
           longum NCC2705]
          Length = 323

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPRLGDIL--EEHIDDKSTISNKL 57
           + A  F VPQ RER YI+ F   +  F F          +G IL     + DK  +S+KL
Sbjct: 159 IDAAGF-VPQHRERTYIVGFREEN-GFTFDDVKPIAHGNVGSILLPASQVPDKYVLSDKL 216

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W   Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 217 WTYLQNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 260


>gi|189439219|ref|YP_001954300.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|189427654|gb|ACD97802.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 323

 Score =  146 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPRLGDIL--EEHIDDKSTISNKL 57
           + A  F VPQ RER YI+ F   +  F F          +G IL     + DK  +S+KL
Sbjct: 159 IDAAGF-VPQHRERTYIVGFREEN-GFTFDDVKPIAHGNVGSILLPASQVPDKYVLSDKL 216

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W   Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 217 WTYLQNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 260


>gi|46191283|ref|ZP_00120453.2| COG0270: Site-specific DNA methylase [Bifidobacterium longum
           DJO10A]
          Length = 315

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPRLGDIL--EEHIDDKSTISNKL 57
           + A  F VPQ RER YI+ F   +  F F          +G IL     + DK  +S+KL
Sbjct: 151 IDAAGF-VPQHRERTYIVGFREEN-GFTFDDVKPIAHGNVGSILLPASQVPDKYVLSDKL 208

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           W   Q  K+ ++ AG GFGYG+    +  T TLSARY KDGSEI
Sbjct: 209 WTYLQNYKKKHEAAGNGFGYGMVDAATDHTRTLSARYGKDGSEI 252


>gi|157412142|ref|YP_001481483.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|99867167|gb|ABF67812.1| cytosine methylase [Escherichia coli APEC O1]
          Length = 489

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ +I F         F            +P L D+L+  +D K  +S KLWE  
Sbjct: 292 PQHRERIVLIGFRRDLRLKDGFTLRDIKDFYPDKRPSLSDLLDPSVDSKYILSPKLWEYL 351

Query: 62  QKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
               + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 352 YNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 393


>gi|226807724|ref|YP_002791420.1| Dcm [Enterobacter cloacae]
 gi|226810038|ref|YP_002791733.1| Dcm [Enterobacter cloacae]
 gi|226425951|gb|ACO54044.1| Dcm [Enterobacter cloacae]
 gi|226426265|gb|ACO54357.1| Dcm [Enterobacter cloacae]
          Length = 489

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ +I F         F            +P L D+L+  +D K  +S KLWE  
Sbjct: 292 PQHRERIVLIGFRRDLRLKDGFTLRDIKDFYPDKRPSLSDLLDPSVDSKYILSPKLWEYL 351

Query: 62  QKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
               + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 352 YNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 393


>gi|38347986|ref|NP_941235.1| DNA cytosine methylase [Serratia marcescens]
 gi|190410308|ref|YP_001965811.1| dcm [Klebsiella pneumoniae]
 gi|38259463|emb|CAE51691.1| DNA-cytosine methyltransferase [Serratia marcescens]
 gi|146151102|gb|ABQ02868.1| dcm [Klebsiella pneumoniae]
          Length = 475

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ +I F         F            +P L D+L+  +D K  +S KLWE  
Sbjct: 278 PQHRERIVLIGFRRDLRLKDGFTLRDIKDFYPDKRPSLSDLLDPSVDSKYILSPKLWEYL 337

Query: 62  QKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
               + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 338 YNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 379


>gi|237725529|ref|ZP_04556010.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D4]
 gi|229436216|gb|EEO46293.1| DNA (cytosine-5-)-methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 374

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 22/123 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLG-----------------IKPRLG 40
           + A  FGVPQ RERL+I+ +    V+   FKFP  +                  IK ++ 
Sbjct: 166 LNAKYFGVPQNRERLFIVAWYKDIVKATTFKFPYGIAPDGSTIYEKSKDLGDKVIKTKVS 225

Query: 41  DILEEH--IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDG 98
           DI E    ID   TIS++LW GHQ+RK+ NK  GKGFGY LF ENS  ++T+SARY+KDG
Sbjct: 226 DIFEPEDSIDSYYTISDRLWIGHQERKKRNKANGKGFGYSLFNENSVYSSTISARYWKDG 285

Query: 99  SEI 101
           SEI
Sbjct: 286 SEI 288


>gi|254251049|ref|ZP_04944367.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124893658|gb|EAY67538.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 530

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 28/118 (23%)

Query: 9   PQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEE------------------- 45
           PQ RER+ I+ F  P+       + P   GIK  + DIL +                   
Sbjct: 331 PQHRERIVIVGFREPTPFSWESLQLPEKGGIK--MKDILHKLDGSEPRLEHDGDRYFDHE 388

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              ++DK T++  LW+  Q     +K  G GFGYGL         TLSARYYKDGSEI
Sbjct: 389 KQKVNDKYTLTPNLWKYLQDYAAKHKAKGNGFGYGLVGPED-IARTLSARYYKDGSEI 445


>gi|307729019|ref|YP_003906243.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
 gi|307583554|gb|ADN56952.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
          Length = 428

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 23/115 (20%)

Query: 9   PQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDILEEH--------------------- 46
           PQ RER+ I+ F   +   F         PRL  IL +                      
Sbjct: 235 PQHRERIVIVGFRQETGFSFDDLKLPASGPRLASILHKTDGSEPLLPHDGERFFDPVRRS 294

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +  K T++  LW   Q   E ++ AG GFG+GL    S  T TLSARY+KDGSEI
Sbjct: 295 VQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGLVTPAS-VTRTLSARYHKDGSEI 348


>gi|328947602|ref|YP_004364939.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447926|gb|AEB13642.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 431

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 26/118 (22%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDILEE------------------- 45
           VPQ RER+ I+ F N  V+F       P   + +L  IL +                   
Sbjct: 233 VPQHRERIVIVGFRN-KVDFSLEDMELPPKGEVKLASILHKTDGTEPRLPQDGDKYFDFE 291

Query: 46  --HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              + DK T+++ LW   Q   + ++  G GFGYGL  EN     TLSARYYKDGSEI
Sbjct: 292 NNKVLDKYTLTDNLWAYLQAYAQKHRSMGNGFGYGLVNEND-IARTLSARYYKDGSEI 348


>gi|323525262|ref|YP_004227415.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
 gi|323382264|gb|ADX54355.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
          Length = 428

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE--------------------- 45
           PQ RER+ I+ F   +  F F         PRL  IL +                     
Sbjct: 235 PQHRERIVIVGFREET-GFSFDDLRLPANGPRLASILHKTDGSEPLLPHDGERFFDHVRR 293

Query: 46  HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   E ++ AG GFG+GL    S  T TLSARY+KDGSEI
Sbjct: 294 KVQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGLVTPAS-VTRTLSARYHKDGSEI 348


>gi|294661528|ref|YP_003579981.1| hypothetical protein KP-KP15_gp115 [Klebsiella phage KP15]
 gi|292660689|gb|ADE34937.1| hypothetical protein [Klebsiella phage KP15]
          Length = 308

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/100 (50%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           M   DFG+PQRRER++I+ F +P V F FP P     R+GDILE   +D+ TIS++ W+G
Sbjct: 144 MNTKDFGLPQRRERVFIVCFRDP-VFFSFPVPPRTPTRVGDILEPD-NDQYTISDRAWKG 201

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            ++RKE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 202 FRERKELNKANGKGFGYQAVTVDSVCTGTITAQYYKDGVQ 241


>gi|329298618|ref|ZP_08255954.1| DNA cytosine methylase [Plautia stali symbiont]
          Length = 465

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR----LGDILEEHIDDKSTI 53
           + A  F +PQ RER+ ++     +     F       + P     L  +LE     K  +
Sbjct: 269 VDARHF-LPQHRERIVLVGIRRDTGLSEGFSLRALAALYPPEVPALHSLLELQPAAKYIL 327

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATT--NTLSARYYKDGSEI 101
           S  LW    +  + +K  G GFG+GL    +      TLSARYYKDGSEI
Sbjct: 328 SPTLWHYLYQYAKKHKAKGNGFGFGLNDPRNPHCCVRTLSARYYKDGSEI 377


>gi|217980150|ref|YP_002364200.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
 gi|217508321|gb|ACK55106.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
          Length = 419

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 53/119 (44%), Gaps = 26/119 (21%)

Query: 8   VPQRRERLYIIDFLNPS-VEFKFPT---PLGIKPRLGDILEEH----------------- 46
           VPQ RER+ I+ F N   + F +     P      + DIL                    
Sbjct: 223 VPQHRERILIVGFRNEDGIRFDWDAVGLPQKGVHVMRDILHRTDGTEPVLPWDGDRFFDH 282

Query: 47  ----IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
               + DK T++ KLW   Q   + ++  G GFG+GL    S    TLSARYYKDGSEI
Sbjct: 283 AGRRVQDKYTLTPKLWRYLQDYADKHRAKGNGFGFGLVHPGS-VARTLSARYYKDGSEI 340


>gi|292488627|ref|YP_003531511.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|292899788|ref|YP_003539157.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291199636|emb|CBJ46755.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291554058|emb|CBA21160.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|312172770|emb|CBX81026.1| DNA cytosine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 469

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVEFKFPTP---------LGIKPRLGDILEEHIDDKSTIS 54
             F +PQ RER+ ++ F     + K P              +  L  +L+  ++ K  ++
Sbjct: 277 KHF-LPQHRERIILVGFRR---DLKLPAFSLSALPAWYPQQRTPLHALLDTDVEAKYILT 332

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYKDGSEI 101
             LW+      + ++  G GFGYGL      +    TLSARYYKDGSEI
Sbjct: 333 PTLWKYLYHYAKKHQARGNGFGYGLVDPALENGVVRTLSARYYKDGSEI 381


>gi|304373674|ref|YP_003858419.1| putative DNA-methyltransferase, type II restriction-modification
           system [Enterobacteria phage RB16]
 gi|299829630|gb|ADJ55423.1| putative DNA-methyltransferase, type II restriction-modification
           system [Enterobacteria phage RB16]
          Length = 302

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 67/100 (67%), Gaps = 2/100 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   DFG+PQRRER++I+ FL+  V F FP P     R+GDILE+  DD  T+S+  W+G
Sbjct: 144 LNTKDFGLPQRRERVFIVCFLDD-VFFSFPVPPRTPTRVGDILEDA-DDSYTLSDNAWKG 201

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
            ++RKE NK  GKGFGY     +S  T T++A+YYKDG +
Sbjct: 202 FRERKERNKANGKGFGYQAVTADSTHTGTITAQYYKDGVQ 241


>gi|189423370|ref|YP_001950547.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419629|gb|ACD94027.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 415

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 52/113 (46%), Gaps = 21/113 (18%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH-----------------ID 48
           VPQ RER+ I+ F      F F         P+L  IL                    + 
Sbjct: 226 VPQHRERIIIVGFR-EKTGFSFDSLQLPKEGPKLFSILHPEDGTEQEETPFTVGDKAKVH 284

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           +K  ++N LW   Q     +K AG GFG+GL  +N  T  TLSARYYKDGSEI
Sbjct: 285 EKYILTNNLWSYLQAYAAKHKAAGNGFGFGLVGKND-TARTLSARYYKDGSEI 336


>gi|170691874|ref|ZP_02883038.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
 gi|170143158|gb|EDT11322.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
          Length = 438

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 54/116 (46%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE--------------------- 45
           PQ RER+ II F + + EF F         PRL  IL +                     
Sbjct: 245 PQHRERIVIIGFRSDT-EFSFDDLRLPATGPRLASILHKTDGSEPLLPHDGERFFDHVQR 303

Query: 46  HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   + ++ AG GFG+GL    S  T TLSARY+KDGSEI
Sbjct: 304 KVQPKYTLTPNLWAYLQAYADKHRAAGNGFGFGLVTPAS-VTRTLSARYHKDGSEI 358


>gi|7636053|emb|CAB88410.1| putative methyltransferase [Serratia marcescens]
          Length = 290

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 9   PQRRERLYIIDFLNP---SVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           PQ RER+ +I F         F            +P L D+L+  +D K  +S  LWE  
Sbjct: 93  PQHRERIVLIGFRRDLRLKDGFTLRDIKDFYPDKRPSLSDLLDPSVDSKYILSPXLWEYL 152

Query: 62  QKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
               + +   G GFG+GL   +  ++ T TLS+RY KDGSEI
Sbjct: 153 YNYAKKHAAKGNGFGFGLVDPSNVNSVTRTLSSRYMKDGSEI 194


>gi|91782477|ref|YP_557683.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
 gi|91686431|gb|ABE29631.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
          Length = 418

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 25/119 (21%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE------------------ 45
           +  PQ RER+ I+ F   + EF F         PRL  IL +                  
Sbjct: 228 YFTPQHRERIVIVGFREET-EFTFDDLNVPAEGPRLASILHKTDGSEPVLAHDGDRFFDH 286

Query: 46  ---HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
               +  + T++  LW   Q     ++ AG GFG+GL   +S  T TLSARY+KDGSEI
Sbjct: 287 ASREVQPRYTLTANLWAYLQAYAAKHRAAGNGFGFGLVTPDS-VTRTLSARYFKDGSEI 344


>gi|327198092|ref|YP_004306459.1| gp47 [Burkholderia phage KL3]
 gi|310657226|gb|ADP02340.1| gp47 [Burkholderia phage KL3]
          Length = 422

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE--------------------- 45
           PQ RER+ I+ F      F +         PRL  IL +                     
Sbjct: 229 PQHRERIVIVGFRK-KTGFSWDDLRLPADGPRLASILHKTDGSEPVLPWDGERFFDHEKR 287

Query: 46  HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   E ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 288 KVQSKYTLTPNLWTYLQAYAEKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 342


>gi|261337441|ref|ZP_05965325.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
 gi|270277829|gb|EFA23683.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
          Length = 442

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 25/117 (21%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEE-------------------- 45
           VPQ RER+YI+ F +   +F +        +P L DIL +                    
Sbjct: 231 VPQHRERIYIVGFCS-KTDFTWDDLKFPDHQPILADILHKTDGTEPYLPWDGDKYFDFEH 289

Query: 46  -HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + DK T++ +LW+  Q  ++ ++  G GFGYGL       + TLSARY+KDGSEI
Sbjct: 290 QKVQDKYTLTPRLWQYLQDYRKKHEALGHGFGYGLVTP-DMVSRTLSARYHKDGSEI 345


>gi|209520785|ref|ZP_03269531.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
 gi|209498782|gb|EDZ98891.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
          Length = 432

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F   +  F +         PRLG IL                       
Sbjct: 238 PQHRERIIIVGFRGETT-FTWDDLRLPEQGPRLGAILHRKDGSEPVLPWDHDRFFDHAAR 296

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++ KLW   Q     ++ AG GFG+GL + +S  T TLSARY+KDGSEI
Sbjct: 297 RVQPKYTLTPKLWAYLQNYAAKHRAAGNGFGFGLAYPDS-VTRTLSARYHKDGSEI 351


>gi|296159065|ref|ZP_06841892.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
 gi|295890626|gb|EFG70417.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
          Length = 426

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F   +  F +         PRLG IL                       
Sbjct: 232 PQHRERIIIVGFRGET-SFSWDDLHLPENGPRLGSILHRTDGSEPVLPWDHDRFFDHTSR 290

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   E ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 291 RVQPKYTLTPNLWTYLQNYAEKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 345


>gi|119355933|ref|YP_910577.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
 gi|119353282|gb|ABL64153.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
          Length = 425

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 23/115 (20%)

Query: 8   VPQRRERLYIIDFLNP----SVEFKFPTPLGIKPRLGDILEEH----------------- 46
           VPQ RER++I  F          F  P     +P +  IL                    
Sbjct: 224 VPQHRERIFIAGFREDCGFSFDRFDLP-HGNERPVIETILHPENGMEDEEPPYTVGPLAR 282

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           I D+ T+S+ LWE  QK  E ++  G GFG+GL   +     TLSARYYKDGSEI
Sbjct: 283 ISDRYTLSDHLWEYLQKYAEKHRAKGNGFGFGLVGPHD-VARTLSARYYKDGSEI 336


>gi|149184876|ref|ZP_01863193.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
 gi|148830987|gb|EDL49421.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
          Length = 410

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 23/121 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDILEEH----------- 46
           + A  F +PQ RER+ ++ F      F +     P+  + R+  +L              
Sbjct: 216 LNARHF-LPQNRERIVLVGFR-EKSGFDWADLKLPVEGEARMRSVLHPENGSEIAESHYT 273

Query: 47  ------IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
                 +  K T+SN LW+  +     ++ AG GFGYGL   +  T  TLSARYYKDGSE
Sbjct: 274 EGELATVSAKYTLSNHLWKYLRDYSAKHRAAGNGFGYGLVGPDD-TCRTLSARYYKDGSE 332

Query: 101 I 101
           I
Sbjct: 333 I 333


>gi|118576810|ref|YP_876553.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118195331|gb|ABK78249.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 325

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           VPQ RERL+I+ F +  VEF+FP     KPRL DILE     +  ++  +W   ++ KE 
Sbjct: 159 VPQHRERLFIVGF-DREVEFEFPKMKNAKPRLRDILEPDPGSEYVLTPGVWAALKRHKEA 217

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  G GFGYG+       T TLS RYYKDGSEI
Sbjct: 218 CRARGAGFGYGIADP-DGVTRTLSRRYYKDGSEI 250


>gi|226942156|ref|YP_002797230.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|226717083|gb|ACO76221.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
          Length = 420

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 54/117 (46%), Gaps = 26/117 (22%)

Query: 9   PQRRERLYIIDFLNPSVEFKF---PTPLGIKPRLGDILEEH------------------- 46
           PQ RER+ I  F  P V F +   P P      L  +L                      
Sbjct: 231 PQHRERILIAGFREP-VAFDWDAIPLPPKGSRTLRTVLHRTDGSEPVLPWDGDRFFDHQA 289

Query: 47  --IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + DK T++ KLW+  Q   E ++  G GFG+GL   +S  T TLSARYYKDGSEI
Sbjct: 290 RCVQDKYTLTPKLWDYLQAYAEKHRAKGNGFGFGLVGPDS-VTRTLSARYYKDGSEI 345


>gi|295675907|ref|YP_003604431.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
 gi|295435750|gb|ADG14920.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
          Length = 430

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F      F +         PRLG IL                       
Sbjct: 236 PQHRERIIIVGFR-GKTAFTWDDLRLPDEGPRLGAILHRTDGTEPVLPWDHDRFFDHATR 294

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++ KLW   Q     ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 295 RVQPKYTLTPKLWAYLQNYAAKHRAAGNGFGFGMAYPDS-VTRTLSARYHKDGSEI 349


>gi|114571596|ref|YP_758276.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
 gi|114342058|gb|ABI67338.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
          Length = 406

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 10/102 (9%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFP------TPLGIKPRLGDILEEH--IDDKSTISNKLWE 59
           VPQ+RER++I+ F + S +F F             P L  IL+ H  I  K T++ KLW+
Sbjct: 228 VPQKRERVFIVGFRD-STDFSFEGFERLIPHASNHPTLDSILQSHNEIGQKYTLTEKLWD 286

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             Q  ++ ++  G GFGY LF  +     TLSARY+KDGSEI
Sbjct: 287 YLQAYRQKHESKGNGFGYSLFGPDD-VARTLSARYHKDGSEI 327


>gi|320331203|gb|EFW87160.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882725|gb|EGH16874.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 420

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F      F +         PRL  IL +                     
Sbjct: 228 PQHRERIIIVGFR-EKTGFSWDDLRLPTDGPRLASILHKTDGTERVLPWDEDRFFDHKKR 286

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   E ++ AG GFG+G+ F +S  T TLSARY+KDGSEI
Sbjct: 287 VVQPKYTLTPNLWAYLQAYAEKHRAAGNGFGFGMAFPDS-VTRTLSARYHKDGSEI 341


>gi|85709931|ref|ZP_01040996.1| Type II restriction-modification system methylation subunit
           [Erythrobacter sp. NAP1]
 gi|85688641|gb|EAQ28645.1| Type II restriction-modification system methylation subunit
           [Erythrobacter sp. NAP1]
          Length = 370

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-------FKFPTPLGIKPRLGDILEEHID---DK 50
           + A +FGVPQ+RER+YI+ F             F      G   RLGD LE        +
Sbjct: 184 LAATEFGVPQKRERVYIVGFDRDHFGNIDANDVFAQLERGGHPTRLGDALEPEGANSLAR 243

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            TIS+KLW G  +R   ++  G GFG+ +F  +    NT+++RYYKDG EI
Sbjct: 244 YTISDKLWSGLIRRMARHEAKGNGFGHKVFNYDDPYCNTITSRYYKDGREI 294


>gi|260909972|ref|ZP_05916659.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635922|gb|EEX53925.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 370

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 20/121 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGI----------------KPRLGD 41
           + A  FGVPQ RERL+II +    V+   FKFP  + I                  ++ +
Sbjct: 166 LNAKYFGVPQNRERLFIIAWNRELVDVDCFKFPYGIAIDGTSIYEKRKLKGRTIPTKVSE 225

Query: 42  ILEEH-IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           I E   +    TI++++WEGH+ RKE NK+ GKGFGY LF  NS  T+T+SARY+KDGSE
Sbjct: 226 IFEPDNVTTPFTITDRMWEGHKTRKERNKMNGKGFGYSLFNANSEYTSTISARYWKDGSE 285

Query: 101 I 101
           I
Sbjct: 286 I 286


>gi|187923141|ref|YP_001894783.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714335|gb|ACD15559.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 426

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F      F +         PRLG IL                       
Sbjct: 232 PQHRERIIIVGFR-GKTAFSWDDLRLPQDGPRLGSILHRTDGSEPVLPWDHDRFFDHAGR 290

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  K T++  LW   Q   E ++ AG GFG+G+ +  S  T TLSARY+KDGSEI
Sbjct: 291 RVQPKYTLTPNLWTYLQNYAEKHRAAGNGFGFGMAYPTS-VTRTLSARYHKDGSEI 345


>gi|186476891|ref|YP_001858361.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
 gi|184193350|gb|ACC71315.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
          Length = 428

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE--------------------- 45
           PQ RER+ +I F   +  F +         PRL  IL                       
Sbjct: 237 PQHRERIIMIGFRART-SFSWDDLRLPEEGPRLASILHRTDGTEPVLPWDGDRFFDHAAR 295

Query: 46  HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           H+  K T++ KLW   Q   + ++ AG GFGYG+ +  S  T TLSARY+KDGSEI
Sbjct: 296 HVQPKYTLTPKLWTYLQNYADKHRAAGNGFGYGMAYPQS-VTRTLSARYHKDGSEI 350


>gi|149926993|ref|ZP_01915251.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
 gi|149824214|gb|EDM83434.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
          Length = 435

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 54/117 (46%), Gaps = 26/117 (22%)

Query: 9   PQRRERLYIIDFLNPSVEFKF---PTPLGIKPRLGDILEE-------------------- 45
           PQ RER+ I  F +  V F +   P P     +L +IL +                    
Sbjct: 245 PQHRERILIAGFADQ-VAFDWDAIPLPPKGSRKLKEILHKTDGSEPYLPWDENRFFDHDS 303

Query: 46  -HIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
             + DK T++  LW   Q     +K  G GFG+GL    S TT TLSARYYKDGSEI
Sbjct: 304 KKVQDKYTLTPGLWTYLQNYAAKHKAKGNGFGFGLVGPES-TTRTLSARYYKDGSEI 359


>gi|254429380|ref|ZP_05043087.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
 gi|196195549|gb|EDX90508.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
          Length = 435

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 26/118 (22%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPL---GIKPRLGDILEEH------------------ 46
           VPQ RER+ I+ F  P   F +         + R+ ++L                     
Sbjct: 244 VPQHRERIAIVGFREPMP-FSWDAMKMAGKGEKRMREVLHREDGSEPYLEWDGDRFFDHG 302

Query: 47  ---IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              +++K  ++ KLW+  +  K  ++  G GFG+GL   +S    TLSARYYKDGSEI
Sbjct: 303 KGEVNEKYILTPKLWKYLKDYKAKHQAKGNGFGFGLVGPDS-VARTLSARYYKDGSEI 359


>gi|238898088|ref|YP_002923769.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465848|gb|ACQ67622.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 401

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 25/116 (21%)

Query: 9   PQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH-------------------- 46
           PQ RER+ I+ F      F +         PRL  IL                       
Sbjct: 208 PQHRERIIIVGFR-EKTGFSWDDLKLPEEGPRLASILHRTDGTEPVLPWDGERFFDHDRR 266

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
            +  + T++  LW   Q   + ++ AG GFG+G+ + +S  T TLSARY+KDGSEI
Sbjct: 267 AVPLRYTLTPNLWAYLQAYADKHRAAGNGFGFGIVYPDS-VTRTLSARYHKDGSEI 321


>gi|121997219|ref|YP_001002006.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
 gi|121588624|gb|ABM61204.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
          Length = 436

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 24/115 (20%)

Query: 8   VPQRRERLYIIDFLNPS----VEFKFPTPLGIKPRLGDILEEH----------------- 46
           VPQ RER+Y++ F   +     +  FP P      L ++L                    
Sbjct: 241 VPQHRERIYMVGFRKDTPFTWNQLDFPAPDAR--TLREVLHPEDGSEAAEPPYTEGDLAT 298

Query: 47  IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           + DK  +S KLW+  Q  +  ++ AG GFGY        T  TLSARY+KDGSEI
Sbjct: 299 VGDKYVLSEKLWKYLQDYRAKHEHAGNGFGYSKVGPED-TARTLSARYHKDGSEI 352


>gi|54293106|ref|YP_125521.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
 gi|53752938|emb|CAH14374.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
          Length = 417

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 8   VPQRRERLYIIDFLNPSV----EFKFPTPLG------IKPRLGDILEE---------HID 48
           VPQ RER++I+ F         + + P          + P  G  +EE          + 
Sbjct: 226 VPQHRERIFIVGFREDLPFSWNDLRLPPKNSVLLESILHPENGTEIEEKPYTFGEKAEVS 285

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
              T+S+KLW   Q  K+ +   G GFG+GL  E +    TLSARY+KDGSEI
Sbjct: 286 SCFTLSDKLWNYLQDYKKKHSEKGNGFGFGLVSEKN-IARTLSARYHKDGSEI 337


>gi|254526757|ref|ZP_05138809.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
           9202]
 gi|221538181|gb|EEE40634.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
           9202]
          Length = 298

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 24/122 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL----GIKPRLGDILEEH---------- 46
           + A  F VPQ R+R+YI+ F   +  F F   +       P L  +L             
Sbjct: 99  INAKSF-VPQNRQRIYIVGFREEN-NFNFDDLIIPDISKGPTLSSVLHPEDGSENFEDPY 156

Query: 47  -------IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
                  +++K TI+NKLW+  +  ++ ++  G GFG+GL         TLSARY+KDG+
Sbjct: 157 TIPHLSKVNEKYTITNKLWDYLKMYEKKHRAKGNGFGFGLCKRED-VARTLSARYHKDGA 215

Query: 100 EI 101
           EI
Sbjct: 216 EI 217


>gi|228469904|ref|ZP_04054843.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
 gi|228308539|gb|EEK17327.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
          Length = 395

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 21/122 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFP----------------TPLGIKPRLGD 41
           + A  FGVPQ RERL+I+ +    +    F FP                    I+ ++ D
Sbjct: 188 LNAKYFGVPQNRERLFIVAWSKDLISADRFLFPYGIDAEGNTIYDKQMAKRCAIRTKVSD 247

Query: 42  ILEEHIDDK--STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
           I E    ++   TIS+++W GHQ RK+ N++ GKGFGY  F  NS  T+T+SARY+KDGS
Sbjct: 248 IFEPQSIERDGFTISDRMWLGHQTRKKRNRLNGKGFGYSKFTGNSVYTSTISARYWKDGS 307

Query: 100 EI 101
           EI
Sbjct: 308 EI 309


>gi|126464142|ref|YP_001045255.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105953|gb|ABN78483.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 417

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 24/123 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEF-KFPTPLGIK-PRLGDILEEH--------- 46
           + A  F VPQ RER++I+         ++  K   P G+  PR G +L +          
Sbjct: 216 IDARCF-VPQHRERIFIVGVRKDLDMKIDLSKLVLPSGVTGPRFGTVLHKEDGSELPNNR 274

Query: 47  --------IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDG 98
                   + D+ T+S+KLW+  Q   E ++  G GFG+GL         TLSARY+KDG
Sbjct: 275 SFLDPEGRVSDRYTLSDKLWKYLQDYAEKHRQKGNGFGFGL-TRRGDVARTLSARYHKDG 333

Query: 99  SEI 101
           SEI
Sbjct: 334 SEI 336


>gi|320156908|ref|YP_004189287.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319932220|gb|ADV87084.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 14/107 (13%)

Query: 9   PQRRERLYIIDFLNPSVEFKFP---------TPLGIKPRLGDIL---EEHIDDKSTISNK 56
           PQ RER+ ++      VE                  + R+ DIL    E    K T++  
Sbjct: 311 PQHRERIVLVGVRKDLVEKNPEYKKLSLKNIEVPQERLRVSDILTDLSEEETKKYTLTPN 370

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
           LW         ++  G GFG+GL   ++    T TLSARYYKDGSEI
Sbjct: 371 LWNYLYHYALKHQSKGNGFGFGLVDPSNPNAVTRTLSARYYKDGSEI 417


>gi|46581246|ref|YP_012054.1| type II DNA modification methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450667|gb|AAS97314.1| type II DNA modification methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234912|gb|ADP87766.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 358

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 16/116 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-----------EFKF--PTPLGIKPRLGDILEEHI 47
           + A D+ +PQ RER++++ F  P             +F F   +  G +  L  ++E  +
Sbjct: 166 IDARDW-IPQHRERIFMVGFRLPEACPAGAQKWDVKDFDFGKVSRRGSQKDLESVIEPDV 224

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTLSARYYKDGSEI 101
            +K T+    W    + K N+   G+GFGYG+     A  TT TLSARY+KDG+EI
Sbjct: 225 PEKYTLGPGTWNTLVRHKANHAAKGQGFGYGMITPPFAGQTTRTLSARYHKDGAEI 280


>gi|332188292|ref|ZP_08390019.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
 gi|332011688|gb|EGI53766.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
          Length = 423

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD-------------------------- 41
           VPQ R+R+ ++ F    V F +   L   P + D                          
Sbjct: 229 VPQHRQRILLVGF-QKDVGFDWEKVLAKMPAVADGPKLASILHREDGTEEEGEDDDRRFI 287

Query: 42  ILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
           + +  +  K  ++++LW+  Q   E ++ AG GFG  +      T+ TLSARYYKDGSEI
Sbjct: 288 LADGKVQKKYVLTDRLWQYLQGYAEKHRQAGNGFGCSVVGPKD-TSRTLSARYYKDGSEI 346


>gi|261252209|ref|ZP_05944782.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935600|gb|EEX91589.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
          Length = 584

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 8   VPQRRERLYIIDFLNP------SVEFKFPTPLGIKPRLGDIL---EEHIDDKSTISNKLW 58
           +PQ RER+ ++            +          +  L DIL    +    K T++  LW
Sbjct: 307 LPQHRERVVLVGVRKDLTIDKSKLSLNNIQKPTERVPLKDILCELSDEDSSKYTLTPNLW 366

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN--SATTNTLSARYYKDGSEI 101
                    ++  G GFG+GL   +  +  T TLSARY+KDGSEI
Sbjct: 367 NYLYNYALKHQTQGNGFGFGLVDPSNINTVTRTLSARYHKDGSEI 411


>gi|225076313|ref|ZP_03719512.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
 gi|224952437|gb|EEG33646.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
          Length = 359

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +F++P P+G+K    DI E+  +  K  +S   
Sbjct: 181 INAKDFGVPQNRERIFIVGFHPDTKVNDFEYPKPIGLKTSFSDIREKETVPTKYYLSTVY 240

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K KE ++  G GFGY +   +    N +
Sbjct: 241 IDTLRKHKERHEAKGNGFGYEII-PDDGIANAI 272


>gi|169786848|ref|YP_001700742.1| modification methylase (cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter baumannii
           SDF]
 gi|169150765|emb|CAP02959.1| modification methylase (Cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter
           baumannii]
          Length = 366

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +F++PTP G K    D+ EE+ +  K  +SN+ 
Sbjct: 186 INAKDFGVPQNRERIFIVGFHKDTGVHDFEYPTPTGKKVCFADVKEENVVPTKYYLSNQY 245

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  ++ K +++  G GFGY +   +++  N +
Sbjct: 246 LQTLERHKAHHESKGNGFGYAII-PDNSIANAI 277


>gi|261400408|ref|ZP_05986533.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209852|gb|EEZ76307.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 362

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +FK+P P GI+    DI E+  +  K  +S + 
Sbjct: 180 VNAKDFGVPQNRERIFIVGFRGDTDIKDFKYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 239

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K K+ ++  G GFGY +   +    N +
Sbjct: 240 IDTLRKHKQRHEEKGNGFGYEIIS-DDGIANAI 271


>gi|313668796|ref|YP_004049080.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica ST-640]
 gi|313006258|emb|CBN87720.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica 020-06]
          Length = 362

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +   +FK+P P GI+    DI E+  +  K  +S + 
Sbjct: 180 VNAKDFGVPQNRERIFIVGFRGDTDIKDFKYPEPTGIQTAFQDIREKDTVPTKYYLSTQY 239

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K K+ ++  G GFGY +   +    N +
Sbjct: 240 IDTLRKHKQRHEEKGNGFGYEIIS-DDGIANAI 271


>gi|330960632|gb|EGH60892.1| DNA cytosine methylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 178

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 19  DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYG 78
            F    +E   P     +P  GD+L++ +D K  ++  LW+   +  E ++  G GFG+G
Sbjct: 4   GFTLRDIEKLIPKQ---RPSFGDLLDKEVDSKYILTPNLWDYLYRYAEKHRQKGNGFGFG 60

Query: 79  LFFENSATTNTLSARYYKDGSEI 101
           L   N     TLSARY+KDGSEI
Sbjct: 61  LTRPND-IARTLSARYHKDGSEI 82


>gi|159027151|emb|CAO86782.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + A  FGVPQ R R++I+ F        F +P P   +  L DILEE  +  K  +SN+ 
Sbjct: 145 LNARYFGVPQNRPRIFIVGFREDLNIYHFSYPQPTHPETCLKDILEEKEVSVKYYLSNQY 204

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
            E   K K  ++  G GFGY +   +
Sbjct: 205 LETLFKHKARHENKGNGFGYEIISPD 230


>gi|167854713|ref|ZP_02477492.1| cell division protein MukB [Haemophilus parasuis 29755]
 gi|167854127|gb|EDS25362.1| cell division protein MukB [Haemophilus parasuis 29755]
          Length = 361

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F        F +P PL  K    D+ E++ +  K  +S + 
Sbjct: 181 LNAKDFGVPQNRERIFIVGFRQDLAINSFYYPAPLNRKVCFNDVKEKNVVPTKYYLSTQY 240

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            E  +K K  ++  G GFGY +   +    N +
Sbjct: 241 IETLRKHKARHQDKGNGFGYEII-PDDGIANAI 272


>gi|169334482|ref|ZP_02861675.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259199|gb|EDS73165.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis DSM
           17244]
          Length = 337

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N     +F FPTP+    ++ DI+EE  +  K  +S+  
Sbjct: 156 LNSRNFGVPQNRERIYIVAFRNDIAPKDFIFPTPIDENKKIKDIMEEKPVSPKYYLSDVY 215

Query: 58  WEGHQKRKENNKIAGKGFGYGLFF 81
            E  +K K  ++  G GFGY +  
Sbjct: 216 LETLRKHKARHEAKGNGFGYEIRD 239


>gi|219870523|ref|YP_002474898.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219690727|gb|ACL31950.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 350

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F        F +P PL  K    D+ E++ +  K  +S + 
Sbjct: 170 LNAKDFGVPQNRERIFIVGFRQDLAINSFYYPAPLNRKVCFNDVKEKNVVPTKYYLSTQY 229

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            E  +K K  ++  G GFGY +   +    N +
Sbjct: 230 IETLRKHKARHQDKGNGFGYEII-PDDGIANAI 261


>gi|27497145|gb|AAO17336.1| methylase [Neisseria lactamica]
          Length = 384

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +    F++P P GI+    DI E+  +  K  +S + 
Sbjct: 202 VNAKDFGVPQNRERIFIVGFRGDTDIKYFEYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 261

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K K+ ++  G GFGY +   +    N +
Sbjct: 262 IDTLRKHKQRHEEKGNGFGYEIIS-DDGIANAI 293


>gi|213053049|ref|ZP_03345927.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 169

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 33  LGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTL 90
              +P L ++LE  ++ K  ++  LW+   +  + ++  G GFGYG+ + ++      TL
Sbjct: 1   PPRRPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTL 60

Query: 91  SARYYKDGSEI 101
           SARYYKDG+EI
Sbjct: 61  SARYYKDGAEI 71


>gi|213027601|ref|ZP_03342048.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 176

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 33  LGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSA--TTNTL 90
              +P L ++LE  ++ K  ++  LW+   +  + ++  G GFGYG+ + ++      TL
Sbjct: 8   PPRRPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPDNPESVARTL 67

Query: 91  SARYYKDGSEI 101
           SARYYKDG+EI
Sbjct: 68  SARYYKDGAEI 78


>gi|166368121|ref|YP_001660394.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
 gi|166090494|dbj|BAG05202.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
           NIES-843]
          Length = 347

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + A  FGVPQ R R++I+ F        F +P P   +  L DILEE  +  K  +SN+ 
Sbjct: 145 LNARYFGVPQNRPRIFIVGFREDLNIYHFSYPQPTHQETCLKDILEEKEVSVKYYLSNQY 204

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
            E   K K  ++  G GFGY +   +
Sbjct: 205 LETLFKHKARHQHKGNGFGYEIISTD 230


>gi|309378773|emb|CBX22599.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 342

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A DFGVPQ RER++I+ F   +    F++P P GI+    DI E+  +  K  +S + 
Sbjct: 160 VNAKDFGVPQNRERIFIVGFRGDTDIKYFEYPEPTGIQTAFRDIREKDTVPTKYYLSTQY 219

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K K+ ++  G GFGY +   +    N +
Sbjct: 220 IDTLRKHKQRHEEKGNGFGYEIIS-DDGIANAI 251


>gi|290969050|ref|ZP_06560585.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781006|gb|EFD93599.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
          Length = 333

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + + DFGVPQ RER+YI+ F        F+FP        + DI+EE     K  +S+  
Sbjct: 147 LNSKDFGVPQNRERIYIVAFREDIAPNTFRFPEKTDDTKVIADIMEEKEPSSKYYLSDVY 206

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS 84
               +K K+ ++  G GFGY +   +S
Sbjct: 207 LASLRKHKQRHQAKGNGFGYEIRGVHS 233


>gi|127459|sp|P15446|MTH2_HAEPA RecName: Full=Modification methylase HpaII; Short=M.HpaII; AltName:
           Full=Cytosine-specific methyltransferase HpaII
 gi|43630|emb|CAA35705.1| unnamed protein product [Haemophilus parainfluenzae]
 gi|305377|gb|AAA20481.1| HpaII modification methyltransferase [Haemophilus parainfluenzae]
          Length = 358

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A +FGVPQ RER+YI+ F   +    F +P PL       DI EE  +  K  +S + 
Sbjct: 176 VNAKNFGVPQNRERIYIVGFHKSTGVNSFSYPEPLDKIVTFADIREEKTVPTKYYLSTQY 235

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +  +K KE ++  G GFGY +   +    N +
Sbjct: 236 IDTLRKHKERHESKGNGFGYEII-PDDGIANAI 267


>gi|167751356|ref|ZP_02423483.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
 gi|167655602|gb|EDR99731.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
          Length = 475

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N     +F+FP       R+ DI+EE+ +  K  +S+  
Sbjct: 294 LNSKNFGVPQNRERIYIVAFRNDIAPEKFEFPQGNDDTKRIKDIIEENPVPAKYYLSDVY 353

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS 84
            E  ++ K  ++  G GFGY +     
Sbjct: 354 LETLRRHKARHESKGNGFGYEVRGMED 380


>gi|149369548|ref|ZP_01889400.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
 gi|149356975|gb|EDM45530.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
          Length = 421

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + A  FGVPQ RER++I+ F        FK+P P   +  L +ILE E +  K  +S   
Sbjct: 241 LNAKKFGVPQNRERIFIVGFRKDLGINNFKYPEPTDTEAILENILEAEEVSVKYYLSEVY 300

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTN 88
            +  +  +  ++  G GFGY +   N+ T N
Sbjct: 301 LQTLRNHRARHESKGNGFGYEII-PNNGTAN 330


>gi|300813374|ref|ZP_07093725.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512517|gb|EFK39666.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 347

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + + DFGVPQ RER+YI+ F       +F FP        + DI+EE     K  +S+  
Sbjct: 147 INSKDFGVPQNRERIYIVAFREDISPNKFIFPEETDDTKVIADIMEEKETSPKYYLSDVY 206

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS 84
            E  +K K+ +K  G GFGY +   NS
Sbjct: 207 LESLRKHKQRHKAKGNGFGYEIRDVNS 233


>gi|313892290|ref|ZP_07825883.1| modification methylase HpaII [Dialister microaerophilus UPII 345-E]
 gi|313119428|gb|EFR42627.1| modification methylase HpaII [Dialister microaerophilus UPII 345-E]
          Length = 329

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N      F FP     +  L DI+E E +  +  +S   
Sbjct: 147 LNSKNFGVPQNRERIYIVAFRNDISPENFDFPEGTDTEKTLKDIIEKEEVSSRYYLSETY 206

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENS 84
                K KE  K  G GFGY +   +S
Sbjct: 207 LNSLIKHKERQKAKGNGFGYEIRQMDS 233


>gi|327403407|ref|YP_004344245.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327318915|gb|AEA43407.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
          Length = 422

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           M A +FGVPQ RER++I+ F        F++P P+       D+ EE  +  K  +S   
Sbjct: 241 MNAKNFGVPQNRERIFIVGFRKDLNIDSFEYPLPVSKSVTFQDVREEKEVSVKYYLSETY 300

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTN 88
                K KE +   G GFG+ +   +    N
Sbjct: 301 LNTLVKHKERHASKGNGFGFEII-PDDGIAN 330


>gi|326798326|ref|YP_004316145.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
 gi|326549090|gb|ADZ77475.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
          Length = 409

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL-EEHIDDKSTISNKL 57
           + A +FGVPQ RER++I+ +        F++P PL     + DI  EE +  K  +S + 
Sbjct: 229 VNAKNFGVPQNRERIFIVGYRKDLGIDRFEYPEPLDEPVAIEDIFEEEEVSVKYYLSTQY 288

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTN 88
            +  ++ K  ++  G GFG+ +   N    N
Sbjct: 289 LKTLKEHKARHESKGNGFGFEII-PNDGIAN 318


>gi|154484133|ref|ZP_02026581.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
           27560]
 gi|149735175|gb|EDM51061.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
           27560]
          Length = 366

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + + DFGVPQ RER+YI+ F     S  F+FP        + DI+EE  +  K  +S   
Sbjct: 164 LNSKDFGVPQNRERIYIVAFRKDINSENFEFPVGNKPDTCIRDIMEEQEVSVKYYLSTTY 223

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
            E  ++ K  +   G GFGY +   +
Sbjct: 224 IETLKRHKARHAAKGNGFGYEIRDLD 249


>gi|150026305|ref|YP_001297131.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772846|emb|CAL44330.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKL 57
           + A +FGVPQ RER+YI+ F        F++P PL   P    + E+ +   K  +S + 
Sbjct: 239 VNAKNFGVPQNRERIYIVGFRQDLNISSFEYPEPLENNPTFESVKEKLVPPTKYYLSTQY 298

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +     K  +   G GFGY +   ++   N +
Sbjct: 299 VQTLINHKARHASKGNGFGYAII-PDNGIANAI 330


>gi|291530358|emb|CBK95943.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 696

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + + +FGVPQ RER+YI+ F N      F FP        L DI E + +  K  +S+  
Sbjct: 154 LNSKNFGVPQNRERIYIVAFRNDIAPDNFDFPESTDTNKCLLDIRERNPVPAKYYLSDVY 213

Query: 58  WEGHQKRKENNKIAGKGFGYGL 79
            +  +K K  ++  G GFGY +
Sbjct: 214 VDTLRKHKARHEAKGNGFGYEI 235


>gi|292670064|ref|ZP_06603490.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
 gi|292648252|gb|EFF66224.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
          Length = 377

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKL 57
           + + DFGVPQ RER+YI+ F N   S  F FP        + DI+E E +  K  +S   
Sbjct: 181 LNSKDFGVPQNRERIYIVAFRNDIDSTGFAFPEGHDSNTTIRDIMEAEEVSVKYYLSTVY 240

Query: 58  WEGHQKRKENNKIAGKGFGY 77
               ++ K +++  G GFGY
Sbjct: 241 LASLRRHKAHHEALGHGFGY 260


>gi|282859944|ref|ZP_06269032.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587347|gb|EFB92564.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 448

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           + A +FGVPQ RER+YI+ F        F +P P        DI E   +  K  +S   
Sbjct: 258 LNAANFGVPQHRERVYIVGFRKDLNIKAFNYPMPTDNSKTFADIKEATTVSSKYYLSTTY 317

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTL 90
            +     K  +   G GFGY +   ++   N +
Sbjct: 318 LDTLIAHKARHAAKGHGFGYEIIS-DTGIANAI 349


>gi|313674544|ref|YP_004052540.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941242|gb|ADR20432.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 420

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKL 57
           + A D+GVPQ+RER++I+ F        F++P P        D+ EE  +  K  +SN  
Sbjct: 242 INAKDYGVPQKRERIFIVGFRKDLKIETFEYPEPSKSPVSFEDVKEEEPVSVKYYLSNTY 301

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
               +K K  +   G GFGY +  ++
Sbjct: 302 LNTLKKHKARHLGKGNGFGYAVIADD 327


>gi|255514225|gb|EET90487.1| DNA-cytosine methyltransferase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 328

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL---------GIKPRLGD----ILEEHI 47
           + A ++GVPQ+R+R++ I       E     P+         G+KP +      +  + +
Sbjct: 156 LNAANYGVPQKRQRIFFIGVNRRQAEKAILPPVPTHSEHPTNGLKPWVPSKQFLLPPQKV 215

Query: 48  DDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
             +   S ++  G  +RK+ N     GFG+  F + S  +NT+SARY+KDG+E
Sbjct: 216 SKRFYYSERMINGFIRRKKKNAERNIGFGWQ-FLDFSKPSNTISARYWKDGAE 267


>gi|49476998|ref|YP_035184.1| modification methylase HpaII (cytosine-specific methyltransferase
           HpaII) [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328554|gb|AAT59200.1| modification methylase HpaII (Cytosine-specific methyltransferase
           HpaII) [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 373

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--------FKFPTPLGIKP---RLGDILEEHIDD 49
           + + +FGVPQ R R+YI+ F              F  P     K     + D+LE+++ +
Sbjct: 164 LNSRNFGVPQNRPRIYIVGFNQRLYRDKIESMPLFTLPKSRSRKKIYDSVRDVLEDNVGE 223

Query: 50  KSTISNKLWEGHQKRKENNKIAGKGFGYGLFFE---NSATTNTLSA 92
           K  +S    E  +K KE     G GFGY +       +  +N L A
Sbjct: 224 KYYLSEGYLETLKKHKEAQGKKGNGFGYSIVNLPEIENPVSNALLA 269


>gi|254282099|ref|ZP_04957067.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
 gi|219678302|gb|EED34651.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
          Length = 356

 Score = 96.5 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   VPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           V QRR R +++   N        F+FP        L  +L +  D K T+S+K+W GH+ 
Sbjct: 192 VAQRRVRCFMVAVRNDIAANRGAFEFPKFPEGSIPLRSVLSKEPDPKYTLSDKMWAGHKA 251

Query: 64  RKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           R   N   G GF   L       +NT+ ARY KD  E
Sbjct: 252 RTIRNVERGTGFT-ALEANLDKPSNTIVARYGKDAKE 287


>gi|113971536|ref|YP_735329.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
 gi|113886220|gb|ABI40272.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
          Length = 417

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 8   VPQRRERLYIIDFLNP----SVEFKFPTPLGIKPRLGDILEE---HIDDKSTISNKLWEG 60
           V QRR R +++            FKFP   G    L D LEE    + ++ TIS++LWEG
Sbjct: 254 VAQRRVRCFMVCVREDVFQEFGAFKFPEFEGEPIPLRDALEELTAELMEEYTISDRLWEG 313

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSE 100
           H  R + N   G GF   +   N   +NT+ ARY KDG E
Sbjct: 314 HINRTQRNLDRGTGFTAHVADLNRP-SNTIVARYGKDGKE 352


>gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 272

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           A DFGVPQ RER+YI+ F    V     F FPTPL  K R+GDILE+ +D+K T+S+
Sbjct: 215 AKDFGVPQNRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSD 271


>gi|238917714|ref|YP_002931231.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238873074|gb|ACR72784.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 311

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + + D+GVPQ R R YI+ F N +  F+FP    +   L D+LE  +DDK  +S+++   
Sbjct: 148 LNSADYGVPQTRNRTYIVCFDNQNARFEFPEKKKLNKTLQDLLEPEVDDKYFLSDRILPT 207

Query: 61  HQK-----RKENNKI 70
                    K  ++I
Sbjct: 208 ILSDGTGGYKAKSEI 222


>gi|119493789|ref|ZP_01624358.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
 gi|119452484|gb|EAW33671.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
          Length = 689

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID-DKSTISNKLWE 59
           + A DFG+PQ+RER YI+ FL  ++ F FP P+  +  L +ILE     DKS  +++  +
Sbjct: 150 LNALDFGLPQKRERTYIVGFL-ENIHFSFPKPIQKRVSLSEILEPDEQVDKSLFASEFIQ 208

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSA 85
               +K   ++  K F   ++ EN +
Sbjct: 209 ----KKRIQRLKVKPFYPSIWHENKS 230


>gi|237742049|ref|ZP_04572530.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
 gi|229429697|gb|EEO39909.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
          Length = 385

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLG------DILEEHIDDKSTI 53
           A DFG+PQRR R YII F         F        +  L       D+LE   D K  +
Sbjct: 170 AKDFGIPQRRLRTYIIGFRKDLLQDNNFILEPLPKNRTDLKIYKNLNDLLEFQNDIKYYV 229

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFEN---SATTNTLSA 92
           ++   +  ++ K  + + G GFG+ +       +   NT+ A
Sbjct: 230 ASGYLKTLERHKLKHSLKGNGFGFEVVNAPNIKNPIANTILA 271


>gi|288559284|ref|YP_003422770.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288541994|gb|ADC45878.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 339

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK--STISNKLW 58
           + + D+GVPQ RER++I+ F +    FKFP P   K  + D+LE+++ D   S I++   
Sbjct: 170 LNSKDYGVPQNRERIFIVGFKDNVNTFKFPLPFENKANINDLLEKNVKDHELSGIASDHL 229

Query: 59  EGHQKRKENNKIAGKGF 75
           + H +    NK   K +
Sbjct: 230 KKHYEEFLKNKKVNKNY 246


>gi|296114006|ref|YP_003627944.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
 gi|295921700|gb|ADG62051.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
          Length = 410

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + D+G+PQ RER+++I F N P   F+FP P+ ++  + D LE++ D K  +  K  +
Sbjct: 182 LNSKDYGIPQHRERIFVIGFKNKPKNGFEFPQPIELEYTMQDFLEDYTDSKYFLKEKGIK 241

Query: 60  GHQKRKENNK 69
                K   K
Sbjct: 242 FVTSSKNRQK 251


>gi|326573696|gb|EGE23654.1| DNA-cytosine methyltransferase [Moraxella catarrhalis O35E]
          Length = 408

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + D+G+PQ RER+++I F N P   F+FP P+ ++  + D LE++ D K  +  K  +
Sbjct: 180 LNSKDYGIPQHRERIFVIGFKNKPKNGFEFPQPIELEYTMQDFLEDYTDSKYFLKEKGIK 239

Query: 60  GHQKRKENNK 69
                K   K
Sbjct: 240 FVTSSKNRQK 249


>gi|282879499|ref|ZP_06288233.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306646|gb|EFA98672.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 438

 Score = 86.1 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE- 59
           + + D+G+PQ RER++ I F  P V+F FP P+ ++ ++ D LE+++D K  +  K  + 
Sbjct: 208 LNSKDYGIPQHRERIFCIGFHTP-VKFAFPAPIPLEYKMYDFLEDYVDTKYFLKEKGIKF 266

Query: 60  --GHQKRKEN 67
              H+   + 
Sbjct: 267 VTSHKNHTKC 276


>gi|167746073|ref|ZP_02418200.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
 gi|167654588|gb|EDR98717.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
          Length = 312

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           +   D+G+PQ R R YI+ F N + EF+FP    +   L D+LE  +DDK  +S ++   
Sbjct: 148 LNTADYGIPQTRNRTYIVCFANDNAEFEFPDKQELNLTLQDLLETEVDDKYFLSERILPT 207

Query: 61  HQK-----RKENNKI 70
                    K  ++I
Sbjct: 208 ILSDGTGGYKAKSEI 222


>gi|255279955|ref|ZP_05344510.1| modification methylase EcoRII [Bryantella formatexigens DSM 14469]
 gi|255269728|gb|EET62933.1| modification methylase EcoRII [Bryantella formatexigens DSM 14469]
          Length = 311

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + + DFGVPQ R R Y++ F N   EF FP    ++  L D+LE+ + +K  +S ++ 
Sbjct: 148 LNSADFGVPQTRNRTYLVCFSNQKAEFTFPQTEPLESTLQDLLEQDVAEKYFLSERII 205


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 561

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+G+PQ RER++I+       +  F FP       RL D LE  +D+K  IS K  
Sbjct: 149 LNAKDYGIPQNRERVFIVSIRKDIDTGIFSFPKGFDNGLRLKDFLENEVDEKYYISEKAT 208

Query: 59  EGHQKR-KENNKIAGKGFGYGLFFENSATTNTLSAR 93
           +G  +  K  +          +  ++S  + TL  R
Sbjct: 209 QGLLRALKRPHTPK-------MLNKDSEYSPTLDTR 237


>gi|167747653|ref|ZP_02419780.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239625035|ref|ZP_04668066.1| modification methylase Rho11sI [Clostridiales bacterium 1_7_47_FAA]
 gi|167653015|gb|EDR97144.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239521421|gb|EEQ61287.1| modification methylase Rho11sI [Clostridiales bacterium 1_7_47FAA]
          Length = 504

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN--- 55
           + A ++G+PQ RER+Y++       + +F FP P+    RL DILE+ +D+K  +S+   
Sbjct: 158 LNAKNYGIPQNRERVYLVLIKKECDNGKFVFPEPMENGRRLMDILEDEVDEKYYLSDDKV 217

Query: 56  -KLWEGHQKRKE 66
            KL    ++RK 
Sbjct: 218 QKLITDMKERKA 229


>gi|323152708|gb|EFZ38980.1| DNA-cytosine methyltransferase [Escherichia coli EPECa14]
          Length = 374

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 4   CDFGVPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEEHIDDKSTISNK 56
             F +PQ RER+ ++ F    N   +F            +  L  +L+  ++ K  ++  
Sbjct: 269 KHF-LPQHRERIVLVGFRRDLNLKADFTLRDISKCFPAQRVTLAQLLDPMVEAKYILTPV 327

Query: 57  LWEGHQKRKE 66
           LW+   +  +
Sbjct: 328 LWKYLYRYAK 337


>gi|315608882|ref|ZP_07883855.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
 gi|315249409|gb|EFU29425.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
          Length = 312

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI--KPRLGDILEEHIDDKSTISNKLW 58
           + A DFG+PQ+RER+ I+ F + ++ F FPTP+ I  +  L DILE  +D K  + +K+ 
Sbjct: 147 LNALDFGIPQKRERIIIVGFKD-NILFSFPTPVPISQRKTLKDILEIDVDKKYYVKDKIR 205

Query: 59  EGHQKR 64
           E    R
Sbjct: 206 ESRLMR 211


>gi|254443346|ref|ZP_05056822.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198257654|gb|EDY81962.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 349

 Score = 83.0 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTISNKL 57
           +KA DFG+ Q+RER++I+ F        F +P     + ++ DILE  H   +  ++ K 
Sbjct: 176 LKASDFGLAQKRERVFIVGFRKSLGVEGFSYPEKGNDRSKISDILEPSHSVGQWLLTKKS 235

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFEN 83
               +      K+AG G GY +  EN
Sbjct: 236 LACLRDHSSKQKLAGNGHGYAILDEN 261


>gi|16923911|gb|AAL31632.1|AF438204_2 C5 DNA methyltransferase [Positive selection vector pMTet1]
          Length = 418

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  FG+PQ+R+R Y++ FLN ++ F+FP P  I   +G++LE  +    +IS  L + 
Sbjct: 246 LDASHFGIPQKRKRFYLVAFLNQNIHFEFPKPPMISKDIGEVLESDVTG-YSISEHLQKS 304

Query: 61  HQKRKENNKIAGKGFGYGLFFEN-SATTNTLSARYYK 96
           +  +K++ K         L  +N +    TL + Y+K
Sbjct: 305 YLFKKDDGK-------PSLIDKNTTGAVKTLVSTYHK 334


>gi|127464|sp|P11408|MTM1_MORSP RecName: Full=Modification methylase MspI; Short=M.MspI; AltName:
           Full=Cytosine-specific methyltransferase MspI
 gi|44539|emb|CAA32393.1| unnamed protein product [Moraxella sp.]
          Length = 418

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  FG+PQ+R+R Y++ FLN ++ F+FP P  I   +G++LE  +    +IS  L + 
Sbjct: 246 LDASHFGIPQKRKRFYLVAFLNQNIHFEFPKPPMISKDIGEVLESDVTG-YSISEHLQKS 304

Query: 61  HQKRKENNKIAGKGFGYGLFFEN-SATTNTLSARYYK 96
           +  +K++ K         L  +N +    TL + Y+K
Sbjct: 305 YLFKKDDGK-------PSLIDKNTTGAVKTLVSTYHK 334


>gi|159026805|emb|CAO86650.1| ngoBIM [Microcystis aeruginosa PCC 7806]
          Length = 331

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ+RER++I+ F      F +P P   +  L +ILEE++ D    S K+ + 
Sbjct: 156 LNALNFGLPQKRERIFIVGFREAR-GFIWPKPALSRTSLTEILEENVSDFYYASEKIQKS 214

Query: 61  HQKRKENNK 69
              ++E  K
Sbjct: 215 RLLKREGKK 223


>gi|281420730|ref|ZP_06251729.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
 gi|281405022|gb|EFB35702.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
          Length = 432

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + +CD+G+PQ RER++ + F  P+ +FK+P P+ ++ ++ D LE++ID K  +  K  + 
Sbjct: 203 LNSCDYGIPQHRERVFCLGFKKPT-DFKYPAPIKLEYKMYDFLEDYIDTKYFLKEKGIKF 261

Query: 61  HQKRKENNKI 70
               K   K 
Sbjct: 262 VTSHKNREKS 271


>gi|317497298|ref|ZP_07955621.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895367|gb|EFV17526.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 363

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A D+GVPQ RER++ I  LN   +F+FP    +K +L DILE+++D K  + N 
Sbjct: 204 LNARDYGVPQNRERVFCISELNGENKFEFPKSRELKLKLYDILEKNVDSKYYLKNN 259


>gi|291087089|ref|ZP_06345376.2| modification methylase HpaII [Clostridium sp. M62/1]
 gi|291076158|gb|EFE13522.1| modification methylase HpaII [Clostridium sp. M62/1]
          Length = 490

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR---------LGDILEEHIDDKST 52
              +FG+PQ R R+YI+ F                P          + DIL+  + ++  
Sbjct: 182 NTRNFGLPQNRPRVYIVAFSRNYFGEHLKLIPERTPEKSEKVIFKSVRDILDVDVSERFF 241

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLFFENS---ATTNTLSA 92
           +S+ L +  ++ K   K  G GFG  +           +T+ A
Sbjct: 242 LSSGLLKTLEEHKARQKRNGNGFGCRIANATEIECPIASTILA 284


>gi|306828113|ref|ZP_07461376.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304429650|gb|EFM32696.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 214

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A D+GVPQ RER++ +  L     + FP    +  RL D+LEE +D+K  +S 
Sbjct: 150 LNAKDYGVPQNRERVFCVSILGDHEPYIFPEKQELTIRLKDVLEEDVDEKYYLSE 204


>gi|288576182|ref|ZP_05978340.2| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288566126|gb|EFC87686.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 406

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F   P+  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 179 MNSKDYGIPQHRERIFVVGFHTPPTNGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 235


>gi|319956919|ref|YP_004168182.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
           16511]
 gi|319419323|gb|ADV46433.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
           16511]
          Length = 394

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           +    +G+PQ RER +++ F + +    F+FP  + +K  L D+LE  +D+K  +++K  
Sbjct: 145 LNTKHYGLPQNRERYFLVGFKSKTAGERFRFPKKVPLKLILSDVLENKVDEKYYLTDKAL 204

Query: 59  EGHQKRKENNKIAGKG 74
           E        N+  G G
Sbjct: 205 EYM------NRDTGDG 214


>gi|145629543|ref|ZP_01785341.1| modification methylase HaeII [Haemophilus influenzae 22.1-21]
 gi|144978386|gb|EDJ88150.1| modification methylase HaeII [Haemophilus influenzae 22.1-21]
          Length = 219

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    + +   +S++L 
Sbjct: 45  LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDEL- 102

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
               KRK  + I        ++ EN   +  +SA
Sbjct: 103 ----KRKRLSSITKDVPYPSIWHEN--ISGNVSA 130


>gi|56461628|ref|YP_156909.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
 gi|56180638|gb|AAV83360.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
          Length = 419

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFGVPQ R+R Y++ F      F FP P  IK  +G +LE+   +  +IS  L + 
Sbjct: 240 LNASDFGVPQNRKRFYLVAFDGKDCGFSFPQPPMIKADIGTLLEKG-AEGYSISEHLQKT 298

Query: 61  HQKRKENNKIAGKGFGYGLFFEN-SATTNTLSARYYK 96
           +  +K++ +         L   N      TL + Y+K
Sbjct: 299 YLFKKDDGR-------PILIDRNTKGPMRTLVSSYHK 328


>gi|161869767|ref|YP_001598934.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161595320|gb|ABX72980.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 411

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|218767941|ref|YP_002342453.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|6900408|emb|CAB72018.1| putative cytosine-specific methyltransferase [Neisseria
           meningitidis]
 gi|121051949|emb|CAM08255.1| putative modification methylase [Neisseria meningitidis Z2491]
          Length = 411

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|148826843|ref|YP_001291596.1| modification methylase HaeII [Haemophilus influenzae PittGG]
 gi|148718085|gb|ABQ99212.1| modification methylase HaeII [Haemophilus influenzae PittGG]
          Length = 318

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    + +   +S++L 
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDEL- 201

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
               KRK  + I        ++ EN   +  +SA
Sbjct: 202 ----KRKRLSSITKDVPYPSIWHEN--ISGNVSA 229


>gi|319776347|ref|YP_004138835.1| Cytosine-specific methyltransferase [Haemophilus influenzae F3047]
 gi|329123500|ref|ZP_08252064.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
 gi|317450938|emb|CBY87164.1| Cytosine-specific methyltransferase [Haemophilus influenzae F3047]
 gi|327471082|gb|EGF16537.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    + +   +S++L 
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDEL- 201

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
               KRK  + I        ++ EN   +  +SA
Sbjct: 202 ----KRKRLSSITKDVPYPSIWHEN--ISGNVSA 229


>gi|325127899|gb|EGC50802.1| DNA-cytosine methyltransferase [Neisseria meningitidis N1568]
          Length = 411

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|304387865|ref|ZP_07370039.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|254670653|emb|CBA06706.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha153]
 gi|254672637|emb|CBA06420.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
 gi|261392815|emb|CAX50396.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis 8013]
 gi|304338130|gb|EFM04266.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410190|emb|CBY90526.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134031|gb|EGC56686.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325203903|gb|ADY99356.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
          Length = 411

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|15676724|ref|NP_273868.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7226061|gb|AAF41239.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308389005|gb|ADO31325.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
 gi|316984499|gb|EFV63467.1| modification methylase HpaII [Neisseria meningitidis H44/76]
 gi|325129944|gb|EGC52743.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325140023|gb|EGC62552.1| DNA-cytosine methyltransferase [Neisseria meningitidis CU385]
 gi|325206334|gb|ADZ01787.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 411

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|121634611|ref|YP_974856.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|4887086|gb|AAD32180.1|AF125564_2 putative site specific DNA methyltransferase [Neisseria
           meningitidis]
 gi|120866317|emb|CAM10058.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|325132026|gb|EGC54724.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325135954|gb|EGC58564.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325137780|gb|EGC60355.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142075|gb|EGC64502.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198036|gb|ADY93492.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325202381|gb|ADY97835.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325207867|gb|ADZ03319.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 411

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 184 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 240


>gi|12229852|sp|O30868|MTH2_HAEAE RecName: Full=Modification methylase HaeII; Short=M.HaeII; AltName:
           Full=Cytosine-specific methyltransferase HaeII
 gi|2425087|gb|AAB70829.1| HaeII methylase [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    + +   +S++L 
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDEL- 201

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
               KRK  + I        ++ EN   +  +SA
Sbjct: 202 ----KRKRLSSITKDVPYPSIWHEN--ISGNVSA 229


>gi|68250112|ref|YP_249224.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
 gi|68058311|gb|AAX88564.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
          Length = 318

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ FL+  + F+FP P+G    L +ILE    + +   +S++L 
Sbjct: 144 LNTLDFGLPQKRERIYIVGFLD-KLHFEFPKPIGKYEELSNILESDDVVPNNYFLSDEL- 201

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
               KRK  + I        ++ EN   +  +SA
Sbjct: 202 ----KRKRLSSITKDVPYPSIWHEN--ISGNVSA 229


>gi|462658|sp|P34878|MTSB_LACLC RecName: Full=Modification methylase ScrFIB; Short=M.ScrFI-B;
           Short=M.ScrFIB; AltName: Full=Cytosine-specific
           methyltransferase ScrFIB
 gi|149495|gb|AAA16838.1| methyl-5-cytosine methylase [Lactococcus lactis]
 gi|2327032|gb|AAB66694.1| 5-methyl-cytosine-methyltransferase [Lactococcus lactis subsp.
           cremoris]
 gi|739995|prf||2004282A methyl-5-cytosine methyltransferase
          Length = 360

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A DFG+PQ RER++ I  LNP+ +F FP    +   + D+LEE++ +K  + N 
Sbjct: 201 LNARDFGIPQNRERVFCISILNPNEDFTFPQKQNLTLSMNDLLEENVSEKFYLKNN 256


>gi|325144138|gb|EGC66445.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325200491|gb|ADY95946.1| DNA-cytosine methyltransferase [Neisseria meningitidis H44/76]
          Length = 406

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 179 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 235


>gi|313668701|ref|YP_004048985.1| modification methylase [Neisseria lactamica ST-640]
 gi|313006163|emb|CBN87625.1| putative modification methylase [Neisseria lactamica 020-06]
          Length = 372

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           M + D+G+PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 145 MNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 201


>gi|166367724|ref|YP_001659997.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
 gi|166090097|dbj|BAG04805.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
          Length = 330

 Score = 80.7 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 11/82 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ+RER++I+ F      F +P P   +  L +ILEE++ D    S ++ + 
Sbjct: 156 LNALNFGLPQKRERIFIVGFREAR-GFIWPKPALSRTTLTEILEENVSDFYYASARIQKS 214

Query: 61  --HQKRKEN--------NKIAG 72
              ++  +         ++  G
Sbjct: 215 RFLKREGKKPYSEPTIWHENKG 236


>gi|170719133|ref|YP_001784281.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827262|gb|ACA32633.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 408

 Score = 80.7 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           M + ++G+PQ RER++++ F  +P   F+FPT + ++  + D LE++ D K  +  K  +
Sbjct: 180 MNSKNYGIPQHRERIFVVGFKTSPKGGFQFPTKIPLERTMQDFLEDYTDSKYFLKEKGIK 239

Query: 60  GHQKRKENNK 69
                K   K
Sbjct: 240 FVTSSKNRQK 249


>gi|296313699|ref|ZP_06863640.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
 gi|296839717|gb|EFH23655.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
          Length = 315

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LGD+LE    ++    +S+ L 
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGDLLENDRDVEPSYFLSDAL- 199

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 200 ----KQKRLAALKKAPPTPSIWHEN 220


>gi|148826164|ref|YP_001290917.1| modification methylase [Haemophilus influenzae PittEE]
 gi|148716324|gb|ABQ98534.1| modification methylase [Haemophilus influenzae PittEE]
 gi|162532590|gb|ABY16693.1| probable methylase [Haemophilus influenzae]
 gi|309973308|gb|ADO96509.1| Probable cytosine-specific DNA methyltransferase [Haemophilus
           influenzae R2846]
          Length = 409

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           M + ++G+PQ RER++++ F   P   F FP  + ++  + D LE++ D K  +  K  +
Sbjct: 181 MNSKNYGIPQHRERIFVVGFKTPPQGGFMFPAEIPLEHSMQDFLEDYTDSKYYLKEKGIK 240

Query: 60  GHQKRKENNK 69
                K   K
Sbjct: 241 FVTSSKNRQK 250


>gi|268595734|ref|ZP_06129901.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291044897|ref|ZP_06570606.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397972|ref|ZP_06642178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|268549123|gb|EEZ44541.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291011791|gb|EFE03787.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611918|gb|EFF40987.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 320

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 147 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 204

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 205 ----KQKRLAALKKAPPTPSIWHEN 225


>gi|239999928|ref|ZP_04719852.1| NgoIM [Neisseria gonorrhoeae 35/02]
 gi|240116859|ref|ZP_04730921.1| NgoIM [Neisseria gonorrhoeae PID1]
 gi|240127204|ref|ZP_04739865.1| NgoIM [Neisseria gonorrhoeae SK-93-1035]
          Length = 278

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 105 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 162

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 163 ----KQKRLAALKKAPPTPSIWHEN 183


>gi|268597921|ref|ZP_06132088.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
 gi|268551709|gb|EEZ46728.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
          Length = 320

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 147 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 204

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 205 ----KQKRLAALKKAPPTPSIWHEN 225


>gi|194099739|ref|YP_002002874.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|240013125|ref|ZP_04720038.1| NgoIM [Neisseria gonorrhoeae DGI18]
 gi|240015568|ref|ZP_04722108.1| NgoIM [Neisseria gonorrhoeae FA6140]
 gi|240114103|ref|ZP_04728593.1| NgoIM [Neisseria gonorrhoeae MS11]
 gi|240114658|ref|ZP_04728720.1| NgoIM [Neisseria gonorrhoeae PID18]
 gi|240120196|ref|ZP_04733158.1| NgoIM [Neisseria gonorrhoeae PID24-1]
 gi|240122493|ref|ZP_04735449.1| NgoIM [Neisseria gonorrhoeae PID332]
 gi|240126658|ref|ZP_04739544.1| NgoIM [Neisseria gonorrhoeae SK-92-679]
 gi|254492718|ref|ZP_05105889.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|260441536|ref|ZP_05795352.1| NgoIM [Neisseria gonorrhoeae DGI2]
 gi|268600171|ref|ZP_06134338.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268600304|ref|ZP_06134471.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268602536|ref|ZP_06136703.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268681085|ref|ZP_06147947.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268685237|ref|ZP_06152099.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268685565|ref|ZP_06152427.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|193935029|gb|ACF30853.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|226511758|gb|EEH61103.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|268584302|gb|EEZ48978.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268584435|gb|EEZ49111.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268586667|gb|EEZ51343.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268621369|gb|EEZ53769.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268625521|gb|EEZ57921.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268625849|gb|EEZ58249.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|317165226|gb|ADV08767.1| NgoIM [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 315

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 199

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 200 ----KQKRLAALKKAPPTPSIWHEN 220


>gi|59802299|ref|YP_209011.1| NgoIM [Neisseria gonorrhoeae FA 1090]
 gi|240081825|ref|ZP_04726368.1| NgoIM [Neisseria gonorrhoeae FA19]
 gi|59719194|gb|AAW90599.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA 1090]
          Length = 315

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 199

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 200 ----KQKRLAALKKAPPTPSIWHEN 220


>gi|197303495|ref|ZP_03168534.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
           29176]
 gi|197297493|gb|EDY32054.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score = 78.4 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 2   KACDFGVPQRRERLYIIDFLNP---------SVEFKFPTPLGIKPRLGDILEEHIDDKST 52
              +FG+PQ R R+YI+ F            + +        I   + ++L+ ++DDK  
Sbjct: 165 NTREFGLPQNRPRVYIMAFSKKIYGNAIKLLNAQLPISRDETIFRDVTEVLDTNVDDKYY 224

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLF---FENSATTNTLSA 92
           ++    E  ++ K   K  G GFGY +     E+     T+ A
Sbjct: 225 MAEGYLETLKRHKARQKKNGYGFGYCVVNKSNEDHPIAYTILA 267


>gi|12229862|sp|Q59603|MTB1_NEIGO RecName: Full=Modification methylase NgoBI; Short=M.NgoBI; AltName:
           Full=Cytosine-specific methyltransferase NgoBI;
           Short=M.NgoI
 gi|5924404|gb|AAB03206.2| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]
          Length = 317

 Score = 78.0 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YI+ F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 142 LNTLDFGLPQKRERIYIVGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDTL- 199

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 200 ----KQKRLAALKKAPPTPSIWHEN 220


>gi|291165856|gb|EFE27903.1| modification methylase EcoRII [Filifactor alocis ATCC 35896]
          Length = 375

 Score = 77.6 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFK--------FPTPLG--IKPRLGDILEEHIDDKS 51
            + +FG+PQ R R YI+ F                 PT     +   L  +LE   + K 
Sbjct: 165 NSRNFGIPQNRPRTYIMAFNRQLYGADTLLGIGNLLPTEKNRYLYEDLNSLLEFRAEPKY 224

Query: 52  TISNKLWEGHQKRKENNKIAGKGFGYGLFFE---NSATTNTLSA 92
            +S+  +    + +E  +  G GFGY +  E        NT+ A
Sbjct: 225 YMSSGYFNTLVRHRERERKKGNGFGYRVVNEPGIEHPVANTIMA 268


>gi|219855710|ref|YP_002472832.1| hypothetical protein CKR_2367 [Clostridium kluyveri NBRC 12016]
 gi|219569434|dbj|BAH07418.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 419

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP-LGIKPRLGDILEEHIDDKSTISNKL 57
           M A +FG+PQRRER+ I+ F       +F FP      K  +  ILE +     +IS +L
Sbjct: 245 MDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGNPDNKVPINAILEHNPTG-YSISKRL 303

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
            E +  +K++ K         +   +S    NTL A Y+K
Sbjct: 304 QESYLFKKDDGK-------PQIVDFDSTIQVNTLVASYHK 336


>gi|153955289|ref|YP_001396054.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348147|gb|EDK34683.1| Predicted DNA methylase [Clostridium kluyveri DSM 555]
          Length = 416

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP-LGIKPRLGDILEEHIDDKSTISNKL 57
           M A +FG+PQRRER+ I+ F       +F FP      K  +  ILE +     +IS +L
Sbjct: 242 MDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGNPDNKVPINAILEHNPTG-YSISKRL 300

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
            E +  +K++ K         +   +S    NTL A Y+K
Sbjct: 301 QESYLFKKDDGK-------PQIVDFDSTIQVNTLVASYHK 333


>gi|220930232|ref|YP_002507141.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000560|gb|ACL77161.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 416

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP-LGIKPRLGDILEEHIDDKSTISNKL 57
           M A +FG+PQRRER+ I+ F       +F FP      K  +  ILE +     +IS +L
Sbjct: 242 MDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGNPDNKVPINAILEHNPTG-YSISKRL 300

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
            E +  +K++ K         +   +S    NTL A Y+K
Sbjct: 301 QESYLFKKDDGK-------PQIVDFDSTIQVNTLVASYHK 333


>gi|254804105|ref|YP_003082326.1| putative type II DNA modification methyltransferase [Neisseria
           meningitidis alpha14]
 gi|254667647|emb|CBA03458.1| putative type II DNA modification methyltransferase [Neisseria
           meningitidis alpha14]
          Length = 315

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE--EHIDDKSTISNKLW 58
           +   DFG+PQ+RER+YII F + ++ F FP P+     LG++LE    ++    +S+ L 
Sbjct: 142 LNTLDFGLPQKRERIYIIGFSD-NIPFYFPEPINQYRPLGELLENDRDVEPSYFLSDAL- 199

Query: 59  EGHQKRKENNKIAGKGFGYGLFFEN 83
               K+K    +        ++ EN
Sbjct: 200 ----KQKRLAALKKAPPTPSIWHEN 220


>gi|307152213|ref|YP_003887597.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982441|gb|ADN14322.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 317

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ+RER++I+  L P + F++P P+     L +ILE  +      S ++   
Sbjct: 159 LNALDFGLPQKRERIFIVGCLEP-IPFEWPMPVRTIKPLKEILETTVAASYYASEQI--- 214

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
              R    +         ++ EN      +SA
Sbjct: 215 RLNRLAKYQGKNDN-EPTIWHENK--AGHISA 243


>gi|154173655|ref|YP_001409100.1| cytosine-specific methyltransferase NlaX [Campylobacter curvus
           525.92]
 gi|112802981|gb|EAU00325.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
           curvus 525.92]
          Length = 352

 Score = 75.7 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL--NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +   D+G+ Q RER+YI+ FL  +  + F F   + +   + D L++ +D+K  ++  
Sbjct: 152 LNTKDYGIAQNRERIYIVGFLDFDEYLNFDFAPRVPLTTAIRDYLDDEVDEKYYLNEN 209


>gi|331091171|ref|ZP_08340013.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405393|gb|EGG84929.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 375

 Score = 75.3 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG----------IKPRLGDILEEHIDDKS 51
            + +FG+PQ R R YI+ F            +           +   L ++LE H + K 
Sbjct: 165 NSRNFGIPQNRPRTYIMAFNRQRYGAAALAGIENCLPIENDWYLYEDLNELLEFHAEAKY 224

Query: 52  TISNKLWEGHQKRKENNKIAGKGFGYGLFFE---NSATTNTLSA 92
            +++   +   + +E     G GFGY +  E        NT+ A
Sbjct: 225 YMASGYLDTLIRHREREHGKGNGFGYRIVNEPGIEHPVANTIMA 268


>gi|254303554|ref|ZP_04970912.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323746|gb|EDK88996.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 492

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + + D+G+PQ RER++++ F        +F+FP P  ++  + D L +++  K  +  K
Sbjct: 265 LNSKDYGIPQNRERVFVVGFRKDLKLKKKFEFPRPFLLEKTMQDFLLDNVAGKYYLQEK 323


>gi|153870185|ref|ZP_01999636.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152073352|gb|EDN70367.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 235

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + + DFG+PQ+RER  I+ F   ++ F FP PLGIKP L  ILE+   D     N L   
Sbjct: 144 LNSLDFGIPQKRERTIIVGF-QENIAFSFPKPLGIKPDLTKILEK---DSEVEKNILLLM 199

Query: 61  HQKRKENNKIA 71
             K++E  K+ 
Sbjct: 200 SLKKRECKKLN 210


>gi|291561285|emb|CBL40084.1| DNA-methyltransferase (dcm) [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + + D+GVPQ RER++I+       +  F+FP  + ++  +GD+L+E +  +  +S +  
Sbjct: 153 LNSADYGVPQGRERVFIVSIRKDVDDHSFRFPPVIPLEMCMGDLLDEEVPAEFYLSEEKT 212

Query: 59  EGHQKRKENN 68
           +   +   N+
Sbjct: 213 QSVIRHDSNH 222


>gi|127427|sp|P17044|MTBF_BACSU RecName: Full=Modification methylase BsuFI; Short=M.BsuFI; AltName:
           Full=Cytosine-specific methyltransferase BsuFI
 gi|39984|emb|CAA35888.1| unnamed protein product [Bacillus subtilis]
          Length = 409

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP-LGIKPRLGDILEEHIDDKSTISNKL 57
           M A +FG+PQRRER+ I+ F       +F FP      K  +  ILE +     +IS +L
Sbjct: 241 MDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGNPDNKVPINAILEHNPTG-YSISKRL 299

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
            E +  +K++ K         +         NTL A Y+K
Sbjct: 300 QESYLFKKDDGK-------PQIVDFRCTYQVNTLVASYHK 332


>gi|218439646|ref|YP_002377975.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218172374|gb|ACK71107.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 320

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ+RER++I+  L+P + F +P        L +ILE  +      S ++ + 
Sbjct: 159 LNALDFGLPQKRERIFIVGCLDP-IPFIWPNSTRPFKPLQEILETQVSSSYYASEQIRK- 216

Query: 61  HQKRKENNKIAGKGFG--YGLFFENSATTNTLSA 92
              R    +     F     ++ EN      +SA
Sbjct: 217 --NRLAKYEGK---FYNEPTIWHENK--AGHISA 243


>gi|159026722|emb|CAO89036.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 455

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDILEE 45
           + A DFG+PQ RER++I+           FKFP PLGI P++ DILE+
Sbjct: 169 LNAYDFGLPQNRERVFIVGIRKDIDNYERFKFPLPLGIHPKVLDILED 216


>gi|166368611|ref|YP_001660884.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090984|dbj|BAG05692.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 464

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDILEE 45
           + A DFG+PQ RER++I+           FKFP PLGI P++ DILE+
Sbjct: 177 LNAYDFGLPQNRERVFIVGIRKDIDNYERFKFPLPLGIHPKVLDILED 224


>gi|302671270|ref|YP_003831230.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302395743|gb|ADL34648.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 579

 Score = 72.6 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A D+GVPQ RERL+++ F N     VEF FP  + ++ ++ D L ++      +  K
Sbjct: 354 LNARDYGVPQNRERLFVVGFRNDLDLDVEFSFPQAIELEKKMQDFLLDNAPGGYFLPEK 412


>gi|313678561|ref|YP_004056301.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950401|gb|ADR24996.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 315

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDK--STISN 55
           + A D+G +PQ RER+YI+ F +      F FP P+ ++  + D LE ++DD      ++
Sbjct: 145 LNAKDYGDIPQNRERIYIVGFKDKHSHDAFSFPLPVKLRTSINDCLEVNVDDDSFYYSAD 204

Query: 56  K 56
           K
Sbjct: 205 K 205


>gi|172038109|ref|YP_001804610.1| putative modification methylase [Cyanothece sp. ATCC 51142]
 gi|171699563|gb|ACB52544.1| putative modification methylase [Cyanothece sp. ATCC 51142]
          Length = 344

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW-E 59
           + A +FG+PQ+RER++I+ F +P   F +  P  +   L +I+E+ + +    S ++   
Sbjct: 167 LNALNFGLPQKRERVFIVGFRDPLA-FIWKQPNILMKPLSEIIEKSVSEFYYASEQIQRN 225

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
              K + N++         ++ EN      +SA
Sbjct: 226 RLAKYQGNHQHK-----ITIWHENK--AGHISA 251


>gi|325269501|ref|ZP_08136117.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988120|gb|EGC20087.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 388

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A D+G+PQ RERLY + F     +FK+P P+ ++ ++ D LE++ + +    +K
Sbjct: 180 LNARDYGIPQTRERLYCVGFKK-KTKFKYPAPIPLRYKMYDFLEDYTNSEYFEKDK 234


>gi|323650448|gb|ADX97301.1| M.Fnu4HI [Fusobacterium nucleatum]
          Length = 351

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEE-HIDDKSTIS-- 54
           + A D+G +PQ RER+YI+ F N      F+FP PL +   + D+LE+ +ID+K   S  
Sbjct: 145 LNAKDYGNIPQNRERIYIVGFKNEEHFKNFEFPFPLELTRNIEDMLEKNNIDEKYYYSKE 204

Query: 55  -NKLWEGHQK 63
            NK ++  +K
Sbjct: 205 KNKFYDTLEK 214


>gi|291320332|ref|YP_003515594.1| modification methylase Bsp6I [Mycoplasma agalactiae]
 gi|290752665|emb|CBH40638.1| Modification methylase Bsp6I [Mycoplasma agalactiae]
          Length = 315

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK--STISN 55
           + A D+G +PQ RER+YI+ F +      F FP P+ +K  L D LE ++DD      ++
Sbjct: 145 LNAKDYGDIPQNRERIYIVGFKDKHSYDIFSFPLPVKLKTSLNDCLEVNVDDDCFYYSAD 204

Query: 56  K 56
           K
Sbjct: 205 K 205


>gi|54297036|ref|YP_123405.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
 gi|53750821|emb|CAH12229.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
          Length = 320

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISNKLW 58
           + + DFGVPQ+RER YI+ F++ +V F+FP   G+   L  ILE+   I +K   S+ + 
Sbjct: 146 LNSLDFGVPQKRERTYIVGFID-NVPFEFPK-GGVPFNLESILEKEQQIPNKYYASDYI- 202

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSA 85
               ++K    + G      ++ EN +
Sbjct: 203 ----RQKRIAALKGVPPIPSIWHENKS 225


>gi|251778642|ref|ZP_04821562.1| methyl transferase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082957|gb|EES48847.1| methyl transferase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 586

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + + D+GV Q RER++++ F N       F+ P  + +  ++ D L +++  K  +++K
Sbjct: 330 LNSKDYGVAQNRERIFVVGFRNDLELVKPFEEPEKVQLNKKMKDYLLDNVSGKYYLNSK 388


>gi|67922277|ref|ZP_00515790.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67855853|gb|EAM51099.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 226

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++II   +P + F F  P   +  L +I+E+ + +    S  + +
Sbjct: 167 LNALDFGLPQKRERIFIIGLRDP-LNFTFKKPNISRKPLSEIIEKSVSEFYYASEHIQK 224


>gi|310657624|ref|YP_003935345.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
           519]
 gi|308824402|emb|CBH20440.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 326

 Score = 70.3 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 14/98 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR----LGDILEEHIDDKSTISN 55
           M + +FGVPQ+RER+ II F     +EF FP  +         L  ++E  + +K   S 
Sbjct: 154 MNSVNFGVPQKRERVIIIGFRKDLELEFNFPEEIIANEWEFLNLSMVIESEVSEKYFFSE 213

Query: 56  KLWEG-HQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
           K  +G  +KR   NK        G   + +   NT+ A
Sbjct: 214 KAVQGMLKKRATMNK--------GRAQDINKPCNTVGA 243


>gi|288928693|ref|ZP_06422539.1| modification methylase NgoBI (Cytosine-specific methyltransferase
           NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329677|gb|EFC68262.1| modification methylase NgoBI (Cytosine-specific methyltransferase
           NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 309

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLN----PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A DFG+PQ+RER+ I+ F +     + +F F         L  ILEE  D    I  K
Sbjct: 142 LNAMDFGLPQKRERVIIVGFRDKMAYENFDFTFKKKPFN---LATILEEEKD----IDPK 194

Query: 57  LWEG-HQKRKENNKIAGKG-FGYGLFFENSA 85
           L+     + K     AGK  F   ++ EN A
Sbjct: 195 LYASKTIREKRKASTAGKEVFYPSIWHENKA 225


>gi|256822924|ref|YP_003146887.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796463|gb|ACV27119.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
          Length = 419

 Score = 69.9 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 12/64 (18%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP-----------SVEFKFPTPLGIKPRLGDILEEHID 48
           + + DFG VPQ RER+YII F +            + EF +P P+ +   + D+L++ + 
Sbjct: 239 LNSMDFGDVPQNRERIYIIGFKDEANWQNNKGATRTSEFSWPEPIRLSKSVRDLLDKQVS 298

Query: 49  DKST 52
           +   
Sbjct: 299 EHYF 302


>gi|82752078|ref|YP_417819.1| DNA modification methylase [Staphylococcus aureus RF122]
 gi|82657609|emb|CAI82057.1| DNA modification methylase [Staphylococcus aureus RF122]
          Length = 402

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDF--LNPSVEFKFPTPLGIKPRLGDIL--EEHIDDKST 52
           + A D+G +PQ RER+YI+ F        F+FP  + +K  + DI+  E  ID++  
Sbjct: 156 LNAKDYGDIPQNRERIYIVGFKCRKAFDLFEFPEKIDLKTGIKDIINFESEIDERYY 212


>gi|10954474|ref|NP_039765.1| DNA cytosine-5 methylase subunit A [Methanothermobacter
           thermautotrophicus]
 gi|266583|sp|P29567|MTHT_METTF RecName: Full=Modification methylase MthTI; Short=M.MthTI; AltName:
           Full=Cytosine-specific methyltransferase MthTI
 gi|44641|emb|CAA48436.1| TIM [Methanothermobacter thermautotrophicus]
 gi|149743|gb|AAA73370.1| TIM [Methanothermobacter thermautotrophicus]
          Length = 330

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 18/96 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R+R++I+ +    +++F+FP PL  K  L D + +  + K  +      
Sbjct: 144 LNAKDYGVPQDRKRVFIVGYREDLNLKFEFPKPLNKKVTLRDAIGDLPEPKPAL------ 197

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARY 94
                 E N+  G+     L   N    T T S+RY
Sbjct: 198 ------EKNRSNGEN----LEVPNHEYMTGTFSSRY 223


>gi|329767116|ref|ZP_08258644.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
 gi|328837841|gb|EGF87466.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
          Length = 396

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK--STISN 55
           +   D+G VPQ RER+YI+ FL      +F+FP  + ++ +L DI++  I +K      +
Sbjct: 145 LNGKDYGNVPQNRERIYIVGFLEKESFDKFEFPKKIKLETKLSDIIDFDIKEKEIYYYRD 204


>gi|2599488|gb|AAB84141.1| FauI DNA methyltransferase [Flavobacterium aquatile]
          Length = 343

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 16/99 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFL--NPSVEFKFPTPL---GIKPRLGDILEEHID--DKSTI 53
           + + +FGVPQ+RER++I+ F   +  + FKFP P+   G K  L +++++  D  +K   
Sbjct: 165 LNSSEFGVPQKRERVFIVGFRDFDDYLNFKFPQPITLEGSKIVLKEVIDKKADTEEKWFF 224

Query: 54  SNKLWEGHQK-RKENNKIAGKGFGYGLFFENSATTNTLS 91
           S K  +G  + R++ NK        G   + +   NT+S
Sbjct: 225 SQKAVDGMLRVREKMNK--------GRVQDLNQPCNTIS 255


>gi|5420107|emb|CAB46561.1| cytosine-specific methyltransferase [Streptococcus thermophilus]
          Length = 316

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDIL--EEHIDDKSTIS 54
           M A D+G +PQ RER+YI+ F +     +F  P  + ++  + D++  +  +DDK   +
Sbjct: 145 MNAADYGNIPQNRERIYIVAFRDKEDYADFDLPKSIPLETSIKDVIDFDSKVDDKFYYT 203


>gi|1171044|sp|P43420|MTB6_BACSF RecName: Full=Modification methylase Bsp6I; Short=M.Bsp6I; AltName:
           Full=Cytosine-specific methyltransferase Bsp6I
 gi|547481|emb|CAA57293.1| site-specific DNA-methyltransferase (cytosine-specific) [Bacillus
           sp.]
 gi|1098125|prf||2115268B methyltransferase Bsp6IM
          Length = 315

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDI--LEEHIDDKSTISN 55
           + A DFG +PQ RER+YI+ F N      F FP P  +   + D+  L + +DD+   + 
Sbjct: 145 LNAKDFGNIPQNRERIYIVGFRNIEHYKNFNFPMPQPLTLTIKDMINLSDKLDDRFYYTE 204


>gi|308185227|ref|YP_003929360.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
 gi|308061147|gb|ADO03043.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
          Length = 317

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           +   DFG+PQ+R R++I+        ++EF FP  +  K    D+L++ ++ K  IS K+
Sbjct: 141 LNTLDFGIPQQRNRVFIVALRKNSFTNLEFVFPAKIPCKISTLDLLDKQVELKYFISQKM 200

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFE--NSATTNTLSARYYK 96
            +    +           GY +     ++    TL+A  +K
Sbjct: 201 IKTILGKGTK--------GY-IVEPSIDTPIAKTLTATMHK 232


>gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
 gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
          Length = 377

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER+ II    P + ++ F   +  K  L DILE+ ID K   S ++  
Sbjct: 222 LNALDFGLPQKRERIIIIGSKKPFLMDWTF--NVEKKKTLDDILEKDIDKKHYASPEIVA 279

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSA 85
              KRK  +  +       ++ EN +
Sbjct: 280 ---KRKAKHTAS---IYPSIWHENKS 299


>gi|325913633|ref|ZP_08175995.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325476992|gb|EGC80142.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 372

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           ++A DFG+ Q R+R+ I+ F +   +  F+FP        + DILE++ +    IS KL 
Sbjct: 199 LEASDFGLAQSRKRVIIVGFRSDIDDSSFEFPKGNSKHVAVKDILEDNPEG-YPISKKLQ 257

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENS-ATTNTLSARYYK 96
           E +  +K++ +         +  +NS     TL++ Y+K
Sbjct: 258 ENYLFKKDDGR-------PYVVDKNSTGLAKTLNSSYHK 289


>gi|322383485|ref|ZP_08057261.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152224|gb|EFX45054.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 425

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 26/81 (32%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--------------------------PSVEFKFPTPLG 34
           + +  +GVPQ RER++I+   +                           +  F +P    
Sbjct: 144 LNSKFYGVPQSRERVFIVCSRDVEPEAWSIEGNGVLAKAKRRLQAMGARTFNFDWPKNGE 203

Query: 35  IKPRLGDILEEHIDDKSTISN 55
           +  RL DILE  +D+K  +S 
Sbjct: 204 VMTRLRDILEPEVDEKYYLSP 224


>gi|331270911|ref|YP_004385622.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
 gi|329127303|gb|AEB77247.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
          Length = 318

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF--KFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           M   D+G+P  R RLYI+       +F  KFPT + +K  + D+LE+ ++DK  +++K++
Sbjct: 151 MNTSDYGLPHTRRRLYIVGQRKDLGDFDYKFPTEIELKLNVQDLLEKDVNDKYYLTDKMY 210

Query: 59  EG 60
           + 
Sbjct: 211 KT 212


>gi|309379398|emb|CBX21965.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 223

 Score = 68.0 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  GVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
          G PQ RER++++ F  P +  F+FP  + ++  + D LE++ D K  +  K
Sbjct: 2  GFPQHRERIFVVGFHTPPINGFQFPEKIELEHTMQDFLEDYTDSKYFLREK 52


>gi|293596744|ref|ZP_05263998.2| DNA-methyltransferase [Listeria monocytogenes J2818]
 gi|293592003|gb|EFG00338.1| DNA-methyltransferase [Listeria monocytogenes J2818]
          Length = 327

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKLWE 59
           + A DFG+PQ RER++++  L  +  F+FP  +     L D ++  +D     +S    +
Sbjct: 150 LNARDFGIPQNRERVFVVSVLGNNTGFQFPEKIESAMSLKDYIDFEVDPTDYALSENEKQ 209

Query: 60  GHQKRKEN---NKIAGKGF----GYGLFFENSATTNTLSARYYK 96
              +       +    KGF     +        T+ T   R  K
Sbjct: 210 LFFRENNKLFIHTNTKKGFQEVEQFDSVNVERPTSKTRRGRVGK 253


>gi|269122857|ref|YP_003305434.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268314183|gb|ACZ00557.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 329

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDIL--EEHID------DK 50
           + + DFG+PQ+RER+Y++ F        F FP P  +   + D+L  +E +       D 
Sbjct: 152 LNSLDFGIPQKRERIYMVCFRKDLNIKNFIFPKPFKLSTFVEDLLLPDEEVSNLIINRDD 211

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
             + +K  + +  +       GKG      +       TLSA
Sbjct: 212 LVLKDKEIKENSNKAIRIGTVGKGGQGERIYSPKGIAITLSA 253


>gi|254901064|ref|ZP_05260988.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
           J0161]
          Length = 320

 Score = 67.6 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKLWE 59
           + A DFG+PQ RER++++  L  +  F+FP  +     L D ++  +D     +S    +
Sbjct: 143 LNARDFGIPQNRERVFVVSVLGNNTGFQFPEKIESAMSLKDYIDFEVDPTDYALSENEKQ 202

Query: 60  GHQKRKEN---NKIAGKGF----GYGLFFENSATTNTLSARYYK 96
              +       +    KGF     +        T+ T   R  K
Sbjct: 203 LFFRENNKLFIHTNTKKGFQEVEQFDSVNVERPTSKTRRGRVGK 246


>gi|327463103|gb|EGF09424.1| modification methylase ScrFIA [Streptococcus sanguinis SK1]
          Length = 346

 Score = 67.2 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL----GIKPRLGDILEEHIDDKSTISNKL 57
           A  +GVPQ+RER++I+      +  F+FP            L  IL+++ID+K   S + 
Sbjct: 161 ATKYGVPQKRERVFIVGIRKDLNFTFEFPEEPIQNEEDYTPLKAILQKNIDEKYYFSERA 220

Query: 58  WEGHQKRKENNKIAGKG 74
            +G    K   K   KG
Sbjct: 221 VKGMLNSKS-GKKMNKG 236


>gi|218247578|ref|YP_002372949.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218168056|gb|ACK66793.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 727

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHI------DDKSTIS 54
           + A DFGVPQ RER+ II   +   +F         P+L + L++          + T+ 
Sbjct: 146 LNAKDFGVPQHRERIVIIATRHKKFDFNLIQQQKPIPKLREFLDKTGNFDYLHPKEYTLI 205

Query: 55  NK 56
           + 
Sbjct: 206 DN 207


>gi|167465361|ref|ZP_02330450.1| DNA-cytosine methyltransferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 432

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 26/81 (32%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--------------------------PSVEFKFPTPLG 34
           + +  +GVPQ RER++II   +                           +  F +P    
Sbjct: 144 LNSKFYGVPQSRERVFIICSRDVEPEAWSTEGNGVLTKAKRRLQMMGARTFNFDWPKNSE 203

Query: 35  IKPRLGDILEEHIDDKSTISN 55
           +  RL DILE  +D+K  +S 
Sbjct: 204 VTTRLRDILETEVDEKYYLSP 224


>gi|291551321|emb|CBL27583.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 595

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + + ++G+PQ RERL+++ F        +F FP P+ ++ ++ D L ++      +
Sbjct: 368 LNSKNYGIPQNRERLFVVGFREDLELAKKFSFPNPIPLRKKMKDFLMDNAPGGYFL 423


>gi|257061088|ref|YP_003138976.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256591254|gb|ACV02141.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 331

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHI------DDKSTIS 54
           + A DFGVPQ RER+ II   +   +F         P+L + L++          + T+ 
Sbjct: 146 LNAKDFGVPQHRERIVIIATRHKKFDFNLIQQQKPIPKLREFLDKTGNFDYLHSKEYTLI 205

Query: 55  NK 56
           + 
Sbjct: 206 DN 207


>gi|329769727|ref|ZP_08261128.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
 gi|328838089|gb|EGF87707.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
          Length = 406

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDK--STISN 55
           +   D+G +PQ RER+YI+ FL      +F+FP  + ++ +L DI++  I +K      +
Sbjct: 155 LNGKDYGNIPQNRERIYIVGFLEKESYDKFEFPNEIKLETKLSDIIDFDIKEKEIYYYRD 214


>gi|169823657|ref|YP_001691160.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832277|dbj|BAG09192.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 332

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDIL--EEHIDDKSTISN 55
           + A +FG +PQ RER+YI+ F + +    F+FP P+ +   + D +  E   D     + 
Sbjct: 147 LNATEFGNIPQNRERIYIVAFRDKNCLDNFEFPKPIELTTTIRDFIDFENKKDTSFYYTE 206

Query: 56  K 56
           K
Sbjct: 207 K 207


>gi|269121452|ref|YP_003309629.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268615330|gb|ACZ09698.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 372

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLWE 59
           + A ++ +PQ RERL+ +  L+  V++ FP P  +   L D+LE+ +D+K  I+  K   
Sbjct: 150 LNALNYEIPQNRERLFCLSILDDKVKYNFPGPKKLNILLKDLLEKEVDEKYFINEEKTKA 209

Query: 60  GHQKRKEN 67
             +K K+ 
Sbjct: 210 FIEKYKDK 217


>gi|220929948|ref|YP_002506857.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000276|gb|ACL76877.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 338

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 17/106 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL---EEHIDDKSTISN 55
           + A ++G+PQ RER+Y++ F N      F FP P  +K  + D L   E  ++       
Sbjct: 152 LNAVNYGIPQNRERIYMVCFRNDLNIENFNFPKPFPLKRYVEDFLLEDESQVEHLYIQRP 211

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFEN---------SATTNTLSA 92
              + +    E+NK + K    G+  +               TLSA
Sbjct: 212 ---DTYFNGVEDNKYSNKPIRLGIVNKGGQGERIYSTKGIAITLSA 254


>gi|314055098|ref|YP_004063436.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
 gi|313574989|emb|CBI70002.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
          Length = 315

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 8   VPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           VPQ RER+YI+ F +      F F    G K  L D +E  + DK   S+K 
Sbjct: 153 VPQHRERIYIVGFRDKELHDNFNFDFVEGDKGNLCDFMESCVPDKYYYSDKY 204


>gi|126660265|ref|ZP_01731380.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
 gi|126618440|gb|EAZ89194.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
          Length = 458

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPRLGDILEE----HIDDKSTI 53
           + + DFGVPQ RER++I+           ++FP PL ++ RL D+L+E     + +K  +
Sbjct: 173 INSYDFGVPQNRERVFIVGIRKDRKNCHHYQFPKPLKVQIRLLDVLDELKHCQVTEKVKL 232

Query: 54  SNKLWEG-----HQKRKENNKIAGKGFGYG 78
           + ++         + R + N      F + 
Sbjct: 233 TPEILFNGNIPPSRNRFQKNDELNDFFTFS 262


>gi|172039424|ref|YP_001805925.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
           51142]
 gi|171700878|gb|ACB53859.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 729

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE-----EHIDDK-STI 53
           + A DFGVPQ RER+ II  LN    F         P L   L+     E++D K  T+
Sbjct: 146 LNAKDFGVPQNRERIIIIGTLNKKFNFDLIDIQKNVPSLRSFLDQKGNFEYLDPKEYTL 204


>gi|281491829|ref|YP_003353809.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375540|gb|ADA65046.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKP----RLGDILEEHIDDKSTISN 55
           ++A ++G+PQ+RER++I+   N  + +F F  P    P     L  +L++  D+K   S+
Sbjct: 159 LRAVEYGIPQKRERVFIVGIRNDLNKKFHFADPPIQSPLDYTPLKKVLQKDFDEKYYFSD 218

Query: 56  KLWEGHQKRKENNKIAGKG 74
           +  EG  K K  +KI  KG
Sbjct: 219 RAVEGMLKSK-MSKIMNKG 236


>gi|15616070|ref|NP_244375.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
 gi|10176132|dbj|BAB07227.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
          Length = 326

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLG----IKPRLGDILEEHIDD 49
           + A D+ VPQ RER+ I+ F N     EF FP        ++  L D+ E   +D
Sbjct: 146 LNAKDYSVPQNRERVIIVGFRNDLGITEFTFPEKHDKIVTLREALADLPEPSPED 200


>gi|257870038|ref|ZP_05649691.1| DNA methylase [Enterococcus gallinarum EG2]
 gi|257804202|gb|EEV33024.1| DNA methylase [Enterococcus gallinarum EG2]
          Length = 401

 Score = 65.3 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDIL--EEHIDDKSTIS 54
           +   D+G VPQ RER+Y++ F N      F FP+ + +  +L D++  E   DDK    
Sbjct: 156 LNGKDYGNVPQNRERIYVVGFRNQQAFDNFHFPSKVELTTKLSDVIDFENPKDDKYYYK 214


>gi|289167787|ref|YP_003446056.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907354|emb|CBJ22191.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 346

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL----GIKPRLGDILEEHIDDKSTISNKL 57
           A  +GVPQ+RER++I+      +  F+FP            L  IL++ ID+K   S + 
Sbjct: 161 ATKYGVPQKRERVFIVGIRKDLNFTFEFPEEPIQNVEDYTPLKVILQQDIDEKYYFSERA 220

Query: 58  WEGHQKRKENNKIAGKG 74
            +G    K   K   KG
Sbjct: 221 VQGMLNSKS-GKKMNKG 236


>gi|148988377|ref|ZP_01819824.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926058|gb|EDK77132.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 343

 Score = 65.3 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL----GIKPRLGDILEEHIDDKSTISNKL 57
           A  +GVPQ+RER++I+      +  F+FP            L  IL++ ID+K   S + 
Sbjct: 161 ATKYGVPQKRERVFIVGIRKDLNFTFEFPEEPIQNVEDYTPLKVILQQDIDEKYYFSERA 220

Query: 58  WEGHQKRKENNKIAGKG 74
            +G    K   K   KG
Sbjct: 221 VQGMLNSKS-GKKMNKG 236


>gi|312281368|ref|YP_004022731.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181897|gb|ADQ42066.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score = 64.9 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEE--HIDDKSTISN 55
           + + ++G VPQ RER+YI+ FL+ S    FKFP P+ +   + DI++     D+K     
Sbjct: 146 LNSLEYGNVPQNRERVYIVGFLDKSMYEAFKFPEPVSLTVTIHDIIKPWEKKDEKYYYRE 205


>gi|328912201|gb|AEB63797.1| Modification methylase Rho11sI [Bacillus amyloliquefaciens LL3]
          Length = 503

 Score = 64.5 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 34/101 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      +E                              FK+ 
Sbjct: 149 LNSKFFNVPQNRERIYIIGVREDLIENDEWVLEKGRNDVLSKGKKRLKELNIKSFNFKWS 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN----KLWEGHQKRKEN 67
               +  RL +ILEE++D+K  +S     KL E  +K KE 
Sbjct: 209 AQDIVGQRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEK 249


>gi|218248203|ref|YP_002373574.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060473|ref|YP_003138361.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218168681|gb|ACK67418.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256590639|gb|ACV01526.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 460

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEE 45
           + A DFG+PQ R+R++++   N    S  ++FP PL I P++ DIL++
Sbjct: 168 LNAYDFGLPQNRDRVFLVGIRNDIEGSQNYQFPDPLNIHPKVLDILDD 215


>gi|269119458|ref|YP_003307635.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268613336|gb|ACZ07704.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 383

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A D+ +PQRR+R++ +     + ++ FP P+ +K RL D+LE+ + +K  + +
Sbjct: 148 LNAKDYRIPQRRKRVFCVSIF-GNEKYVFPKPVELKLRLRDMLEKEVPEKYYLKD 201


>gi|308185228|ref|YP_003929361.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
 gi|308061148|gb|ADO03044.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
          Length = 368

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 25/85 (29%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH------------ 46
           + A ++G+PQ R RL+++ F        F FP+P  +   + D+L+++            
Sbjct: 187 LDARNYGIPQGRRRLFLVGFKEQEKCANFTFPSPKELTITMQDLLQDNIKEGNLLSKNAI 246

Query: 47  -----------IDDKSTISNKLWEG 60
                      +D+K  +S KL + 
Sbjct: 247 LDTKSFLGGELVDEKYFLSEKLLKY 271


>gi|328553026|gb|AEB23518.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
           amyloliquefaciens TA208]
          Length = 503

 Score = 64.5 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 34/101 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      +E                              FK+ 
Sbjct: 149 LNSKFFNVPQNRERIYIIGVREDLIENDEWIVEKGRNDVLSKGKKRLKELNIKSFNFKWS 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN----KLWEGHQKRKEN 67
               +  RL +ILEE++D+K  +S     KL E  +K KE 
Sbjct: 209 AQDIVGKRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEK 249


>gi|254933776|ref|ZP_05267135.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
 gi|293585336|gb|EFF97368.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
          Length = 325

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK-STISNK 56
           + A D+G+PQ RER++++  L  + EF+FP  +     L D ++  +D     +S  
Sbjct: 143 LNARDYGIPQNRERVFVVSVLGNNKEFQFPEKVKPVKSLKDYIDFDVDPTAYALSEN 199


>gi|332310450|gb|EGJ23545.1| DNA-methyltransferase (Dcm) [Listeria monocytogenes str. Scott A]
          Length = 325

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK-STISNK 56
           + A D+G+PQ RER++++  L  + EF+FP  +     L D ++  +D     +S  
Sbjct: 143 LNARDYGIPQNRERVFVVSVLGNNKEFQFPEKVKPVKSLKDYIDFDVDPTAYALSEN 199


>gi|157265308|ref|YP_001467867.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|157265426|ref|YP_001467984.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
 gi|156905203|gb|ABU96847.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|156905321|gb|ABU96964.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
          Length = 368

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A D+GVPQ+RER++I+    +   +F FP P    P         +  K  +
Sbjct: 162 LNAADYGVPQKRERVFIVGVRSDLPGDFAFPLPTHANP--------QVAAKYGL 207


>gi|327399867|ref|YP_004346898.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
           1112]
 gi|327182537|gb|AEA32972.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
           1112]
          Length = 401

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+Y++ F N      F FP P+ +   L DI++     D+K     
Sbjct: 153 LNGKDYGNIPQNRERIYVVGFDNKEDYDRFDFPAPIKLTKTLHDIIDFHGKKDEKYYYRE 212


>gi|255018626|ref|ZP_05290752.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
           FSL F2-515]
          Length = 172

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK-STISNK 56
           + A DFG+PQ RER++++  L  + EF+FP  +     L D ++  ++     +S  
Sbjct: 110 LNARDFGIPQNRERVFVVSVLGNNKEFQFPEKVEPVKSLKDYIDFDVEPTAYALSEN 166


>gi|1171045|sp|P09915|MTBR_BPRH1 RecName: Full=Modification methylase Rho11sI; Short=M.Rho11sI;
           AltName: Full=Bsu P11s; AltName: Full=Cytosine-specific
           methyltransferase Rho11sI
 gi|579194|emb|CAA28869.1| unnamed protein product [Bacillus phage rho11s]
          Length = 503

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 34/101 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      +E                              FK+ 
Sbjct: 149 LNSKFFNVPQNRERIYIIGVREDLIENDEWVVEKGRNDVLSKGKKRLKELNIKSFNFKWS 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN----KLWEGHQKRKEN 67
               +  RL +ILEE++D+K  +S     KL E  +K KE 
Sbjct: 209 AQDIVGRRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEK 249


>gi|901818|gb|AAA69959.1| 5C-DNA methyltransferase [Bacillus phage H2]
          Length = 503

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 34/101 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      +E                              FK+ 
Sbjct: 149 LNSKFFNVPQNRERIYIIGVREDLIENDEWIVEKGRYDVLSKGKKRLKELNIKSFNFKWS 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN----KLWEGHQKRKEN 67
               +  RL +ILEE++D+K  +S     KL E  +K KE 
Sbjct: 209 AQDIVGKRLREILEEYVDEKYYLSEEKTSKLIEQIEKPKEK 249


>gi|303231468|ref|ZP_07318199.1| modification methylase HhaI family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513905|gb|EFL55916.1| modification methylase HhaI family protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 411

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ FL  S    F FP  + +   L DI++    +D+    + 
Sbjct: 154 LNGKDYGNIPQNRERIYIVGFLEKSAYDAFIFPDEIPLTTSLSDIIDFNGKMDEYYYYTE 213


>gi|118138268|pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
           Sequence Discrimination Of Dna Methyltransferase M.Hhai
          Length = 327

 Score = 64.2 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|229824483|ref|ZP_04450552.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC 51271]
 gi|229786084|gb|EEP22198.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC 51271]
          Length = 406

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDD--KSTIS 54
           +   D G +PQ RER+YI+ F +      F+FP  + +  +L D+++ HI +  K   +
Sbjct: 156 LNGKDHGNIPQNRERIYIVGFRDKQAFDAFQFPESVDLTTKLDDVIDFHIAENAKYYYT 214


>gi|161761159|pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
           Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|160877870|pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
           Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|50513617|pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
           Methyltransferase: An Insight Into Protein-Protein
           Interactions
 gi|50513618|pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
           Methyltransferase: An Insight Into Protein-Protein
           Interactions
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|189096062|pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
           13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|12084381|pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
           Mutant (T250g) In Complex With Dna And Adohcy
 gi|85544394|pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
           Oligonucleotide Containing 2-Aminopurine As A Target
           Base (Gpgc:gmgc) And Sah
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|127455|sp|P05102|MTH1_HAEPH RecName: Full=Modification methylase HhaI; Short=M.HhaI; AltName:
           Full=Cytosine-specific methyltransferase HhaI
 gi|1065144|pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
           And S-Adenosyl-L-Homocysteine
 gi|1942412|pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
           Unmodified Dna And Adohcy
 gi|1942415|pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
           Dna And Adohcy
 gi|2392799|pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
           Hemimethylated Dna And Adohcy
 gi|3660437|pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
           And Dna Containing 4'-Thio-2'deoxycytidine At The Target
 gi|4139672|pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139675|pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139680|pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4558252|pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
           And Hemimethylated Dna Containing
           5,6-Dihydro-5-Azacytosine At The Target
 gi|4699814|pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
           Formed In The Presence Of A Short Nonpsecific Dna
           Oligonucleotide
 gi|24158912|pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
           Covalent Complex With Dna Methyltransferase
 gi|52695513|pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
           Abasic South Carbocyclic Sugar At Its Target Site
 gi|85544385|pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
           Oligonucleotide Containing 2-Aminopurine Adjacent To The
           Target Base (Pcgc:gmgc) And Sah
 gi|85544388|pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
           Containing 2-Aminopurine Opposite To The Target Base (
           Gcgc:gmpc) And Sah
 gi|85544391|pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
           Containing 2-Aminopurine Outside The  Recognition
           Sequence (Paired With G) And Sah
 gi|116667789|pdb|2HR1|A Chain A, Ternary Structure Of Wt M.Hhai C5-Cytosine Dna
           Methyltransferase With Unmodified Dna And Adohcy
 gi|157831356|pdb|1HMY|A Chain A, Crystal Structure Of The Hhal Dna Methyltransferase
           Complexed With S-Adenosyl-L-Methionine
 gi|290560089|pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
           Propane Diol In Place Of The Deoxycytidine Residue
           Targeted For Methylation.
 gi|148949|gb|AAA24989.1| DNA methylase [Haemophilus haemolyticus]
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|159795737|pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
           Observable Precatalytic Intermediates During Dna
           Cytosine Methylation
          Length = 327

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|331270912|ref|YP_004385623.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
 gi|329127304|gb|AEB77248.1| putative cytosine-specific DNA methylotransferase [Clostridium
           botulinum BKT015925]
          Length = 349

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A +FG+PQ RER+++I       + + KF        RL DIL+  +D++  I
Sbjct: 149 LNAKNFGIPQNRERIFVIGIREYIDNKQMKFNEGKDYGYRLKDILQNQVDERFYI 203


>gi|146298415|ref|YP_001193006.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152833|gb|ABQ03687.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
          Length = 329

 Score = 63.8 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDF-----LNPSVEFKFPTPLGIKPRLGDIL-EEHIDDK-ST 52
           +   DFG +P  RER++I+ F      +   EF FP    +   + D++ +E +D+K   
Sbjct: 144 LNTKDFGNIPHNRERIFIVAFDKDYIKDDKFEFHFPEKEDLTKSIKDLITKEKVDEKFYY 203

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLFFEN-SATTNTLSA 92
             +K      +    NK     F      EN S+   TL+A
Sbjct: 204 HEDKYMYDMLRESITNKDRIYQFRRQYVRENKSSVCPTLTA 244


>gi|197302809|ref|ZP_03167861.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
           29176]
 gi|197298046|gb|EDY32594.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL---EEHIDDKSTISN 55
           + A D+G+PQ+RER+Y++ F N      F +P P  +   + + L   EE + D      
Sbjct: 152 LNAVDYGIPQKRERIYMVCFRNDLGITGFSYPKPFKLTRHVENFLLDDEEMVKDLYVERP 211


>gi|148380278|ref|YP_001254819.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148289762|emb|CAL83870.1| putative C-5 cytosine-specific DNA methylase [Clostridium botulinum
           A str. ATCC 3502]
          Length = 340

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + + D+G PQ RER++ I          FKFP P+     +  IL+E++D K    NK 
Sbjct: 152 LNSKDYGSPQSRERMFCISIRKDIDACLFKFPKPMDSIVPINTILDEYVDKKYYCINKY 210


>gi|260890220|ref|ZP_05901483.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
 gi|260859840|gb|EEX74340.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
          Length = 293

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDIL--EEHIDDKST 52
           + A ++G VPQ RER+YII F        F+   PL ++ ++GDI+  ++ +D+K  
Sbjct: 115 LNASEYGNVPQNRERIYIIGFRKKEDYDNFEDIKPLKLEKKIGDIIDFDKKVDEKYY 171


>gi|296126993|ref|YP_003634245.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018809|gb|ADG72046.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 324

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RER+YI+ F       +F FP P+ +   L D L E 
Sbjct: 152 LNASDYGIPQKRERIYIVCFRKDLNIKKFDFPKPIELIKHLEDFLLEE 199


>gi|126658057|ref|ZP_01729209.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
 gi|126620695|gb|EAZ91412.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
          Length = 358

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A  F +PQ RER+YI+ F    L   VEF FP        +   +E +++   +IS  
Sbjct: 181 LDAALFNLPQVRERIYIVGFCRDYLKERVEFNFPVGRKNNVFIDQFIETNVEG-YSISKH 239

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
           L + +  +K++ +         +  +NS     T  + Y+K
Sbjct: 240 LQKTYLFKKDDGR-------PQIVDQNSKVKVKTFVSTYHK 273


>gi|325269502|ref|ZP_08136118.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988121|gb|EGC20088.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 393

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +   D+GVPQ R+R+Y I F   + +FK+P P+ +   + D L++  + +  +  K
Sbjct: 180 LNGKDYGVPQSRDRIYCIGFKKET-DFKYPAPIPLVKTVYDYLQKKFEKRYLLRQK 234


>gi|317500279|ref|ZP_07958506.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087487|ref|ZP_08336423.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898322|gb|EFV20366.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330410467|gb|EGG89898.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGVPQ+RERL  +   N     V F FP     KP L DIL
Sbjct: 227 LNAWDFGVPQKRERLITVGIRNDLVGKVSFSFPKEHNYKPVLRDIL 272


>gi|258511120|ref|YP_003184554.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477846|gb|ACV58165.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 395

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 10/70 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER++I+ F  + ++E+ FP P      L  + ++ +  +       WE
Sbjct: 178 LNAADYGVPQKRERVFIVGFRSDLNIEWSFPNPTHSFDAL--LYDQWVTGEY------WE 229

Query: 60  GHQKRKENNK 69
            H +  + ++
Sbjct: 230 RH-RVAKKHR 238


>gi|330718183|ref|ZP_08312783.1| cytosine-specific methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 414

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           + A ++G +PQ RER+Y++ F +      F FP  + +  +L DI++
Sbjct: 152 LNAKEYGNIPQNRERIYVVGFKDKKAFDNFSFPEKIDLTTKLSDIID 198


>gi|57506196|ref|ZP_00372116.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
           RM3195]
 gi|57015523|gb|EAL52317.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
           RM3195]
          Length = 315

 Score = 62.6 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +   ++G +PQ RER+YII FL+      F FP  + +  ++  +LE+ +D     ++ 
Sbjct: 142 LNTSEYGNIPQNRERIYIIGFLDFHTYESFHFPAKIKLTQKIQHLLEKGVDKSFYYTSH 200


>gi|309789605|ref|ZP_07684186.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
 gi|308228341|gb|EFO81988.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 342

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL----EEHIDDKSTISNK 56
           + A  +GVPQ RERL ++        F FP PL  K  +G+ L         +   ++  
Sbjct: 157 LNAVHYGVPQNRERLIVVG---HKGGFSFPKPLSTKVTVGEALGEMVHSTPPESKFLTPS 213

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFEN---SATTNTLSAR 93
           +     K +  +        Y     +      + TL+ R
Sbjct: 214 MDAYVAKYERAS--------YCKVPRDLHLDKPSRTLTCR 245


>gi|300869073|ref|ZP_07113674.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
 gi|300332930|emb|CBN58870.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
          Length = 345

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT-PLGIKPRLGDILEEHID------DKSTI 53
           + A +FG+PQ RER++II       EFKF        P+L D L+   D       K T+
Sbjct: 141 LNAKNFGLPQHRERIFIIG--TKGKEFKFSKLKTKFPPKLRDFLDVEGDFEILDRSKYTL 198

Query: 54  SN 55
            +
Sbjct: 199 ID 200


>gi|9630267|ref|NP_046694.1| modification methylase [Bacillus phage SPBc2]
 gi|16079084|ref|NP_389907.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309931|ref|ZP_03591778.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314254|ref|ZP_03596059.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319176|ref|ZP_03600470.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323451|ref|ZP_03604745.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|56405062|sp|P68585|MTBP_BACSU RecName: Full=Phi-3T prophage-derived modification methylase
           Phi3TI; Short=M.Phi3TI; AltName: Full=Cytosine-specific
           methyltransferase Phi3TI
 gi|56405063|sp|P68586|MTBP_BPPHT RecName: Full=Modification methylase Phi3TI; Short=M.Phi3TI;
           AltName: Full=Cytosine-specific methyltransferase Phi3TI
 gi|7433506|pir||T12906 modification methylase - Bacillus subtilis phage SPBc2
 gi|215471|gb|AAA32352.1| methyltransferase (ttg start codon) [Bacillus phage phi3T]
 gi|2634418|emb|CAB13917.1| putative SP-beta prophage DNA (cytosine-5-)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025620|gb|AAC13115.1| modification methylase [Bacillus phage SPbeta]
          Length = 443

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 30/85 (35%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      VE                              FK+P
Sbjct: 182 LNSKFFNVPQNRERVYIIGIREDLVENEQWVVGQKRNDVLSKGKKRLQEINIKSFNFKWP 241

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN 55
               +  RL +ILE+ +D+K  ++ 
Sbjct: 242 LQDTVTKRLREILEDFVDEKYYLNE 266


>gi|208289|gb|AAA72678.1| Mtase protein (ttg start codon) [synthetic construct]
          Length = 474

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 30/85 (35%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE------------------------------FKFP 30
           + +  F VPQ RER+YII      VE                              FK+P
Sbjct: 182 LNSKFFNVPQNRERVYIIGIREDLVENEQWVVGQKRNDVLSKGKKRLQEINIKSFNFKWP 241

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN 55
               +  RL +ILE+ +D+K  ++ 
Sbjct: 242 LQDTVTKRLREILEDFVDEKYYLNE 266


>gi|223937258|ref|ZP_03629164.1| DNA-cytosine methyltransferase [bacterium Ellin514]
 gi|223894043|gb|EEF60498.1| DNA-cytosine methyltransferase [bacterium Ellin514]
          Length = 408

 Score = 62.2 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ RER++I+ F +   +E+ FP P           +  +  K   +   WE
Sbjct: 186 LNAADYGVPQFRERVFIVGFRHDLGIEWSFPKPTHSY-------DALVKAKWV-TGDYWE 237

Query: 60  GHQKRKENNKIA 71
            H K  + ++  
Sbjct: 238 QH-KIAKKHRPK 248


>gi|331084584|ref|ZP_08333682.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400654|gb|EGG80261.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 324

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDIL--EEHIDDKSTISN 55
           + A  +G V Q RER+YI+ F +     +F +P  + +   + DI+  E  +D+K   + 
Sbjct: 146 LNAMTYGNVAQNRERIYIVAFRDEEDYEKFHWPLSIPLTNSVKDIIDFENKVDEKYYYTP 205


>gi|326571776|gb|EGE21785.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC7]
          Length = 458

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL- 57
           + + D+GVPQ RER Y +       +  F+FP       +L DI+E   +DKS I +K  
Sbjct: 261 LNSYDYGVPQFRERWYCVAIRKDSDNGRFEFPKNRDRTTKLRDIIESDNNDKSLILSKFE 320

Query: 58  ---WEGH 61
                 H
Sbjct: 321 IDRINYH 327


>gi|227500535|ref|ZP_03930589.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217363|gb|EEI82692.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
           tetradius ATCC 35098]
          Length = 321

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++  L  +  F F      + R L + LE+ + +  TI+   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGAN-NFSFDKLERKETRTLSEFLEKDVSELYTITQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|254442311|ref|ZP_05055787.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198256619|gb|EDY80927.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 338

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 3   ACDFGVPQRRERLYIIDFL----NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + DFGVPQ RER+Y +       N + +F FP        LG  L+   D    +S+  +
Sbjct: 156 SVDFGVPQMRERVYFVGVRKDLVNSNFDFTFPEKAKRVKGLGSYLKSK-DPSYALSDAGY 214

Query: 59  EGHQKR 64
              +K 
Sbjct: 215 AYLEKY 220


>gi|119511452|ref|ZP_01630563.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
 gi|119463917|gb|EAW44843.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
          Length = 433

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-----PT--------------PLGIKPRLGD 41
           + + +FG+PQ R R+Y+I  LN + +F       P                      + D
Sbjct: 148 LNSANFGLPQNRVRIYLIGILNATPKFNLMSDVGPKDSHTYNPQQMSLFHKPKRPATVAD 207

Query: 42  ILEEHIDDKSTISNKLWEGHQK 63
           ILE++   K   S       ++
Sbjct: 208 ILEDNPSSKYDCSPPFINALKR 229


>gi|237739124|ref|ZP_04569605.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
 gi|229423724|gb|EEO38771.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
          Length = 361

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDK 50
           + A ++GV Q+RERL I+   N     + F FPTP   KP L DIL +  + K
Sbjct: 179 LNAWNYGVAQKRERLIIVGIRNDLINKLNFLFPTPHKYKPVLRDILLDCPESK 231


>gi|209524941|ref|ZP_03273486.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494590|gb|EDZ94900.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 442

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFG+PQ R+R++I+      N    F+FP PL + P+L D +E  +  K  I  K 
Sbjct: 160 INASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNLHPKLFDFVEG-VSQKPVIKKKF 218


>gi|159027646|emb|CAO89510.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 728

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL-----EEHIDDK-STIS 54
           + A DFGVPQ RER+ II   N    F         P+L D L      E++D K  T+ 
Sbjct: 146 LNAKDFGVPQNRERIIIIATQNKKFNFNSLKYTSPIPKLRDFLSPQGNFEYLDKKEYTLI 205

Query: 55  NK 56
           + 
Sbjct: 206 DN 207


>gi|218902126|ref|YP_002449960.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
 gi|218538919|gb|ACK91317.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
          Length = 350

 Score = 61.1 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHI---DDKS 51
           + + ++G VPQ RER+YI+ FL    + +F FP P+ +   L  ++  +    D+K 
Sbjct: 153 LNSMEYGNVPQNRERIYIVGFLENELTAKFDFPAPIPLTNTLNTVINRNSSINDEKY 209


>gi|163938820|ref|YP_001643704.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163861017|gb|ABY42076.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
          Length = 350

 Score = 61.1 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHI---DDKS 51
           + + ++G VPQ RER+YI+ FL    + +F FP P+ +   L  ++  +    D+K 
Sbjct: 153 LNSMEYGNVPQNRERIYIVGFLENELTAKFDFPAPIPLTNTLNTVINRNSSINDEKY 209


>gi|257060181|ref|YP_003138069.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256590347|gb|ACV01234.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 336

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DF +P +RER++I+ F +P ++F +   +     L  ILE ++      S ++   
Sbjct: 167 LNALDFALPHKRERIFIVGFRDP-LQFTWKNSIIPMKSLEKILENNVAQSYYASQQIRAN 225

Query: 61  -HQKRKEN--------NKIAG 72
             +K +          ++  G
Sbjct: 226 RLEKYQGKTYQEPTIWHENKG 246


>gi|331091845|ref|ZP_08340677.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402744|gb|EGG82311.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 410

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGVPQ+RERL  +   N     V F FP     KP L D+L
Sbjct: 227 LNAWDFGVPQKRERLITVGIRNDLVGKVSFSFPKEHDYKPVLRDVL 272


>gi|311064356|ref|YP_003971081.1| cytosine methyl transferase Dcm [Bifidobacterium bifidum PRL2010]
 gi|310866675|gb|ADP36044.1| Dcm Cytosine methyl transferase [Bifidobacterium bifidum PRL2010]
          Length = 326

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK------PR-------LGDILEEH 46
           + A D+GVPQ R+R+ I+   N   VEF +P P   K      PR       + DI +  
Sbjct: 154 LNAADYGVPQTRQRVIIVGVRNDLDVEFTYPQPTNSKEGKNGLPRWISVQEAIKDIPDPD 213

Query: 47  -IDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSAR 93
             D  S  +N+  +         K+  + +      +    + T+ AR
Sbjct: 214 GPDADSVPNNEYSQY--------KVKPRNYTGHRITDPDKPSPTILAR 253


>gi|325270473|ref|ZP_08137075.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987196|gb|EGC19177.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 365

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK---PRLGDILEE--HIDDKSTIS 54
           +KA ++G+PQRRER+ I+   +  +  +++P P+  +     L  +++E    D K   S
Sbjct: 158 LKAVEYGIPQRRERVIIVGIRDDLTFNYEYPAPVCTEAEATPLSAVIDELAITDSKYYFS 217

Query: 55  NKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            +  +G  K+ +NN   G      L+   S    T++A
Sbjct: 218 ERAVQG-VKKAKNNMKRG------LWQSLSQPCLTITA 248


>gi|238025826|ref|YP_002910057.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae BGR1]
 gi|237875020|gb|ACR27353.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae BGR1]
          Length = 407

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER++I+ F  +  V++ FP P      L  + ++ +  +       WE
Sbjct: 182 VNAADYGVPQKRERVFIVGFRSDLDVDWSFPRPTHSYDSL--LRDQWVTGEY------WE 233

Query: 60  GHQ--KRKE 66
            HQ  +R  
Sbjct: 234 RHQVPRRAR 242


>gi|23100788|ref|NP_694255.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|22779022|dbj|BAC15289.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 370

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           M   D+G +PQ RER++I+ F +     +F++P  +G+   + ++++  +  DD    + 
Sbjct: 177 MNTMDYGNIPQNRERIFIVGFKDEEKYNKFQWPQKIGLTKSIDNVIDRSKKQDDAYYYTE 236


>gi|166163613|gb|ABY83631.1| DNA methyltransferase Cfr42I [Citrobacter freundii]
          Length = 402

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+G+PQ+RER++I+ F +   +E+ FP P      L  I ++ +          W+
Sbjct: 181 VNAADYGIPQKRERVFIVGFRDDLEIEWSFPKPTHSYDAL--IYDQWVTGDY------WK 232

Query: 60  GH 61
            H
Sbjct: 233 RH 234


>gi|325678044|ref|ZP_08157681.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324110261|gb|EGC04440.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 324

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP----SVEFKFPTPLGIKPRLGDILEEHIDD------K 50
           + A D+GVPQ+RER+ ++   N     + ++ FP P      +   L   + +      +
Sbjct: 155 INAADYGVPQKRERVIMVGIRNDIFQKNGDYSFPQPTNEGKWVP--LSVAVPELAIENQR 212

Query: 51  STISNKLWEGHQKRKENNKIAG 72
              S K  +G +   +NN   G
Sbjct: 213 YYFSEKAVQGMKN-AKNNMKRG 233


>gi|328946253|gb|EGG40397.1| modification methylase Sau96I [Streptococcus sanguinis SK1087]
          Length = 333

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RER+ ++   N     + F++P P   KP L DIL
Sbjct: 151 LNAWDYGVAQKRERMIMVGIRNDLTDKITFEYPEPHDYKPVLKDIL 196


>gi|256821199|ref|YP_003142398.1| DNA-cytosine methyltransferase [Anaerococcus prevotii DSM 20548]
 gi|256799179|gb|ACV29833.1| DNA-cytosine methyltransferase [Anaerococcus prevotii DSM 20548]
          Length = 321

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++  F   +  F        +P L + LE++I +  T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSQFGENNFSFNKLERKETRP-LSEFLEKNISELYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKGIDNSFKGRLKVIKDFSYTI 234


>gi|307140960|ref|ZP_07500316.1| DNA-cytosine methyltransferase [Escherichia coli H736]
 gi|331645014|ref|ZP_08346131.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
 gi|331035989|gb|EGI08227.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
          Length = 413

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGI 35
           + A D+GVPQ+RER++I+ F +   +E+ FP P   
Sbjct: 192 VNAADYGVPQKRERVFIVGFRDDLEIEWSFPKPTHS 227


>gi|113477918|ref|YP_723979.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168966|gb|ABG53506.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 337

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 22/102 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH-----IDDKSTISN 55
           +   DFGVPQ R+R+ +I       EF FP  L  K  +G+ LEE       + K  ++ 
Sbjct: 155 LNTVDFGVPQNRQRVIVIG---HKGEFTFPQVLDKKVTVGEALEEMAFHAPPESKF-LTP 210

Query: 56  KLWEGHQKRKENNKIAGKGFGYGLFFENSAT----TNTLSAR 93
            + +  +K ++ +                        TL+ R
Sbjct: 211 SMDKYIEKYEKASSCK---------QPRDLYLDKPARTLTCR 243


>gi|313668596|ref|YP_004048880.1| DNA cytosine methyltransferase [Neisseria lactamica ST-640]
 gi|313006058|emb|CBN87519.1| DNA cytosine methyltransferase [Neisseria lactamica 020-06]
          Length = 393

 Score = 60.3 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL         +K   + + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKETHSEDRLN-------WEKYV-TGEYWE 221

Query: 60  GH-------QKRKENNKIAGKGFGYGLFFENSATTNTL 90
            H       +   E  +       YG+F        T+
Sbjct: 222 KHNEPKRFNKDIAEKLQKK-----YGIFEPEKKPWQTV 254


>gi|332970702|gb|EGK09683.1| DNA (cytosine-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 197

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           + A +FGVPQ+RER++I+ F +     +F+FP  L  K  L   L+E 
Sbjct: 144 LNASEFGVPQKRERVFIVGFRDDEDFFKFQFPETLPEKIPLKYALDEQ 191


>gi|218900598|ref|YP_002449009.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218544695|gb|ACK97089.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDI-----LEEHIDDKSTIS 54
           + A D+GVPQ R+R++I+       + + +PTP   +    D+     L++ +     +S
Sbjct: 145 LNAADYGVPQTRQRVFIVGVRKDLDLTYSYPTPTHEESPTFDLFNLNALQKWVTIGEALS 204

Query: 55  N--------KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSAR 93
           +         L           ++   G+      + +  + T++AR
Sbjct: 205 DIPEPDEAHNLLNHVYS---QYRLKFNGYIGHRVTDPNKPSPTITAR 248


>gi|167751358|ref|ZP_02423485.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
 gi|167655604|gb|EDR99733.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
          Length = 316

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHI--DDKSTISN 55
            ACD+G+PQ R R YI+ F +      F+FP    ++  L D++++ +   D+  +S 
Sbjct: 144 DACDYGIPQHRTRTYIVAFKSQKACDSFRFPEKCELQKHLFDVIDKTVKGKDRYYVSE 201


>gi|195867949|ref|ZP_03079946.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|195660345|gb|EDX53605.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
          Length = 319

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEAFKYPCPITLTNTIRDVID 192


>gi|171920707|ref|ZP_02931926.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185179015|ref|ZP_02964765.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024024|ref|ZP_02996783.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518336|ref|ZP_03003849.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|188524309|ref|ZP_03004347.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|198273488|ref|ZP_03206024.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550923|ref|ZP_03771872.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551062|ref|ZP_03772008.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903447|gb|EDT49736.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209104|gb|EDU06147.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019052|gb|EDU57092.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997975|gb|EDU67072.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195660089|gb|EDX53469.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|198250008|gb|EDY74788.1| cytosine-specific methyltransferase [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225378877|gb|EEH01242.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380077|gb|EEH02439.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 319

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEAFKYPCPITLTNTIRDVID 192


>gi|34451619|gb|AAQ72366.1| TspRI methylase [Thermus sp. R]
          Length = 431

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT----PLGIKPRLG 40
           + A DFGVPQ R+R++ +    P +EF++P     PLG  P + 
Sbjct: 215 LNAADFGVPQHRKRIFFVGVR-PGIEFRWPRPTHGPLGEHPWVS 257


>gi|2765225|emb|CAA73243.1| methylase [Lactococcus lactis subsp. cremoris]
          Length = 317

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 2   KACDFG-VPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE--EHIDDKSTIS 54
            A ++G +PQ RER+YI+ F N      F+ P  + +K  + D+++  +  DDK   +
Sbjct: 146 NASEYGNIPQNRERIYIVAFKNKKDYANFELPKSIPLKTTIHDVIDFSKKQDDKFYYT 203


>gi|59801568|ref|YP_208280.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae FA
           1090]
 gi|194097887|ref|YP_002000932.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998362|ref|ZP_04718286.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|240113683|ref|ZP_04728173.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           MS11]
 gi|240116425|ref|ZP_04730487.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           PID18]
 gi|240117164|ref|ZP_04731226.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           PID1]
 gi|240125114|ref|ZP_04738000.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494438|ref|ZP_05107609.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae 1291]
 gi|260441646|ref|ZP_05795462.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|268594223|ref|ZP_06128390.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|268599750|ref|ZP_06133917.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae MS11]
 gi|268602094|ref|ZP_06136261.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID18]
 gi|268602852|ref|ZP_06137019.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID1]
 gi|268683710|ref|ZP_06150572.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
           SK-92-679]
 gi|291045024|ref|ZP_06570732.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|10444408|gb|AAG17898.1|AF297971_2 DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae]
 gi|59718463|gb|AAW89868.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae FA
           1090]
 gi|193933177|gb|ACF29001.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513478|gb|EEH62823.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae 1291]
 gi|268547612|gb|EEZ43030.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           35/02]
 gi|268583881|gb|EEZ48557.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae MS11]
 gi|268586225|gb|EEZ50901.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID18]
 gi|268586983|gb|EEZ51659.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae PID1]
 gi|268623994|gb|EEZ56394.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
           SK-92-679]
 gi|291011027|gb|EFE03024.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           DGI2]
 gi|317163651|gb|ADV07192.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 377

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL         +K   + + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKRTHSEDRLN-------WEKYV-TGEYWE 221

Query: 60  GH-------QKRKENNKIAGKGFGYGLFFENSATTNTL 90
            H       +   E  +       YG+F        T+
Sbjct: 222 KHNEPKRFNKDIAEKLQKK-----YGIFEPEKKPWQTV 254


>gi|254445875|ref|ZP_05059351.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198260183|gb|EDY84491.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 321

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ R+RLYI+       S EFKFP   G + RL D+L
Sbjct: 147 LNASDYGVPQARKRLYIVGIRKDLGSGEFKFPETSGARVRLKDLL 191


>gi|261839203|gb|ACX98968.1| DNA-cytosine methyltransferase [Helicobacter pylori 52]
          Length = 309

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISN-K 56
           +   ++  +PQ RER+YI+ FL+ +    F FP  +     + D+LE  + ++      +
Sbjct: 142 LNTYEYSTIPQNRERIYIVGFLDKNHYKRFHFPLKVNHTQSIKDLLEIKVGEEFYYKQYR 201

Query: 57  LWEGHQK 63
            +E  +K
Sbjct: 202 FYETLKK 208


>gi|256544753|ref|ZP_05472125.1| type II restriction-modification system methylation subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399642|gb|EEU13247.1| type II restriction-modification system methylation subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 320

 Score = 59.9 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L D LE+ + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSDFLEKDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|314055145|ref|YP_004063483.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
           virus 2]
 gi|313575036|emb|CBI70049.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
           virus 2]
          Length = 349

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           +KA + GVPQ+RERL+I+   +    F+FP P   +  L DIL
Sbjct: 152 LKAHEHGVPQKRERLFIVGSRDADFTFEFPEPSNNEVGLKDIL 194


>gi|322511205|gb|ADX06517.1| putative C-5 cytosine specific DNA methyltransferase [Organic Lake
           phycodnavirus]
          Length = 384

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1   MKACDF-GVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           +   D  G+P  RER+YI+   + +V  +F    P   K ++ + LE  I +K   ++K
Sbjct: 214 LNTADITGIPHHRERIYIVCIKSKNVFDKFNLDFPKINKKKISEFLEHDIPEKYYYTDK 272


>gi|309380076|emb|CBX21487.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 377

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ+RER+ I+    +  +++KFP     + RL         +K   + + WE
Sbjct: 170 LNAADYGVPQKRERVVIVGIRADLDIDWKFPKETHSEDRLN-------WEKYV-TGEYWE 221

Query: 60  GH-------QKRKENNKIAGKGFGYGLFFENSATTNTL 90
            H       +   E  +       YG+F        T+
Sbjct: 222 KHNEPKRFNKDIAEKLQKK-----YGIFEPEKKPWQTV 254


>gi|322376119|ref|ZP_08050628.1| DNA modification methylase [Streptococcus sp. C300]
 gi|321278887|gb|EFX55931.1| DNA modification methylase [Streptococcus sp. C300]
          Length = 406

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        F+FP  + +   L D++   + +D+      
Sbjct: 158 LNGKDYGNIPQNRERIYIVGFDTKEAYDSFEFPEEIKLTTSLQDVINFGDKLDEVYYYRE 217


>gi|157151353|ref|YP_001449946.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076147|gb|ABV10830.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 406

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        FKFP  + +   L D++   + +D+     +
Sbjct: 158 LNGKDYGNIPQNRERIYIVGFDTKEAYDLFKFPEAIKLTTSLQDVINFGDKLDEVYYYRD 217


>gi|94995093|ref|YP_603191.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548601|gb|ABF38647.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 321

 Score = 59.5 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++  L  +  F F      + R L + LE+++ +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGAN-NFSFDKLERKETRPLSEFLEKNVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|291549830|emb|CBL26092.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 410

 Score = 59.5 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ+RERL  I   N       F FP     KP L DIL
Sbjct: 227 LNAWDYGVPQKRERLITIGIRNDLVEKTSFTFPKEQEYKPVLRDIL 272


>gi|313890914|ref|ZP_07824537.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120711|gb|EFR43827.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 316

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L D LE+ + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSDFLEKDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|193216537|ref|YP_001999779.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
           arthritidis 158L3-1]
 gi|193001860|gb|ACF07075.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
           arthritidis 158L3-1]
          Length = 327

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKP 37
           + + +FGVPQ+RER+Y++ F        F FP P  +  
Sbjct: 152 LNSLNFGVPQKRERIYMVCFRRDLNIKNFSFPKPFKLST 190


>gi|77409601|ref|ZP_00786278.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae COH1]
 gi|77171795|gb|EAO74987.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae COH1]
          Length = 333

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 27/100 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+GV Q+RER+ ++   N  V    F++P P   KP L DIL +        S  +
Sbjct: 151 LNAWDYGVAQKRERMIMVGIRNDLVNMTSFEYPKPHDYKPVLRDILLDCPP-----SQGM 205

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKD 97
               QKRK           + L              Y+KD
Sbjct: 206 QYSEQKRKI----------FELVPPGG---------YWKD 226


>gi|319779706|ref|YP_004130619.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109730|gb|ADU92476.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 329

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + +CD+G+PQ R R++++ F       EFKFP P  +   + DIL   
Sbjct: 152 LNSCDYGIPQSRARIFMVAFREDLKHQEFKFPAPKNLDKYVEDILLPD 199


>gi|153933427|ref|YP_001385281.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153933974|ref|YP_001384769.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935154|ref|YP_001386762.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|153935271|ref|YP_001386815.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|153937696|ref|YP_001388073.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|152929471|gb|ABS34971.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930018|gb|ABS35518.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931068|gb|ABS36567.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|152931185|gb|ABS36684.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|152933610|gb|ABS39109.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
          Length = 315

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-PRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++ I  L+ ++ F F      K P + + LE+  ++K  ++   + 
Sbjct: 149 LNALDFGLPQKRERVFTISCLDGTL-FNFNALERKKAPHIREFLEDTQEEKYIVTQPSML 207

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTNTLS 91
                 K+ +   G  FG G     +   +T++
Sbjct: 208 ------KKMHDKNGN-FG-GRVEVINDCCSTIT 232


>gi|209554428|ref|YP_002284952.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541929|gb|ACI60158.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 319

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE 44
           +   D+G VPQ RER+YI+ FL+      FK+P P+ +   + D+++
Sbjct: 146 LNTMDYGNVPQNRERIYIVGFLSKKAYEVFKYPCPITLTNTIRDVID 192


>gi|169824652|ref|YP_001692263.1| cytosine-specific DNA-methyltransferase [Finegoldia magna ATCC
           29328]
 gi|297588631|ref|ZP_06947274.1| type II restriction-modification system methylation subunit
           [Finegoldia magna ATCC 53516]
 gi|304440076|ref|ZP_07399968.1| type II restriction-modification system methylation subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|167831457|dbj|BAG08373.1| cytosine-specific DNA-methyltransferase [Finegoldia magna ATCC
           29328]
 gi|297574004|gb|EFH92725.1| type II restriction-modification system methylation subunit
           [Finegoldia magna ATCC 53516]
 gi|304371443|gb|EFM25057.1| type II restriction-modification system methylation subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 320

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKSIDNSFRGRLKVIKDFSYTI 234


>gi|326802740|ref|YP_004320558.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651598|gb|AEA01781.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 321

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++  L  +  F F      + R L + LE+ +    T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGAN-SFSFDKLERKETRPLSEFLEKDVSGLYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKGIDNSFKGRLKVIKDFSYTI 234


>gi|332362221|gb|EGJ40021.1| DNA methylase [Streptococcus sanguinis SK1056]
          Length = 412

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        F+FP  + +   L D++   + +D+      
Sbjct: 164 LNGKDYGNIPQNRERIYIVGFDTKEAYDLFEFPEEIKLTTTLQDVINFGDQLDEVYYYRE 223


>gi|239812977|ref|YP_002941924.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
 gi|239809042|gb|ACS26105.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
          Length = 370

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 11/64 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK---------PRLGDILEE-HIDD 49
           + A D+GVPQ+RER++II   N  +++++FP P   +           +G++LE   +++
Sbjct: 172 INAADYGVPQKRERVFIIGVRNDLNIQYEFPEPTHNEDGSDGKLPWVTVGEVLENLQVEE 231

Query: 50  KSTI 53
              I
Sbjct: 232 HHFI 235


>gi|307067513|ref|YP_003876479.1| site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|306409050|gb|ADM84477.1| Site-specific DNA methylase [Streptococcus pneumoniae AP200]
          Length = 321

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++ +L   +  F        +P L + LE  + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSYLGANNFSFNKLERKETRP-LSEFLENDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|189339547|pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
           Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RE +Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKRENIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|189096047|pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
           Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+ ER+Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKNERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|195867543|ref|ZP_03079546.1| type II restriction-modification system methylation subunit
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195867960|ref|ZP_03079957.1| type II restriction-modification system methylation subunit
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660356|gb|EDX53616.1| type II restriction-modification system methylation subunit
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660787|gb|EDX54041.1| type II restriction-modification system methylation subunit
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 323

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKGIDNSFKGRLKVIKDFSYTI 234


>gi|294668765|ref|ZP_06733858.1| modification methylase BsuRI [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309282|gb|EFE50525.1| modification methylase BsuRI [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 313

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG------IKPRLGDILEEHID---DK 50
           + A D+GVPQ R+R++I+   N    E+ FP P            +G+ L    D    +
Sbjct: 141 LNAADYGVPQLRKRIFIVGIRNDIGAEYTFPAPTHGTEGKPPHITIGEALRGMPDWPEGE 200

Query: 51  STISNKLWEGHQKRKE 66
                  W    + + 
Sbjct: 201 YYDRPFHWYYLSRNRR 216


>gi|312902257|ref|ZP_07761465.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|283466064|emb|CBG92839.1| hypothetical protein [Enterococcus casseliflavus]
 gi|310634316|gb|EFQ17599.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 470

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDILEEHIDD 49
           + A ++GV Q+RER+ II   N   E     FKFP     +P L D+L++    
Sbjct: 286 LNAWNYGVAQKRERIVIIGIRNDLFEQQQYSFKFPKEYTYQPVLRDVLKDVPKS 339


>gi|261840146|gb|ACX99911.1| cytosine-specific methyltransferase [Helicobacter pylori 52]
          Length = 343

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A + GV Q+RERL+I+      +  F FP PL  K  L DIL
Sbjct: 151 LNASNHGVAQKRERLFIVGIRKDLNRSFNFPKPLKNKKVLKDIL 194


>gi|257867246|ref|ZP_05646899.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873580|ref|ZP_05653233.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801302|gb|EEV30232.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807744|gb|EEV36566.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
          Length = 470

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDILEEHIDD 49
           + A ++GV Q+RER+ II   N   E     FKFP     +P L D+L++    
Sbjct: 286 LNAWNYGVAQKRERIVIIGIRNDLFEQQQYSFKFPKEYTYQPVLRDVLKDVPKS 339


>gi|209901299|ref|YP_002290938.1| putative DNA methylase [Clostridium phage phiCD27]
 gi|199612180|gb|ACH91353.1| putative DNA methylase [Clostridium phage phiCD27]
          Length = 276

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDI 42
           + + +FGVPQ RER++I+  F   S    FP     +  L  +
Sbjct: 150 LNSKNFGVPQNRERIFIVGHFRGRSTRKVFPIERKSRKNLEQL 192


>gi|284051619|ref|ZP_06381829.1| DNA-cytosine methyltransferase [Arthrospira platensis str. Paraca]
          Length = 443

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+      N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|313888225|ref|ZP_07821897.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845756|gb|EFR33145.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 321

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKGIDNSFKGRLKVIKDFSYTI 234


>gi|126698504|ref|YP_001087401.1| putative DNA methylase [Clostridium difficile 630]
 gi|115249941|emb|CAJ67761.1| putative phage DNA modification methylase [Clostridium difficile]
          Length = 357

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDI 42
           + + +FGVPQ RER++I+  F   S    FP     +  L  +
Sbjct: 150 LNSKNFGVPQNRERIFIVGHFRGRSTRKVFPIERKSRKNLEQL 192


>gi|307710826|ref|ZP_07647254.1| DNA-cytosine methyltransferase family protein [Streptococcus mitis
           SK321]
 gi|307617432|gb|EFN96604.1| DNA-cytosine methyltransferase family protein [Streptococcus mitis
           SK321]
          Length = 406

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        F+FP  + +   L D++   + +D+      
Sbjct: 158 LNGKDYGNIPQNRERIYIVGFDTKEAYDLFEFPEEIKLTTSLQDVINFGDKLDEVYYYRE 217


>gi|291570812|dbj|BAI93084.1| cytosine-specific DNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 443

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+      N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|158431504|pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
           Methyltransferase With Unmodified Dna And Adohcy
          Length = 327

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQ+RE +Y+I F N      F+FP P  +   + D+L   
Sbjct: 152 LNALDYGIPQKREAIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPD 199


>gi|254825117|ref|ZP_05230118.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293594360|gb|EFG02121.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 326

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           +   DFG+PQ+RER+Y +  L+ P  +F       ++P + + LE  +DD  TI 
Sbjct: 149 LNPMDFGIPQKRERIYTVSVLSGPQFDFSKLKKEPMRP-INEFLETDVDDIYTIK 202


>gi|302380785|ref|ZP_07269249.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311385|gb|EFK93402.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 321

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++  L  +  F F      + R L + LE+ +    T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGAN-SFSFDKLERKETRPLSEFLEKDVSGLYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|20385949|gb|AAM21516.1|AF438205_2 GST-M.SPRX methyltransferase fusion protein [Mutation screening
           vector pSPRX]
          Length = 659

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 30/85 (35%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP------------------------------SVEFKFP 30
           + +  F VPQ RERLYII                                   S  F++ 
Sbjct: 375 LNSKFFNVPQNRERLYIIGIREDLIKNEEWSLDFKRKDILQKGKQRLVELDIKSFNFRWT 434

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN 55
                  RL D+LEE++D+K  ++ 
Sbjct: 435 AQSAATKRLKDLLEEYVDEKYYLNE 459


>gi|108563484|ref|YP_627800.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107837257|gb|ABF85126.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 313

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK--L 57
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 139 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFNDFLDAD-NECYLDTNNATF 197

Query: 58  WEGHQKRKENNK 69
               + R  +N+
Sbjct: 198 QRYLRNRYNHNR 209


>gi|306824635|ref|ZP_07457980.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433203|gb|EFM36174.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 410

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        F+FP  + +   L D++   + +D+      
Sbjct: 158 LNGKDYGNIPQNRERIYIVGFDTKEAYDLFEFPEEIKLTTTLQDVINFGDKLDEVYYYRE 217


>gi|216171|gb|AAA32604.1| DNA methyltransferase [Bacillus phage SPR]
          Length = 439

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 30/85 (35%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP------------------------------SVEFKFP 30
           + +  F VPQ RERLYII                                   S  F++ 
Sbjct: 149 LNSKFFNVPQNRERLYIIGIREDLIKNEEWSLDFKRKDILQKGKQRLVELDIKSFNFRWT 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN 55
                  RL D+LEE++D+K  ++ 
Sbjct: 209 AQSAATKRLKDLLEEYVDEKYYLNE 233


>gi|322392562|ref|ZP_08066022.1| DNA methylase [Streptococcus peroris ATCC 700780]
 gi|321144554|gb|EFX39955.1| DNA methylase [Streptococcus peroris ATCC 700780]
          Length = 406

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILE--EHIDDKSTISN 55
           +   D+G +PQ RER+YI+ F        F+FP  + +   L D++   + +D+      
Sbjct: 158 LNGKDYGNIPQNRERIYIVGFDTKEAYDLFEFPEEIKLTTSLQDVINFGDQLDEVYYYRE 217


>gi|127431|sp|P00476|MTBS_BPSPR RecName: Full=Modification methylase SPRI; Short=M.SPRI; AltName:
           Full=Cytosine-specific methyltransferase SPRI
 gi|224091|prf||1010250A methyltransferase
          Length = 439

 Score = 58.4 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 30/85 (35%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP------------------------------SVEFKFP 30
           + +  F VPQ RERLYII                                   S  F++ 
Sbjct: 149 LNSKFFNVPQNRERLYIIGIREDLIKNEEWSLDFKRKDILQKGKQRLVELDIKSFNFRWT 208

Query: 31  TPLGIKPRLGDILEEHIDDKSTISN 55
                  RL D+LEE++D+K  ++ 
Sbjct: 209 AQSAATKRLKDLLEEYVDEKYYLNE 233


>gi|282883032|ref|ZP_06291633.1| type II restriction-modification system methylation subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281297089|gb|EFA89584.1| type II restriction-modification system methylation subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 312

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+++ +  T++   + 
Sbjct: 151 LNAVDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKNVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|228899601|ref|ZP_04063856.1| Modification methylase SinI [Bacillus thuringiensis IBL 4222]
 gi|228860031|gb|EEN04436.1| Modification methylase SinI [Bacillus thuringiensis IBL 4222]
          Length = 362

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A ++GVPQ+RER++II         F+FP P   +
Sbjct: 171 LNAANYGVPQKRERVFIIGIRQDLKKTFEFPEPTHNE 207


>gi|134287405|ref|YP_001110788.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
           phiC2]
 gi|93117243|gb|ABE99533.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
           phiC2]
          Length = 316

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDI 42
           + + +FGVPQ RER++I+  F   S    FP     +  L  +
Sbjct: 133 LNSKNFGVPQNRERIFIVGHFRGRSTRKVFPIERKSRKNLEQL 175


>gi|300813808|ref|ZP_07094115.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512098|gb|EFK39291.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 321

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|240128365|ref|ZP_04741026.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686763|ref|ZP_06153625.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627047|gb|EEZ59447.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 423

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|79835495|gb|ABB52098.1| Mod [Arthrospira platensis]
          Length = 412

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILE 44
           + A DFG+PQ R+R++I+      N    F+FP PL   P+L + +E
Sbjct: 160 LNASDFGLPQDRDRVFIVGIRRDINQGQNFQFPQPLNQHPQLFNFVE 206


>gi|59801103|ref|YP_207815.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA 1090]
 gi|121634967|ref|YP_975212.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|194098793|ref|YP_002001855.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999085|ref|ZP_04719009.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           35/02]
 gi|240014008|ref|ZP_04720921.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           DGI18]
 gi|240016449|ref|ZP_04722989.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA6140]
 gi|240080568|ref|ZP_04725111.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA19]
 gi|240113063|ref|ZP_04727553.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           MS11]
 gi|240115818|ref|ZP_04729880.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID18]
 gi|240118116|ref|ZP_04732178.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID1]
 gi|240121574|ref|ZP_04734536.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID24-1]
 gi|240123666|ref|ZP_04736622.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           PID332]
 gi|240125856|ref|ZP_04738742.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493863|ref|ZP_05107034.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440365|ref|ZP_05794181.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           DGI2]
 gi|268594923|ref|ZP_06129090.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268596698|ref|ZP_06130865.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268599147|ref|ZP_06133314.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268601493|ref|ZP_06135660.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268603831|ref|ZP_06137998.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268682295|ref|ZP_06149157.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268684453|ref|ZP_06151315.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043662|ref|ZP_06569378.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|293398965|ref|ZP_06643130.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717998|gb|AAW89403.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           FA 1090]
 gi|120866673|emb|CAM10425.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|193934083|gb|ACF29907.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512903|gb|EEH62248.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548312|gb|EEZ43730.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268550486|gb|EEZ45505.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268583278|gb|EEZ47954.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268585624|gb|EEZ50300.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268587962|gb|EEZ52638.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268622579|gb|EEZ54979.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268624737|gb|EEZ57137.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012125|gb|EFE04114.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|291610379|gb|EFF39489.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164377|gb|ADV07918.1| putative DNA modification methylase (N.MgoV) [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 423

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|218768275|ref|YP_002342787.1| DNA modification methylase [Neisseria meningitidis Z2491]
 gi|121052283|emb|CAM08611.1| DNA modification methylase [Neisseria meningitidis Z2491]
          Length = 423

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|308061704|gb|ADO03592.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
 gi|308063214|gb|ADO05101.1| DNA-cytosine methyltransferase [Helicobacter pylori Sat464]
 gi|317180749|dbj|BAJ58535.1| DNA-cytosine methyltransferase [Helicobacter pylori F32]
          Length = 309

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISN-K 56
           +   ++  +PQ RER+YII FL+ +    F FP  +     + D+LE  + ++      +
Sbjct: 142 LNTYEYSTIPQNRERIYIIGFLDKNHYKRFHFPLKINHTQSIKDLLEIKVGEEFYYKQYR 201

Query: 57  LWEGHQK 63
            +E  +K
Sbjct: 202 FYETLKK 208


>gi|227484740|ref|ZP_03915056.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237262|gb|EEI87277.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 321

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|188527161|ref|YP_001909848.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
 gi|188143401|gb|ACD47818.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
          Length = 309

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISN-K 56
           +   ++  +PQ RER+YII FL+ +    F FP  +     + D+LE  + ++      +
Sbjct: 142 LNTYEYSTIPQNRERIYIIGFLDKNHYKRFHFPLKINHTQSIKDLLEIKVGEEFYYKQYR 201

Query: 57  LWEGHQK 63
            +E  +K
Sbjct: 202 FYETLKK 208


>gi|317181696|dbj|BAJ59480.1| DNA-cytosine methyltransferase [Helicobacter pylori F57]
          Length = 309

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISN-K 56
           +   ++  +PQ RER+YII FL+ +    F FP  +     + D+LE  + ++      +
Sbjct: 142 LNTYEYSTIPQNRERIYIIGFLDKNHYKRFHFPLKINHTQSIKDLLEIKVGEEFYYKQYR 201

Query: 57  LWEGHQK 63
            +E  +K
Sbjct: 202 FYETLKK 208


>gi|325849320|ref|ZP_08170737.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480182|gb|EGC83251.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 321

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+ + +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKDVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|317008995|gb|ADU79575.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 309

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           +   ++  +PQ RER+YII FL+ +    F FP  +     + D+LE  + ++    
Sbjct: 142 LNTYEYSTIPQNRERIYIIGFLDENHYKRFHFPLKINHTQSIKDLLEIKVGEEFYYK 198


>gi|168335325|ref|ZP_02693422.1| DNA-cytosine methyltransferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 324

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q R+R++ I F    +++F+FP P   KP L DIL
Sbjct: 143 LNANDYGVAQDRKRVFYIGFRKDLNIKFEFPKPQEYKPVLRDIL 186


>gi|313677762|ref|YP_004055758.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944460|gb|ADR23650.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 378

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 16/98 (16%)

Query: 2   KACDFGVPQRRERLYIIDFLN--PSVEFKFPTPL---GIKPRLGDILEEHI--DDKSTIS 54
            A ++GVPQ+RER++II F N      F FP P      K +L +++++    D+K   S
Sbjct: 166 NASEYGVPQKRERVFIIGFKNYEDFAYFNFPQPTTLNDSKVKLKEVIDKKANKDEKWFFS 225

Query: 55  NKLWEGHQK-RKENNKIAGKGFGYGLFFENSATTNTLS 91
            +  +G  + +K+ NK   +              NT+S
Sbjct: 226 QRAVDGMMRVQKKMNKGRDQN--------LEEPCNTIS 255


>gi|261400634|ref|ZP_05986759.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|313668389|ref|YP_004048673.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|1709164|sp|P50182|MTN4_NEILA RecName: Full=Modification methylase NlaIV; Short=M.NlaIV; AltName:
           Full=Cytosine-specific methyltransferase NlaIV
 gi|476227|gb|AAA53237.1| M.NlaIV [Neisseria lactamica]
 gi|269209540|gb|EEZ75995.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|313005851|emb|CBN87307.1| DNA modification methylase [Neisseria lactamica 020-06]
          Length = 423

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|210135280|ref|YP_002301719.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133248|gb|ACJ08239.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 315

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISN-KLW 58
           + + DF + Q RER+YI+ F       F FP  L       D L+   +    I+N    
Sbjct: 139 LNSADFQLAQNRERIYIVGFRKDLKHPFNFPLGLANDYYFKDFLDADNECYLDINNATFQ 198

Query: 59  EGHQKRKENNK 69
           +    +  +N+
Sbjct: 199 KYLHNKYNHNR 209


>gi|304387455|ref|ZP_07369646.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338548|gb|EFM04667.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 273

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|254673505|emb|CBA08927.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
          Length = 273

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|325846341|ref|ZP_08169331.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481605|gb|EGC84644.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 315

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+++ +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKNVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|303233873|ref|ZP_07320524.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
 gi|302495017|gb|EFL54772.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
          Length = 315

 Score = 57.6 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+RER++++      +  F        +P L + LE+++ +  T++   + 
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLEKNVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|254410261|ref|ZP_05024041.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183297|gb|EDX78281.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 384

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL------EEHIDDKSTIS 54
           + + DFGVPQ RER+ I+   N    F          +L + L      E    D  T+ 
Sbjct: 144 LNSKDFGVPQNRERIIIVATKNKQFNFNKLKKNKCVAKLKNFLFNSENFEYLEPDSYTLI 203

Query: 55  NK 56
           +K
Sbjct: 204 DK 205


>gi|261379604|ref|ZP_05984177.1| modification methylase EcoRII [Neisseria subflava NJ9703]
 gi|284798084|gb|EFC53431.1| modification methylase EcoRII [Neisseria subflava NJ9703]
          Length = 320

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 1   MKACDF-GVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDK--STI 53
           M   ++  +PQ RER++I+ F         +F FP  + +   + DIL++   +      
Sbjct: 149 MNTAEYANIPQNRERIFIVAFNKDHNFDTSKFDFPKKIKLTKSIHDILDKEKQEDIYYYD 208

Query: 54  SNKLWEGHQK 63
            +K     ++
Sbjct: 209 KSKYISQLKE 218


>gi|254671396|emb|CBA08870.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha153]
          Length = 157

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 42  LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 96

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 97  LLKKFPPSELYGK 109


>gi|160934346|ref|ZP_02081733.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
 gi|156867019|gb|EDO60391.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
          Length = 433

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I   N     ++F FP P   KP L DIL
Sbjct: 251 LNAWDYGVAQKRERLITIGIRNDLVQKIKFDFPAPHKYKPVLRDIL 296


>gi|309378580|emb|CBX22758.1| DNA cytosine methyltransferase M.NlaIV [Neisseria lactamica
           Y92-1009]
          Length = 380

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 115 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTPS--PKLKNILESGLP---TESSPFIKK 169

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 170 LLKKFPPSELYGK 182


>gi|161870123|ref|YP_001599293.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|225075874|ref|ZP_03719073.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
           NRL30031/H210]
 gi|296313674|ref|ZP_06863615.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|161595676|gb|ABX73336.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|224952820|gb|EEG34029.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
           NRL30031/H210]
 gi|296839734|gb|EFH23672.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 423

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|15676920|ref|NP_274067.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|7226272|gb|AAF41432.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|325136241|gb|EGC58849.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325202033|gb|ADY97487.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325208214|gb|ADZ03666.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 423

 Score = 57.6 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|290343528|ref|YP_003494895.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
 gi|260160943|emb|CAY39643.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
          Length = 351

 Score = 57.2 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           +KA + GVPQ+RERL+I+   +    F FP P      L DIL
Sbjct: 154 LKAHEHGVPQKRERLFIVGSRDVDFTFDFPEPSANDVGLKDIL 196


>gi|77918034|ref|YP_355849.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
           2380]
 gi|77544117|gb|ABA87679.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
           2380]
          Length = 405

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           + A ++GVPQ RER++I+   +   EF+FP P    P 
Sbjct: 163 LNAANYGVPQVRERVFIVGSRDGK-EFQFPEPTHQNPE 199


>gi|325130383|gb|EGC53149.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
          Length = 425

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T L   P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETTLS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|261838450|gb|ACX98216.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 318

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAD-NECYLDTNN--A 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 TFQRY 206


>gi|316984658|gb|EFV63622.1| modification methylase NlaIV [Neisseria meningitidis H44/76]
          Length = 171

 Score = 57.2 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 56  LNAKDFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 110

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 111 LLKKFPPSELYGK 123


>gi|330998524|ref|ZP_08322345.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329568255|gb|EGG50071.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 379

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQRRER+ I+   N  +V + FP     +       E  + DK   +   WE
Sbjct: 171 LNAADYGVPQRRERVVIVGIRNDLNVAWNFPEGTHSQ-------EALLWDKYV-TGSYWE 222

Query: 60  GH 61
            H
Sbjct: 223 RH 224


>gi|254411906|ref|ZP_05025682.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181628|gb|EDX76616.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 456

 Score = 57.2 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + + DFG+PQ R+R++I+   N    S  F FP PLG   +L D++
Sbjct: 173 LNSYDFGLPQDRDRVFIVGIRNDIEKSKSFDFPKPLGKPIKLYDVI 218


>gi|15894505|ref|NP_347854.1| DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum ATCC 824]
 gi|15024146|gb|AAK79194.1|AE007635_8 DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508636|gb|ADZ20272.1| DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum EA 2018]
          Length = 314

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLY-IIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A DFG+PQRRER++ I        +F       ++P L   L+ ++D+  T++
Sbjct: 154 LNAMDFGLPQRRERVFTISCLDGKKFDFDKLEHRKLRP-LSSFLQTNVDEYYTVT 207


>gi|325979448|ref|YP_004289164.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325179376|emb|CBZ49420.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 333

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A DFGV Q+RER+ ++   N       F++P     KP L D+L
Sbjct: 151 LNAWDFGVAQKRERMIMVGIRNDLANKTSFEYPEAHAYKPVLRDVL 196


>gi|325478388|gb|EGC81503.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 321

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+RER++++      +  F        +P L + LE  + +  T++     
Sbjct: 151 LNAMDFGIPQKRERIFVVSCLGANNFSFNKLERKETRP-LSEFLENDVSELYTMTQPYML 209

Query: 60  GHQKRKENNKIAG-----KGFGYGL 79
               +  +N   G     K F Y +
Sbjct: 210 KFLNKGIDNSFRGRLKVIKAFSYTI 234


>gi|291530357|emb|CBK95942.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 317

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 2   KACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHI-DDKSTISNKLW 58
            ACD+G+PQ R R YI+ F +   SV F FP    ++  + D++++    DKS   +   
Sbjct: 144 DACDYGIPQHRTRTYIVAFRDFAKSVLFDFPQKQQLQKHIFDVIDKRTKADKSFYLDC-- 201

Query: 59  EGHQKRKENNKIAGKG----FG-YGLFFENSATTNTLSA 92
              Q  K    I        F  YG+         TL A
Sbjct: 202 NSRQYYKMKQSIDDNNQIYRFSDYGIQKSKDGICFTLKA 240


>gi|317177871|dbj|BAJ55660.1| Type II DNA modification enzyme [Helicobacter pylori F16]
          Length = 319

 Score = 56.8 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHSFNFPLGLANDYCFKDFLDAD-NECYLDTNN--A 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 AFQRY 206


>gi|306821027|ref|ZP_07454646.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550968|gb|EFM38940.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 317

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A DFG+PQ+RER++++  L  +  F F     I  + + + LE+ + +  
Sbjct: 156 LNAMDFGIPQKRERIFVVSILGKN-NFDFEKLEKIPTKHISEFLEKEVSEIY 206


>gi|297380299|gb|ADI35186.1| DNA-cytosine methyltransferase [Helicobacter pylori v225d]
          Length = 264

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 91  LNSADFQLAQKRERLYIVGFRKDLKHPFDFPLGLANDYCFKDFLDAD-NECYLDTNN--A 147

Query: 60  GHQKR 64
             Q+ 
Sbjct: 148 AFQRY 152


>gi|317014507|gb|ADU81943.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           Gambia94/24]
          Length = 318

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   D++  + +    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDA--DNEYYL-DVSNA 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 TFQRY 206


>gi|163937935|ref|YP_001642821.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163865790|gb|ABY46846.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis KBAB4]
          Length = 444

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 28/83 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP----------------------------SVEFKFPTP 32
           + +  F V Q RER++++                                 S  F FP  
Sbjct: 185 INSKYFDVAQNRERIFVVCVRKDLVQSEEWRIKGKNVVANCKRNLLNLGVQSFNFDFPAQ 244

Query: 33  LGIKPRLGDILEEHIDDKSTISN 55
             +   L DILEE +D +  I  
Sbjct: 245 EDVNVSLIDILEESVDKRFYIKE 267


>gi|119512301|ref|ZP_01631388.1| DNA modification methylase [Nodularia spumigena CCY9414]
 gi|119463081|gb|EAW44031.1| DNA modification methylase [Nodularia spumigena CCY9414]
          Length = 502

 Score = 56.8 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDIL----EEHIDDKSTIS 54
           + + D+GVPQ R R+YII F       +F  P     K +LGDIL    E+ ID++    
Sbjct: 147 INSFDYGVPQNRIRVYIIGFHKQEYLEKFALPKQTDKKRKLGDILGITSEQKIDNQVIER 206

Query: 55  NKL 57
           +  
Sbjct: 207 DIF 209


>gi|254779148|ref|YP_003057253.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
           [Helicobacter pylori B38]
 gi|254001059|emb|CAX29005.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
           [Helicobacter pylori B38]
          Length = 348

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQVRERVILVGVLKRFKQKFHFPKPIKTHFSLKDAL 188


>gi|172036128|ref|YP_001802629.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171697582|gb|ACB50563.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 349

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 1   MKACDFGVPQRRERLYIIDF----LNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A  F +PQ RER+Y++ F    L   V+F FP        +   +E++I+   +IS  
Sbjct: 180 LDAALFDLPQVRERIYLVGFCREYLKERVDFTFPMGQTNDVYIDRFIEKNIEG-YSISKH 238

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSAT-TNTLSARYYK 96
           L + +  +K++ +         +  + S     T  + Y+K
Sbjct: 239 LQQSYLFKKDDGR-------PQIVDQTSQVKVKTFVSTYHK 272


>gi|109947180|ref|YP_664408.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714401|emb|CAJ99409.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis str.
           Sheeba]
          Length = 315

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F      +F FP  L       D L+   ++    +N    
Sbjct: 139 LNSADFQLAQKRERLYIVGFRKDLKHQFNFPLGLANDYCFKDFLDAD-NECYLNTNN--A 195

Query: 60  GHQKR 64
             Q+ 
Sbjct: 196 AFQRY 200


>gi|67920370|ref|ZP_00513890.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67857854|gb|EAM53093.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 339

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNK 56
           + + DFGVPQ RERL ++       +F+FP     +      LG++  + + D   ++  
Sbjct: 157 LNSVDFGVPQNRERLMVVG---HRGKFQFPQISAKRITAGEALGELAFQVLPDSKFLTPS 213

Query: 57  LWEGHQKRKE 66
           + +   K ++
Sbjct: 214 MDKYIAKYEK 223


>gi|291525029|emb|CBK90616.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 337

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK-PRLGDILEEHIDDKSTISN 55
            +  + VPQ R+R  ++   N     F FP       P+L D LE+ + +K  + +
Sbjct: 182 NSKYWNVPQNRDRYAVVGTRNKKNLTFTFPKEQHEFVPKLSDYLEKDVPEKYYLPD 237


>gi|239625877|ref|ZP_04668908.1| methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520107|gb|EEQ59973.1| methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 338

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK-PRLGDILEEHIDDKSTISN 55
            +  + VPQ R+R  ++   N     F FP       P+L D LE+ + +K  + +
Sbjct: 182 NSKYWNVPQNRDRYAVVGTRNKKNLTFTFPKEQHEFVPKLSDYLEKDVPEKYYLPD 237


>gi|167043721|gb|ABZ08413.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
           crenarchaeote HF4000_APKG3B16]
          Length = 377

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDK-STISN 55
           + A D+G+PQ R+R++I+        EF+FP P       G  L+ ++  K   I +
Sbjct: 167 LDAKDYGLPQDRQRIFIVGVRKDLEYEFEFPKPTH-----GPGLKPYVTMKDYGIKD 218


>gi|170077805|ref|YP_001734443.1| Type II cytosine-5 DNA methyltransferase [Synechococcus sp. PCC
           7002]
 gi|462645|sp|P34882|MTAA_SYNP2 RecName: Full=Modification methylase AquI subunit alpha;
           Short=M.AquI subunit alpha; Short=M.AquiA; AltName:
           Full=Cytosine-specific methyltransferase AquI subunit
           alpha
 gi|2126509|pir||I39659 modification methylase AquI, alpha protein - Synechococcus sp. (PCC
           7002)
 gi|142180|gb|AAA22067.1| M.AquI alpha protein [Synechococcus sp. PCC 7002]
 gi|169885474|gb|ACA99187.1| DNA-cytosine methyltransferase [Synechococcus sp. PCC 7002]
          Length = 248

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A DFGVPQ RER++I+        F+FP P  
Sbjct: 161 LNAADFGVPQFRERVFIVG-NRLGKTFQFPEPTH 193


>gi|308062397|gb|ADO04285.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
          Length = 318

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAD-NECYLDTNN--A 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 AFQRY 206


>gi|167920593|ref|ZP_02507684.1| cytosine-specific DNA methylase [Burkholderia pseudomallei BCC215]
          Length = 454

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           +FG+PQ RER+YI+    P   F++P  +     +  IL+++ DD
Sbjct: 153 NFGIPQIRERVYIVGSTEPLTSFQWPEMIDATTSIETILDKNPDD 197


>gi|108562472|ref|YP_626788.1| cytosine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107836245|gb|ABF84114.1| cytosine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 355

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +FK   P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFKLLEPSQS 187


>gi|261839852|gb|ACX99617.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori 52]
          Length = 319

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQNRERLYIVGFRKDLKHHFVFPLGLANDYCFKDFLDAD 191


>gi|325912423|ref|ZP_08174818.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
 gi|325475765|gb|EGC78936.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
          Length = 314

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDIL 43
           +   D+GVPQ+RER+Y++ F N      F FP P  +   + D L
Sbjct: 131 LNPVDYGVPQKRERIYMLCFRNDINREVFTFPRPFKLNKFVEDFL 175


>gi|188527268|ref|YP_001909955.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
 gi|188143508|gb|ACD47925.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
          Length = 348

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|320326171|gb|EFW82226.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 404

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + A D+GVPQ+RER+++I F +   VE+ FP P      L  I ++ +    
Sbjct: 181 VNAADYGVPQKRERVFLIGFRDDLEVEWSFPAPTHSYDAL--IHDQWVTGSY 230


>gi|317182374|dbj|BAJ60158.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 318

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAD-NECYLDTNN--A 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 AFQRY 206


>gi|309776146|ref|ZP_07671137.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916097|gb|EFP61846.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 456

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A D G+PQ RER ++I  L     ++FP    +  ++ D+LEE +D +   +
Sbjct: 224 VDAADHGIPQHRERCFMISILGE-YSYRFPAGRKLHIQMKDLLEEKVDIRYFQT 276


>gi|90592696|ref|YP_529611.1| hypothetical protein CDBPCV119_gp60 [Clostridium phage phi CD119]
 gi|71482543|gb|AAX53484.1| hypothetical protein [Clostridium phage phi CD119]
          Length = 260

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDI 42
           + + +FGVPQ RER++I+  F   S    FP        L  +
Sbjct: 157 LNSKNFGVPQNRERIFIVGHFRGRSTRKVFPIERKSGKNLEQL 199


>gi|308063322|gb|ADO05209.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Sat464]
          Length = 348

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|332673919|gb|AEE70736.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 83]
          Length = 319

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+ + ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAN-NECYLDTNN--A 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 AFQRY 206


>gi|317180853|dbj|BAJ58639.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 312

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK--L 57
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 139 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAD-NECYLDTNNAAF 197

Query: 58  WEGHQKRKENNK 69
                 +  +N+
Sbjct: 198 QRYLHNKYNHNR 209


>gi|331002102|ref|ZP_08325621.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411196|gb|EGG90612.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A DFG+PQ+RER++++  L  +  F F      KP+ + + LE+ +    
Sbjct: 145 LNAMDFGIPQKRERIFVVSILGKN-NFDFNKLNKTKPKDISEFLEKDVSSVY 195


>gi|254409526|ref|ZP_05023307.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183523|gb|EDX78506.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 437

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 19/76 (25%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF------PT-------------PLGIKPRLGD 41
           + +  FG+PQ R RLY++  L  S +F+       P              PL     + D
Sbjct: 148 LNSAHFGLPQNRVRLYMVGILGASPKFELISDLGPPDSHSYNCQQLSLFNPLTQPVAVAD 207

Query: 42  ILEEHIDDKSTISNKL 57
           ILE++ D K   S + 
Sbjct: 208 ILEDNPDSKYDCSPEF 223


>gi|317057160|ref|YP_004105627.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449429|gb|ADU22993.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 407

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I   N     + F FPTP   KP L D+L
Sbjct: 224 LNAWDYGVAQKRERLITIGIRNNLTDKISFSFPTPHEYKPVLRDVL 269


>gi|227539355|ref|ZP_03969404.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240668|gb|EEI90683.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 386

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           + + DFGVPQ RER++ +      ++ K   P        
Sbjct: 171 LNSLDFGVPQHRERIFFVGIRRKILDKKIVEPSSFGKWFP 210


>gi|217034658|ref|ZP_03440063.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
 gi|216942866|gb|EEC22357.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
          Length = 312

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK--L 57
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 139 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLVNDYCFKDFLDAD-NECYLDTNNAAF 197

Query: 58  WEGHQKRKENNK 69
               + +  +N+
Sbjct: 198 QRYLRNKYNHNR 209


>gi|42783651|ref|NP_980898.1| DNA-cytosine methyltransferase family protein [Bacillus cereus ATCC
           10987]
 gi|42739580|gb|AAS43506.1| DNA-cytosine methyltransferase family protein [Bacillus cereus ATCC
           10987]
          Length = 362

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A ++GVPQ+RER++II         F FP P   +
Sbjct: 171 LNAANYGVPQKRERVFIIGVRQDLEKTFVFPEPTHNE 207


>gi|317181803|dbj|BAJ59587.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 351

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|212639806|ref|YP_002316326.1| Site-specific DNA methylase [Anoxybacillus flavithermus WK1]
 gi|212561286|gb|ACJ34341.1| Site-specific DNA methylase [Anoxybacillus flavithermus WK1]
          Length = 469

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLG------IKPRLGDILEE 45
           +KA D+GVPQ RER+++I    +    F++P P            +GD L +
Sbjct: 212 LKASDYGVPQHRERIFLIGINRDYDATFRYPLPTHGPDRTFPYVTVGDALFD 263


>gi|111607698|gb|ABH10736.1| DNA methyltransferase [Flavobacterium sp. 4H]
          Length = 408

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDK--STISNK 56
           A    VPQ RER++I+ F    V    +F+FP P+ +   + D L++   D       + 
Sbjct: 241 ATHANVPQNRERIFIVAFDPKQVKNYSKFEFPKPIKLTKTIHDFLDKEKQDDIFYYKKDH 300


>gi|315586449|gb|ADU40830.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori
           35A]
          Length = 351

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|308184861|ref|YP_003928994.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060781|gb|ADO02677.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 318

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQNRERLYIVGFRKDLKYPFNFPLGLANDYCFNDFLDAD 191


>gi|188526860|ref|YP_001909547.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
           Shi470]
 gi|188143100|gb|ACD47517.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
           Shi470]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|160939011|ref|ZP_02086362.1| hypothetical protein CLOBOL_03905 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437974|gb|EDP15734.1| hypothetical protein CLOBOL_03905 [Clostridium bolteae ATCC
          BAA-613]
          Length = 226

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 2  KACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK-PRLGDILEEHIDDKSTISN 55
           +  + VPQ R+R  ++   N     F FP       P+L D LE+ + +K  + +
Sbjct: 3  NSKYWNVPQNRDRYAVVGTRNKKNLSFTFPKEQHEFVPKLSDYLEKDVPEKYYLPD 58


>gi|261837515|gb|ACX97281.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|317179558|dbj|BAJ57346.1| cytosine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|260886138|ref|ZP_05736578.2| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
 gi|260850757|gb|EEX70626.1| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
          Length = 427

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + A DFGVPQ RER+ II  L     F        KP L D L+E  D + 
Sbjct: 247 LNAADFGVPQNRERIIIIGSLKQPFVFSRLVKQPRKP-LVDFLDESGDFEY 296


>gi|261838928|gb|ACX98693.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
           52]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|210134246|ref|YP_002300685.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132214|gb|ACJ07205.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|308062920|gb|ADO04807.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           Sat464]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|17225517|gb|AAL37447.1|AF328915_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|317176866|dbj|BAJ54655.1| cytosine specific DNA methyltransferase [Helicobacter pylori F16]
          Length = 215

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
          + A D+GVPQ RER +I+     S +F    P   
Sbjct: 13 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 47


>gi|217032842|ref|ZP_03438321.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298737011|ref|YP_003729541.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945425|gb|EEC24089.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298356205|emb|CBI67077.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 361

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|119484300|ref|ZP_01618917.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
 gi|119457774|gb|EAW38897.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
          Length = 449

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 19/76 (25%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-------------------PRLGD 41
           + + +FG+PQ R R+Y+I  LN S +F   + LG K                   P++ D
Sbjct: 146 LNSVNFGLPQNRVRVYMIGVLNASPQFNLISDLGPKDSHSYNAVQLNLFSLQHFPPKVKD 205

Query: 42  ILEEHIDDKSTISNKL 57
           ILEE+ D     S + 
Sbjct: 206 ILEENPDSSFDCSPEF 221


>gi|15644682|ref|NP_206852.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
           26695]
 gi|2313124|gb|AAD07117.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
           26695]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|167630879|ref|YP_001681378.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
 gi|167593619|gb|ABZ85367.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
          Length = 319

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ R R+  +   N  + +F FPT +   P +G+IL
Sbjct: 145 LNASDYGVPQLRPRVVFVAIRNDLAADFTFPTEIMHAPTVGEIL 188


>gi|317009105|gb|ADU79685.1| type II DNA modification [Helicobacter pylori India7]
          Length = 348

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGVLKSFKQKFYFPKPIKTHFSLKDAL 188


>gi|308061350|gb|ADO03238.1| cytosine specific DNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 355

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|297379273|gb|ADI34160.1| Modification methylase [Helicobacter pylori v225d]
          Length = 222

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
          + A D+GVPQ RER +I+     S +F    P   
Sbjct: 20 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 54


>gi|268607976|ref|ZP_06141707.1| cytosine-specific DNA-methyltransferase Sau96I [Ruminococcus
           flavefaciens FD-1]
          Length = 407

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I   N     ++F FPTP   KP L D+L
Sbjct: 224 LNAWDYGVAQKRERLITIGIRNDLTNQIKFTFPTPHEYKPVLRDVL 269


>gi|17225496|gb|AAL37432.1|AF328909_1 putative cytosine-specific DNA methyltransferase [Helicobacter
           pylori]
 gi|17225522|gb|AAL37451.1|AF328916_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|289167263|ref|YP_003445530.1| type II DNA modification enzyme (methyltransferase
           cytosine-specific) [Streptococcus mitis B6]
 gi|288906828|emb|CBJ21662.1| type II DNA modification enzyme (methyltransferase
           cytosine-specific) [Streptococcus mitis B6]
          Length = 387

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 9/51 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFK--FPT------PLGIKPRLGDI 42
           + A D+GVPQ RER+++I   N  ++EF+  FP       P  ++  +GD+
Sbjct: 169 LNAKDYGVPQNRERVFLIGVRNDLNIEFEWSFPEKCTSENPFNLRDAIGDL 219


>gi|308183851|ref|YP_003927984.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           SJM180]
 gi|308059771|gb|ADO01667.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           SJM180]
          Length = 355

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|17225547|gb|AAL37468.1|AF328924_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 234

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
          + A D+GVPQ RER +I+     S +F    P   
Sbjct: 32 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 66


>gi|319412045|emb|CBY91978.1| C-5-cytosine-specific DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFP 30
           + + DFGVPQ RER++II  F        FP
Sbjct: 148 LNSKDFGVPQNRERVFIIGHFRKKGTRLLFP 178


>gi|308172812|ref|YP_003919517.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307605676|emb|CBI42047.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
          Length = 406

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 24/102 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG-------IKPRLGDILEEHIDDKST 52
           M A D+GV Q+RER++I+         F+FP PL        ++  +GD+ E    D   
Sbjct: 246 MSAWDYGVAQKRERVFIVGIRKDLGFTFEFPKPLEGDYQTRVLRDVIGDLPEPERQDC-- 303

Query: 53  ISNKLW--EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
              K W  +      + N+                 +NT+ A
Sbjct: 304 --GKYWTPKSEYTYGQANR----------VQSLDKPSNTIPA 333


>gi|29028380|gb|AAO64731.1| EcoT38I methyltransferase [Escherichia coli]
          Length = 363

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG----IKPRLGDILEE 45
           + + DFGVPQ RER++ I F + +   +    +     + P +G+I+  
Sbjct: 147 LNSKDFGVPQNRERMFFIGFRSENDVKRVEAAIKKYQYLSPTVGEIIRP 195


>gi|145638078|ref|ZP_01793692.1| putative type II 5-cytosoine methyltransferase [Haemophilus
           influenzae PittHH]
 gi|145268726|gb|EDK08715.1| putative type II 5-cytosoine methyltransferase [Haemophilus
           influenzae PittHH]
          Length = 226

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ R+R+ I+       ++F+FP     K    D L+  +  K  IS
Sbjct: 147 LNAADYGVPQTRQRVIIVGIRKDLDIQFEFPKQTHSKNG-NDGLKRWVSIKEAIS 200


>gi|12229863|sp|Q59605|MTB5_NEIGO RecName: Full=Modification methylase NgoBV; Short=M.NgoBV; AltName:
           Full=Cytosine-specific methyltransferase NgoBV;
           Short=M.NgoV
 gi|1165242|gb|AAA86268.1| M.NgoV DNA methylase [Neisseria gonorrhoeae]
          Length = 423

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A +FG+PQ R+R+Y+   L    +  F T     P+L +ILE  +    T S+   + 
Sbjct: 158 LNAKEFGIPQNRKRIYLTGSLKSKPDLSFETSPS--PKLKNILESGLP---TESSPFIKK 212

Query: 61  HQKRKENNKIAGK 73
             K+   +++ GK
Sbjct: 213 LLKKFPPSELYGK 225


>gi|296114087|ref|YP_003628025.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|295921781|gb|ADG62132.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|326560672|gb|EGE11040.1| cytosine-specific methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 318

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 1   MKACDF-GVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDILEEHIDDK--STIS 54
           M   ++  +PQ RER++II F      S+ F+FP  + +   + DIL+    D+      
Sbjct: 147 MNTSEYANIPQNRERIFIIAFDKNIFKSINFEFPNKIPLTKTIHDILDNKKQDESFYYHK 206

Query: 55  NKLWEGHQKRKENNKIA 71
           +K    HQK K   +  
Sbjct: 207 SK---YHQKLKLEMQNK 220


>gi|212695555|ref|ZP_03303683.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677433|gb|EEB37040.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 321

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1   MKACDFGVPQRRERLYII-DFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS-NKLW 58
           + A DFG+PQ+R+R++++      +  F         P L +ILE+++ +  T++   + 
Sbjct: 151 LNAMDFGIPQKRDRIFVVSCLGANNFSFNKLERKETSP-LSEILEKNVSELYTMTQPYML 209

Query: 59  EGHQK 63
           +   K
Sbjct: 210 KFLNK 214


>gi|85703012|ref|ZP_01034116.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
 gi|85671940|gb|EAQ26797.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
          Length = 387

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIK 36
           + + ++GVPQRRER++++ F   + +E+ FP P   +
Sbjct: 180 LNSANYGVPQRRERVFLVGFRADTGIEWHFPKPTHSR 216


>gi|308182232|ref|YP_003926359.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           PeCan4]
 gi|308064417|gb|ADO06309.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           PeCan4]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 153 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 187


>gi|217034606|ref|ZP_03440014.1| hypothetical protein HP9810_903g31 [Helicobacter pylori 98-10]
 gi|216942961|gb|EEC22446.1| hypothetical protein HP9810_903g31 [Helicobacter pylori 98-10]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|317010732|gb|ADU84479.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           SouthAfrica7]
          Length = 348

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P  +   L D L
Sbjct: 145 LNALDYGVPQMRERVILVGVLKSFKQKFYFPKPTKMHFSLKDAL 188


>gi|9622224|gb|AAF89681.1| cytosine-specific methyltransferase [Bacillus sp. LU11]
          Length = 365

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQRR+R++I+      ++F FP P   +
Sbjct: 146 LNAADYGVPQRRKRIFIVG-TREGIKFNFPLPTHNE 180


>gi|317181351|dbj|BAJ59135.1| cytosine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|315586055|gb|ADU40436.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|308071385|ref|YP_003872990.1| Modification methylase AquI alpha subunit (cytosine-specific
           methyltransferase AquI alpha subunit) [Paenibacillus
           polymyxa E681]
 gi|305860664|gb|ADM72452.1| Modification methylase AquI alpha subunit (Cytosine-specific
           methyltransferase AquI alpha subunit) [Paenibacillus
           polymyxa E681]
          Length = 366

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A D+GVPQ+RER++++      +  F FP P   +
Sbjct: 172 VNAADYGVPQKRERVFLVGMRRDLNRTFLFPEPTHNE 208


>gi|127420|sp|P19888|MTBA_BACAR RecName: Full=Modification methylase BanI; Short=M.BanI; AltName:
           Full=Cytosine-specific methyltransferase BanI
 gi|216242|dbj|BAA00613.1| BanI modification methylase [Aneurinibacillus aneurinilyticus]
          Length = 428

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 27/102 (26%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG-----------------IKPRLGDIL 43
           + +  FGVPQ R R+YI+  L    +    + +G                     + DIL
Sbjct: 147 LNSSTFGVPQNRVRIYILGILGSKPKLTLTSNVGAADSHKYKNEQISLFDESYATVKDIL 206

Query: 44  EEHIDDKSTISNKLWEGHQKRKENNKIAGKGF----GYGLFF 81
           E+   +K   S++           +K+ G  F    GY L  
Sbjct: 207 EDSPSEKYRCSDEFIGQL------SKVVGNNFELLHGYRLID 242


>gi|332672853|gb|AEE69670.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori
           83]
          Length = 281

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|317179856|dbj|BAJ57642.1| cytosine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 281

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+     S +F    P   
Sbjct: 79  LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 113


>gi|15645735|ref|NP_207912.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
           pylori 26695]
 gi|2314272|gb|AAD08164.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
           pylori 26695]
          Length = 312

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q RERLYI+ F       F FP  L       D L+  
Sbjct: 139 LNSADFQLAQNRERLYIVGFRKDLKHPFNFPLGLANDYYFKDFLDAD 185


>gi|254421659|ref|ZP_05035377.1| C-5 cytosine-specific DNA methylase superfamily [Synechococcus sp.
           PCC 7335]
 gi|196189148|gb|EDX84112.1| C-5 cytosine-specific DNA methylase superfamily [Synechococcus sp.
           PCC 7335]
          Length = 427

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNK 56
           + A ++G+PQ RERL+++   N +    +P PL   P     LGD+    ++   ++ NK
Sbjct: 161 LNARNYGIPQNRERLFLVGARNNTCLPIYPKPLKHSPTCTHALGDL--PDVEQFHSLINK 218

Query: 57  ------LWEGHQKRKEN---NKIAGKGFGYGLFFENSATTNTL 90
                 L + H             G  +GY   ++ S  TN++
Sbjct: 219 GEVIVCLSQPHSAYAARLRCQSRRGWYYGYRRQWDPSLLTNSI 261


>gi|320326214|gb|EFW82269.1| cytosine-specific DNA-methyltransferase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 448

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           +FG+PQ RER+YI+  L P  +F +P        +  +L++H  D
Sbjct: 153 NFGIPQIRERVYIVGSLIPLEDFSWPKKTDAPTSIDTVLDDHPAD 197


>gi|207093118|ref|ZP_03240905.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori HPKX_438_AG0C1]
          Length = 199

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
          + A D+GVPQ RER +I+     S +F    P   
Sbjct: 32 LNAKDYGVPQNRERAFIVGASRFSFDFNLLEPSQS 66


>gi|48243617|gb|AAT40769.1| putative DNA methylase [Haemophilus influenzae]
          Length = 293

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ R+R+ I+       ++F+FP     K    D L+  +  K  IS
Sbjct: 146 LNAADYGVPQTRQRVIIVGIRKDLDIQFEFPKQTHSKNG-NDGLKRWVSIKEAIS 199


>gi|208435018|ref|YP_002266684.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432947|gb|ACI27818.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 318

 Score = 54.9 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LW 58
           + + DF + Q+RERLYI+ F       F FP  L       D L+   +    I+N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDADNECYLDINNVAFQ 204

Query: 59  EGHQKRKENNK 69
                R  +N+
Sbjct: 205 RYLHNRYNHNR 215


>gi|313667088|gb|ADR72987.1| M2.BsmFI [Geobacillus stearothermophilus]
          Length = 365

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQRR+R++I+      V+F FP P   +
Sbjct: 146 LNAADYGVPQRRKRIFIVG-TREGVKFNFPLPTHNE 180


>gi|188527903|ref|YP_001910590.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
 gi|188144143|gb|ACD48560.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Shi470]
 gi|308063905|gb|ADO05792.1| type II DNA modification enzyme [Helicobacter pylori Sat464]
          Length = 320

 Score = 54.9 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 147 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANNYCFKDFLDAD 193


>gi|317011319|gb|ADU85066.1| type II DNA modification enzyme [Helicobacter pylori SouthAfrica7]
          Length = 321

 Score = 54.5 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHSFHFPLGLANDYCFKDFLDAD 191


>gi|210610944|ref|ZP_03288669.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
 gi|210152244|gb|EEA83251.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
          Length = 278

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHID 48
           + A D+GVPQ+RERL  I   N     ++F FP     KP L D+L +  D
Sbjct: 95  LNAWDYGVPQKRERLITIGIRNDLVNRIKFHFPEAHDYKPVLRDVLLDCPD 145


>gi|307637790|gb|ADN80240.1| DNA-cytosine methyl transferase [Helicobacter pylori 908]
 gi|325996388|gb|ADZ51793.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
 gi|325997976|gb|ADZ50184.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
           pylori 2017]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKRPFSFPLGLANDYCFNDFLDAD 191


>gi|321156918|emb|CBW38908.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II      S    FP     +    +IL         +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKSTRLLFPFRREGQATNSEILKTLGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 208 VYYSEGLAPTLVR--------GKGEGFKIAIP 231


>gi|208434405|ref|YP_002266071.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432334|gb|ACI27205.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 348

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGTLKRFKQKFHFPKPIKTHFSLKDAL 188


>gi|315587009|gb|ADU41390.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 35A]
          Length = 313

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 139 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDAG-NECYLDTNN--A 195

Query: 60  GHQKR 64
             Q+ 
Sbjct: 196 AFQRY 200


>gi|308183225|ref|YP_003927352.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
 gi|308065410|gb|ADO07302.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKRPFNFPLGLANDYCFKDFLDAD 191


>gi|327474139|gb|EGF19549.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK408]
          Length = 480

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II      S    FP     +    +IL         +  +  K
Sbjct: 176 LNSKDFGVPQNRERVFIIGHSRKKSTRLLFPFRREGQATNSEILKTLGNLNPSKSGMSGK 235

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 236 VYYSEGLAPTLVR--------GKGEGFKIAIP 259


>gi|317012898|gb|ADU83506.1| type II DNA modification enzyme [Helicobacter pylori Lithuania75]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHHFVFPLGLANDYCFKDFLDAD 191


>gi|254779672|ref|YP_003057778.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
           [Helicobacter pylori B38]
 gi|254001584|emb|CAX29633.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
           [Helicobacter pylori B38]
          Length = 318

 Score = 54.5 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFNDFLDAD 191


>gi|227540760|ref|ZP_03970809.1| DNA-cytosine methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183472|gb|EEI64444.1| DNA-cytosine methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 387

 Score = 54.1 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRL 39
           + A D+GVPQ R R++I+ F  + +  + FP P      L
Sbjct: 180 VDAADYGVPQHRHRVFIVGFRSDINAGWNFPQPTHSGAAL 219


>gi|296126560|ref|YP_003633812.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018376|gb|ADG71613.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 311

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 1   MKACDF-GVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDK--STI 53
           + + ++  +PQ RER++I  F    V     FKFP P+ +   + D ++    D      
Sbjct: 141 LNSAEYSNIPQNRERIFIAAFSKEKVCSYSNFKFPEPVELTKTIHDFIDHEKQDDIYYYN 200

Query: 54  SNKLWE 59
           S K ++
Sbjct: 201 STKYYK 206


>gi|315222617|ref|ZP_07864506.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
 gi|315188303|gb|EFU22029.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
          Length = 348

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQ R+R++ + F    +++F+ P P   K    D + +
Sbjct: 150 LNASDYGVPQDRKRVFYVGFRKDLNIKFEPPKPYESKLTFKDAIFD 195


>gi|323487872|ref|ZP_08093130.1| cytosine-specific methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323398606|gb|EGA91394.1| cytosine-specific methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 367

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + + DFGVPQ+RER++ I FLN  ++
Sbjct: 149 LNSADFGVPQKRERVFFIGFLNKDID 174


>gi|169826094|ref|YP_001696252.1| modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
 gi|168990582|gb|ACA38122.1| Modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHI 47
           + + DFGVPQ RER+++I      +     FK+P P   +P  GD L+ ++
Sbjct: 227 VNSRDFGVPQLRERVFLIGVHKEKIAEKYGFKYPKP---QPTHGDGLKPYV 274


>gi|15612115|ref|NP_223767.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4155654|gb|AAD06642.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 321

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKRPFNFPLGLANDYCFKDFLDAD 191


>gi|317127845|ref|YP_004094127.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
 gi|315472793|gb|ADU29396.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
          Length = 363

 Score = 54.1 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID-DKSTISNKLWE 59
           + A D+GVPQ R R++ +  L+    F+FP          D L +    +K   S+  +E
Sbjct: 152 LNAADYGVPQHRHRVFFVGVLD--GAFEFPRKKNEVISTKDALSDLPSLEKFEGSDVEFE 209

Query: 60  GHQK 63
            H K
Sbjct: 210 YHVK 213


>gi|328947436|ref|YP_004364773.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447760|gb|AEB13476.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 439

 Score = 54.1 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL--- 57
           + + DF +PQ+RER Y + FL+   +F FP    I   L DI++    D+S    K    
Sbjct: 240 LSSLDFELPQKRERWYCVGFLS-KTDFVFPAGTKIHKNLRDIIDLDNQDESLKLPKFELD 298

Query: 58  -WEGHQKRKENNKIAGKGFGYGLFFENSAT 86
               H +  +N     K        +NS  
Sbjct: 299 RIAYHFEMAKNKTDRVK-------HDNSKY 321


>gi|291544225|emb|CBL17334.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 407

 Score = 54.1 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A ++GV Q+RERL  I   N     ++F FPTP   KP L D+L
Sbjct: 224 LNAWNYGVAQKRERLITIGIRNDLTNQIKFTFPTPHEYKPVLRDVL 269


>gi|125974805|ref|YP_001038715.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
           27405]
 gi|125715030|gb|ABN53522.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
           27405]
          Length = 334

 Score = 54.1 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNK-L 57
           + A D+GVPQ R R+ +  F       +FKFP P   K  L + + +  + K   S+   
Sbjct: 155 VNAADYGVPQDRWRVILYGFRKDLEVKDFKFPEPFPYKVTLREAIGDMPEPK--QSDICH 212

Query: 58  WEGHQKRKENNKIAG 72
                +    N+  G
Sbjct: 213 ASYSSRYMSRNRKRG 227


>gi|158320884|ref|YP_001513391.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141083|gb|ABW19395.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 329

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGD 41
           + A DF VPQ R+R++ I F       +FKFP P+  +  L D
Sbjct: 145 LNANDFQVPQDRKRVFYIGFRKDLGIADFKFPKPIEPRLTLKD 187


>gi|289423024|ref|ZP_06424844.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156598|gb|EFD05243.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 706

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKP------RLGDILEEHIDDKSTI 53
           + A +FGVPQ RER+ I+  LN  + +F       I+       ++ D  E    +  TI
Sbjct: 147 LNARNFGVPQNRERIIIVGNLNGRAFDFTKLKTNTIETMKPFLDKVAD-FEILPKESYTI 205

Query: 54  SN 55
            +
Sbjct: 206 LD 207


>gi|317180646|dbj|BAJ58432.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 348

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|317483873|ref|ZP_07942812.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316924890|gb|EFV46037.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 401

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGI 35
           + A D+G+PQRRER++I+ F +   V + FP     
Sbjct: 178 VNAADYGIPQRRERVFIVGFRHDLGVRWSFPETTHS 213


>gi|317179147|dbj|BAJ56935.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 351

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|308061739|gb|ADO03627.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
          Length = 704

 Score = 53.8 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 14/73 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-PTPLGIKPRLG---------DILEEHIDDK 50
           + A +F VPQ RER+ I+ +L   V F F P        +          +ILE +   +
Sbjct: 143 LNAKNFSVPQNRERIIIVGYLGSQV-FDFNPIKTNPITDMQNFLDKSGHFEILEPY---E 198

Query: 51  STISNKLWEGHQK 63
            T+ +      Q 
Sbjct: 199 YTLLDNQLLKRQN 211


>gi|328766176|gb|EGF76234.1| hypothetical protein BATDEDRAFT_28720 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 373

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A D+GVPQ+RER++II   N    E+ FP P   +
Sbjct: 181 VNARDYGVPQQRERVFIIGIRNDIEFEYDFPAPTHGE 217


>gi|261839303|gb|ACX99068.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori 52]
          Length = 348

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|291618717|ref|YP_003521459.1| HsdRM [Pantoea ananatis LMG 20103]
 gi|291153747|gb|ADD78331.1| HsdRM [Pantoea ananatis LMG 20103]
          Length = 313

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLG 34
           + A D+GVPQ R+R++I+    N +VE+ FP P  
Sbjct: 141 LNAMDYGVPQERKRIFIVGIKDNINVEYSFPEPTH 175


>gi|317009733|gb|ADU80313.1| type II DNA modification enzyme [Helicobacter pylori India7]
          Length = 318

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           + + DF + Q+RERLYI+ F       F FP  L       D L+ 
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFNDFLDA 190


>gi|160947479|ref|ZP_02094646.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
 gi|158446613|gb|EDP23608.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
          Length = 348

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQ R+R++ + F     V+F+ P P   K    D + +
Sbjct: 150 LNASDYGVPQDRKRVFYVGFRKDLKVKFEPPKPYETKLTFKDTIFD 195


>gi|227485931|ref|ZP_03916247.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235976|gb|EEI85991.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 318

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK----FPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A ++G+PQ R R Y +       E      FP    ++  L D+++    +   IS
Sbjct: 142 LNAKNYGIPQNRNRWYCVGVDKNHKELNLDDVFPGICELRYTLKDVIDCEYKEDYQIS 199


>gi|217033040|ref|ZP_03438509.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298736593|ref|YP_003729119.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945239|gb|EEC23921.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298355783|emb|CBI66655.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 351

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFHFPKPIKTHFSLKDAL 188


>gi|321312120|ref|YP_004204407.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
 gi|320018394|gb|ADV93380.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
          Length = 380

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + +  FGVPQ+RER++ + FL  +V+
Sbjct: 149 LNSSHFGVPQKRERIFFVGFLEKNVD 174


>gi|322376648|ref|ZP_08051141.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sp. M334]
 gi|321282455|gb|EFX59462.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sp. M334]
          Length = 452

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II           FP     +    +IL         +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKGTRLLFPFRREGQATNSEILKTLGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGF 75
              S  L     +        G+GF
Sbjct: 208 VYYSEGLAPTLVR------GKGEGF 226


>gi|261837889|gb|ACX97655.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 348

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGTLKSFKQKFHFPKPIKAHFSLKDAL 188


>gi|332530473|ref|ZP_08406414.1| DNA cytosine methyltransferase M.NgoMIII [Hylemonella gracilis ATCC
           19624]
 gi|332040042|gb|EGI76427.1| DNA cytosine methyltransferase M.NgoMIII [Hylemonella gracilis ATCC
           19624]
          Length = 413

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH-IDDKSTISNKLW 58
           + A ++GVPQRRER++I+ F     +++ FP        L  +L +  +  +       W
Sbjct: 187 VNAANYGVPQRRERVFIVGFRRDLPIQWSFPRETHS---LDALLHDQWVTGEY------W 237

Query: 59  EGH----QKRKENNKI 70
           E H    + R + +K 
Sbjct: 238 ERHGVAKRARPQPHKS 253


>gi|317010127|gb|ADU80707.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 703

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-PTPLGIKPRLGDILEE 45
           + A DF VPQ RER+ I+ +L   V F F P        + + L++
Sbjct: 143 LNAKDFSVPQNRERIIIVGYLGSQV-FDFNPIKKNPIISMQNFLDK 187


>gi|207091758|ref|ZP_03239545.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 703

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-PTPLGIKPRLGDILEE 45
           + A DF VPQ RER+ I+ +L   V F F P        + + L++
Sbjct: 143 LNAKDFSVPQNRERIIIVGYLGSQV-FDFNPIKKNPIISMQNFLDK 187


>gi|312872570|ref|ZP_07732638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091932|gb|EFQ50308.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2062A-h1]
          Length = 336

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + D L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERESFVFPQPFKLNRFVEDFLLPD 199


>gi|309803758|ref|ZP_07697844.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|308164167|gb|EFO66428.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           11V1-d]
          Length = 336

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + D L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERELFVFPQPFKLNRFVEDFLLPD 199


>gi|241666957|ref|YP_002985041.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862414|gb|ACS60079.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 393

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A + GVPQRRER+  + F  +  +++ FP        L  +L + +          W+
Sbjct: 181 LNAANHGVPQRRERVVFVGFRSDLDIKWAFPAETHS---LDALLWDQVHGDY------WD 231

Query: 60  GHQKRKE 66
            H+ RK 
Sbjct: 232 RHRVRKA 238


>gi|329920363|ref|ZP_08277095.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
 gi|328936039|gb|EGG32492.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
          Length = 336

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + D L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDVERESFVFPQPFKLNRFVEDFLLPD 199


>gi|309807025|ref|ZP_07701007.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166645|gb|EFO68842.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           03V1-b]
          Length = 336

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + D L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERELFVFPQPFKLNRFVEDFLLPD 199


>gi|315604954|ref|ZP_07880010.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313349|gb|EFU61410.1| modification methylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 322

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTP-LGIKPRLGDILEE 45
           + A DFGVPQ R R+  + F + +   F++P+P     P +G+ L +
Sbjct: 147 LNASDFGVPQLRPRVIAVGFRHDTAPSFEYPSPFQNAAPTVGETLAD 193


>gi|309804726|ref|ZP_07698791.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
 gi|312871535|ref|ZP_07731628.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           3008A-a]
 gi|325913106|ref|ZP_08175476.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
 gi|308166118|gb|EFO68336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
           09V1-c]
 gi|311092930|gb|EFQ51281.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           3008A-a]
 gi|325477527|gb|EGC80669.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 336

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + D L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERELFVFPQPFKLNRFVEDFLLPD 199


>gi|256819660|ref|YP_003140939.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581243|gb|ACU92378.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 318

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 1   MKACDF-GVPQRRERLYIIDFLNPSV----EFKFPTPLGIKPRLGDILEEHIDDKST 52
           +   ++  +PQ RER++I+ F    V    EF+FP  + +   +   LE+   +   
Sbjct: 148 LNTMEYANIPQNRERIFIVAFDPKQVPNYKEFQFPEKIKLTKTIHSFLEKGKQNDYF 204


>gi|297379680|gb|ADI34567.1| DNA-cytosine methyltransferase [Helicobacter pylori v225d]
          Length = 265

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 59  LNALDYGVPQIRERVILVGALKSFKQKFHFPKPIKTHFSLKDAL 102


>gi|196037189|ref|ZP_03104504.1| modification methylase HaeIII [Bacillus cereus W]
 gi|195990293|gb|EDX54346.1| modification methylase HaeIII [Bacillus cereus W]
          Length = 415

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + + D+GVPQ RER++I+   N       F++  P   +P  G+    ++  K TISN
Sbjct: 231 VNSRDYGVPQLRERVFIVGIRNDIHEKYGFEYEVP---EPTHGEGKIPYVTLKDTISN 285


>gi|237742048|ref|ZP_04572529.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429696|gb|EEO39908.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 440

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A ++GVPQ R RL +I F N   E K+P     K  L + L +  +    + NK    
Sbjct: 189 LNASNYGVPQNRHRLILIGFRNDMKEPKYPKEFKQKVTLREALSDLTN--YELDNK---K 243

Query: 61  HQKRKENNKIAG 72
           +Q   +  +   
Sbjct: 244 YQNSSKKGRTKN 255


>gi|331677320|ref|ZP_08377999.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331075055|gb|EGI46371.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 415

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG-----------------IKPRLGDIL 43
           +   +FGVPQ R R+YII  L   V    P  LG                  + ++ DIL
Sbjct: 146 LNTSNFGVPQNRVRIYIIASLEKEVTLTIPNDLGAKDTHNYKPSKGGHDFYTESKVSDIL 205

Query: 44  EEHIDDKSTISN 55
           E+  D+    S+
Sbjct: 206 EDSPDESYDCSD 217


>gi|269114810|ref|YP_003302573.1| Cytosine-specific DNA methyltransferase/Type II site-specific
           deoxyribonuclease [Mycoplasma hominis]
 gi|268322435|emb|CAX37170.1| Cytosine-specific DNA methyltransferase/Type II site-specific
           deoxyribonuclease [Mycoplasma hominis ATCC 23114]
          Length = 553

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDI 42
           + A DFGVPQ+RERL  I         + F+FP     KP + D+
Sbjct: 151 LNAWDFGVPQKRERLITIGVRQDLLSKISFEFPMEHSYKPTMRDV 195


>gi|171911881|ref|ZP_02927351.1| DNA-cytosine methyltransferase [Verrucomicrobium spinosum DSM 4136]
          Length = 330

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE----EHIDDKSTISNK 56
           + +  FGVPQ+RERL ++        F FP P        D LE        +   ++  
Sbjct: 156 LNSVHFGVPQKRERLVVVG---HLGGFVFPAPSAKVWTSADALEGMLYATPPESRFLTPS 212

Query: 57  LWEGHQKRKE 66
           + +     ++
Sbjct: 213 MDKYIANYEK 222


>gi|291528318|emb|CBK93904.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 344

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHID 48
           + A ++GVPQ+RERL  I   N      E++FP     KP L D+L +  D
Sbjct: 152 LNAWNYGVPQKRERLITIGIRNDLVGKTEYRFPKAHSYKPVLRDVLLDCPD 202


>gi|208434021|ref|YP_002265687.1| cytosine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
 gi|208431950|gb|ACI26821.1| cytosine specific DNA methyltransferase (putative type II)
           [Helicobacter pylori G27]
          Length = 281

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           +   D+GVPQ RER +I+     S +FK   P   
Sbjct: 79  LNVKDYGVPQNRERAFIVGASRFSFDFKLLEPSQS 113


>gi|323650698|gb|ADX97433.1| M1.BspACI [Bacillus psychrodurans]
          Length = 320

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 1   MKACDFGVPQRRERLYIID-----FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           M A  +GVPQ R R Y +      F    +   FP    ++  +   +E+++     +S
Sbjct: 144 MNAKYYGVPQNRNRWYCVGYDASQFSKIDIHNIFPEEENLETFIDSYIEKNVSQDYQMS 202


>gi|218135211|ref|ZP_03464015.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990596|gb|EEC56607.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
           43243]
          Length = 344

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHID 48
           + A ++GVPQ+RERL  I   N      E++FP     KP L D+L +  D
Sbjct: 152 LNAWNYGVPQKRERLITIGIRNDLVGKTEYRFPKAHSYKPVLRDVLLDCPD 202


>gi|319639604|ref|ZP_07994351.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399175|gb|EFV79849.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 348

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-----LGIKPRLGDILEEHIDD 49
           + A D+GVPQ R+R + + F N ++ F+FP       + +K  + D+ +  +DD
Sbjct: 155 LMASDYGVPQNRKRAFFVGFKNGTI-FEFPKQTVNQYVTVKQAISDLPDYSVDD 207


>gi|15611502|ref|NP_223153.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154963|gb|AAD06007.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 351

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQVRERVILVGALKSFKQKFYFPKPIKTHFSLKDAL 188


>gi|252957|gb|AAA09969.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE 44
           + + D+GV Q R+R++II         +F FP     + RL DIL+
Sbjct: 146 LNSFDYGVAQNRDRVFIIGIQQKLGVPDFSFPEYSESEQRLYDILD 191


>gi|302383143|ref|YP_003818966.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193771|gb|ADL01343.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 377

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLG 40
           + A + GVPQ+RER++I+ F  + S E+ FP        L 
Sbjct: 170 LNAANHGVPQKRERVFIVGFRSDLSTEWNFPAETHSARALA 210


>gi|119716511|ref|YP_923476.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
 gi|119537172|gb|ABL81789.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
          Length = 399

 Score = 53.0 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+GVPQ R R+ ++ F     + + FP P       G +L   +  +   S++ 
Sbjct: 202 VNAADYGVPQNRWRVVLVGFRKDLGISWSFPDPTHSA---GALLRAQLSGEY--SDRH 254


>gi|227540659|ref|ZP_03970708.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227239483|gb|EEI89498.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 386

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + + DFGVPQ RER++ +      ++
Sbjct: 171 LNSLDFGVPQHRERIFFVGIRKEFLD 196


>gi|282899236|ref|ZP_06307209.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195872|gb|EFA70796.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 422

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 23/81 (28%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK----------------------FPTPLGIKPR 38
           + + +FGVPQ R R+YI+  L  +                          FP    +  +
Sbjct: 146 LNSSNFGVPQNRVRIYILGLLGKNPRLTINSDKGATDSHSFKEQFYQLSLFPDSYSV-VK 204

Query: 39  LGDILEEHIDDKSTISNKLWE 59
           + +ILE+ + +   +S +  +
Sbjct: 205 VKNILEQKVSENYYLSKRFQQ 225


>gi|321310707|ref|YP_004193036.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802551|emb|CBY93197.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 340

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + + D+GV Q+RERL +I         + FK+P     KP L D+L +  + 
Sbjct: 156 LNSWDYGVAQKRERLILIGIRSDFREKISFKYPKKHRYKPVLSDVLNDVPES 207


>gi|127435|sp|P25264|MTC2_HERAU RecName: Full=Modification methylase HgiCII; Short=M.HgiCII;
           AltName: Full=Cytosine-specific methyltransferase HgiCII
 gi|43464|emb|CAA38935.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILE 44
           + + D+GV Q R+R++II         +F FP     + RL DIL+
Sbjct: 146 LNSFDYGVAQNRDRVFIIGIQQKLGVPDFSFPEYSESEQRLYDILD 191


>gi|317178577|dbj|BAJ56365.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 318

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + DF + Q+RERLYI+ F       F FP  L       D L+   ++    +N    
Sbjct: 145 LNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYYFEDFLDAG-NECYLDTNN--N 201

Query: 60  GHQKR 64
             Q+ 
Sbjct: 202 AFQRY 206


>gi|317013900|gb|ADU81336.1| type II DNA modification (methyltransferase) [Helicobacter pylori
           Gambia94/24]
          Length = 351

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F FP P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFYFPKPIKTHFSLKDAL 188


>gi|967022|emb|CAA62381.1| DNA (cytosine-5-)-methyltransferase [Geobacillus
           stearothermophilus]
 gi|1262297|gb|AAA96793.1| m5C-multispecific methyltransferase [Geobacillus
           stearothermophilus]
 gi|1589631|prf||2211376A cytosine-C5-DNA methyltransferase
          Length = 534

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPR-------LGDILEE 45
           + A D+GV Q+RER++I+    +    F+FP P     R       +GD+ E 
Sbjct: 155 INAWDYGVAQKRERVFIVGIRADLGFAFEFPEPRPGDYRTQVLRDVIGDLPEP 207


>gi|207109252|ref|ZP_03243414.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 210

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + A DF VPQ RER+ I+ +L   V F F
Sbjct: 171 LNAKDFSVPQNRERIIIVGYLGSQV-FDF 198


>gi|127486|sp|P23737|MTS9_STAAU RecName: Full=Modification methylase Sau96I; Short=M.Sau96I;
           AltName: Full=Cytosine-specific methyltransferase Sau96I
 gi|581567|emb|CAA37260.1| Sau96I DNA methyltransferase [Staphylococcus aureus]
 gi|329730456|gb|EGG66846.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 430

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDILEEHIDDKST-IS 54
           + + ++ V Q+RER+ II      V+     F+FP     KP L D+L++    K T  S
Sbjct: 245 LNSWNYDVAQKRERIVIIGIREDLVKEQKYPFRFPLAQVYKPVLKDVLKDVPKSKVTAYS 304

Query: 55  NK 56
           +K
Sbjct: 305 DK 306


>gi|213053466|ref|ZP_03346344.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 320

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDILEE 45
           +PQ RER+ ++ F    N   +F            +P L ++LE 
Sbjct: 276 LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEP 320


>gi|207108548|ref|ZP_03242710.1| type II DNA modification enzyme [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 171

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q RERLYI+ F       F FP  L       D L+  
Sbjct: 99  LNSADFQLAQNRERLYIVGFRKDLKHHFVFPLGLANDYHFEDFLDAD 145


>gi|168207191|ref|ZP_02633196.1| modification methylase ScrFIB [Clostridium perfringens E str.
           JGS1987]
 gi|170661387|gb|EDT14070.1| modification methylase ScrFIB [Clostridium perfringens E str.
           JGS1987]
          Length = 310

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-PRLGDILEEHIDDKST 52
           + A DFG+PQ R R++ I  L  ++ F F      + P + + LEE +D+K  
Sbjct: 149 LNAMDFGLPQDRNRVFTISILGENL-FDFDKLEKKETPHIKEFLEEIVDEKYI 200


>gi|119511191|ref|ZP_01630308.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
 gi|119464179|gb|EAW45099.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
          Length = 432

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL--GIKPRLGDILEEHIDDKSTISNKLW 58
           + A  FGVPQ RERL+I+   N      +P  +    KP+    L   ++    +S  +W
Sbjct: 157 LNAAHFGVPQNRERLFILGCRNDLELPNYPEAITQRAKPK-KSGLPHELN----LSPTVW 211

Query: 59  EGHQK 63
           E  Q 
Sbjct: 212 EALQD 216


>gi|302347057|ref|YP_003815355.1| putative modification methylase HhaI [Prevotella melaninogenica
           ATCC 25845]
 gi|302150379|gb|ADK96640.1| putative modification methylase HhaI [Prevotella melaninogenica
           ATCC 25845]
          Length = 453

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 5   DFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
           +FG+PQ R+R+YI+           F FP        + DI+E +  D   I+    E H
Sbjct: 154 EFGIPQHRKRIYIVCIRKDLGLLDNFTFPKGNKPVCDVNDIIEANAKD---ITPIKEETH 210

Query: 62  QK 63
            +
Sbjct: 211 YQ 212


>gi|258593909|emb|CAA33765.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 396

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL-----GIKPRLGDILEEHIDD 49
           + A D+GVPQ RER+ I+   N     +++P        G+KP +   LEE I D
Sbjct: 198 LNARDYGVPQIRERVIIVGVRNDIDFNYEYPEITHGNEEGLKPYVT--LEEAIGD 250


>gi|282899425|ref|ZP_06307392.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195689|gb|EFA70619.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 384

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 20/74 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++G+PQRRER++I+      ++ + FP P      L                 LW 
Sbjct: 176 LDAANYGIPQRRERVFIVGIRQDLNINWSFPQPSHSYDSL-----------------LWS 218

Query: 60  GH--QKRKENNKIA 71
                   E ++I 
Sbjct: 219 QFVSYDYWERHQIK 232


>gi|315644199|ref|ZP_07897369.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
 gi|315280574|gb|EFU43863.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
          Length = 485

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-------LGIKPRLGDILEEHIDD 49
           + + D+GVPQ RER+ ++   N    ++++P P       L     L D + + ++D
Sbjct: 225 LNSRDYGVPQLRERVILVGVRNDIDFDYEYPEPSHGEGLGLNPYVTLRDAIGDLVED 281


>gi|294678239|ref|YP_003578854.1| cytosine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294477059|gb|ADE86447.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Rhodobacter capsulatus SB 1003]
          Length = 451

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTPLGI--KPRLGDILEEHIDDKSTISNKLWEGH 61
           FGVPQ RER  I+        F +P P     +  +  +L+E   +   +  +  +  
Sbjct: 149 FGVPQVRERAIIVGSRTGLRHFSWPEPTHQLDQVTIKSVLDEKPKEARPLGPRFIQYL 206


>gi|224543136|ref|ZP_03683675.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523923|gb|EEF93028.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
           15897]
          Length = 430

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE---EHIDDKSTISNKL 57
           + A  FG+PQ R+R+YI+         +      +   L D+LE     +D K T   +L
Sbjct: 159 LNAKYFGIPQERKRIYIVGTKKEKPNLE--KFHRLDCSLADVLETGIPTMDSKFT---RL 213

Query: 58  WEGHQK------RKENNKIAGKG 74
              H        +   +K  G  
Sbjct: 214 LLKHYSVEELFGKAIKDKRGGNN 236


>gi|331002097|ref|ZP_08325616.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411191|gb|EGG90607.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 706

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILEEHID------DKSTI 53
           + A +FGVPQ RER+ I+        +F       ++  +   L++  D      D  TI
Sbjct: 147 LNARNFGVPQNRERIIIVGNIDGRIFDFTKLKMNTVET-MKPFLDKAADFEILPRDSYTI 205


>gi|119510471|ref|ZP_01629604.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
 gi|119464893|gb|EAW45797.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
          Length = 727

 Score = 52.2 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           + + DFG+PQ RER+  +   +    FK        P L + L
Sbjct: 146 VNSRDFGLPQNRERVVFVATKDKKFNFKTLQKSHPVPTLREFL 188


>gi|293371777|ref|ZP_06618187.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292633229|gb|EFF51800.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
          Length = 459

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG-----IKPRLGDILEE 45
           + A D+ +PQ R R++I+ F+   +  FKFP P       ++  +GDI EE
Sbjct: 143 LNAADYCIPQDRFRVFIVGFIKELNGAFKFPEPSQKPLVTLQKAIGDITEE 193


>gi|298286911|sp|P13906|MTB1_BACSH RecName: Full=Modification methylase BspRI; Short=M.BspRI; AltName:
           Full=Cytosine-specific methyltransferase BspRI
 gi|258593908|emb|CAA33764.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 424

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL-----GIKPRLGDILEEHIDD 49
           + A D+GVPQ RER+ I+   N     +++P        G+KP +   LEE I D
Sbjct: 226 LNARDYGVPQIRERVIIVGVRNDIDFNYEYPEITHGNEEGLKPYVT--LEEAIGD 278


>gi|632681|gb|AAB31678.1| DNA (cytosine-5)-methyltransferase, m5C-MTase {BspRI
           restriction-modification system} [Escherichia coli,
           Peptide, 424 aa]
          Length = 424

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL-----GIKPRLGDILEEHIDD 49
           + A D+GVPQ RER+ I+   N     +++P        G+KP +   LEE I D
Sbjct: 226 LNARDYGVPQIRERVIIVGVRNDIDFNYEYPEITHGNEEGLKPYVT--LEEAIGD 278


>gi|6272296|gb|AAF06073.1|AF072715_4 putative methylase [Mycoplasma mycoides subsp. capri]
          Length = 390

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + + D+G  Q RER++ I +L+    F FP PL  K  +  I++   D K    N L + 
Sbjct: 229 VNSTDYGSCQNRERVFCISYLDKQKNFTFPKPLITKKEIDSIIKNDDDMKEC--NHLLKY 286

Query: 61  H 61
            
Sbjct: 287 L 287


>gi|226324849|ref|ZP_03800367.1| hypothetical protein COPCOM_02636 [Coprococcus comes ATCC 27758]
 gi|225207297|gb|EEG89651.1| hypothetical protein COPCOM_02636 [Coprococcus comes ATCC 27758]
          Length = 473

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + DFGVPQ RER +I+  L      K FP
Sbjct: 176 LNSKDFGVPQNRERCFIVGHLRGRGSAKVFP 206


>gi|270686639|ref|ZP_06222860.1| modification methylase DsaV [Haemophilus influenzae HK1212]
 gi|270316163|gb|EFA28145.1| modification methylase DsaV [Haemophilus influenzae HK1212]
          Length = 225

 Score = 52.2 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDI 42
          +KA D+G+PQ R R ++I F +  V   F FP P+ +K  + D+
Sbjct: 18 LKASDYGLPQLRPRAFMIGFRDDHVLGNFSFPEPIPLKFTMSDV 61


>gi|257062089|ref|YP_003139977.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256592255|gb|ACV03142.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 456

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPRLGDILE 44
           + + DFG+ Q R+R++I+          +F FP PL + P+L + +E
Sbjct: 173 LNSYDFGLSQDRDRVFIVGIHQQIENAAQFSFPEPLNLSPKLYEFIE 219


>gi|328946815|gb|EGG40952.1| modification methylase DdeI [Streptococcus sanguinis SK1087]
          Length = 387

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTP--LGIKPRLGDILEE 45
           + A DFGVPQ RER+++I          E+ FP    L  +  L D + +
Sbjct: 169 INAKDFGVPQNRERVFLIGIRKDLKIKFEWTFPEETTLNNEITLRDAISD 218


>gi|225862883|ref|YP_002748261.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225787129|gb|ACO27346.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 367

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ R+R++ +  L+    F++P     K
Sbjct: 152 LNAADYGVPQNRQRVFFVGVLD--GHFEYPELDENK 185


>gi|535137|emb|CAA56493.1| type II DNA-methyltransferase [Bacillus phage phi3T]
          Length = 326

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG 34
           + A D+GV Q+RER++I+   N    +F FP PL 
Sbjct: 155 VNAWDYGVAQKRERVFIVGVRNDLGFKFDFPNPLE 189


>gi|317010333|gb|ADU84080.1| cytosine specific DNA methyltransferase [Helicobacter pylori
           SouthAfrica7]
          Length = 361

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ RER +I+   + S +F    P   
Sbjct: 153 LNAKDYGVPQSRERAFIVGATHFSFDFDLLEPSQS 187


>gi|315611977|ref|ZP_07886895.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
           49296]
 gi|315315966|gb|EFU64000.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
           49296]
          Length = 359

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER++I+ 
Sbjct: 147 LNSKDFGVPQNRERVFIVG 165


>gi|157961098|ref|YP_001501132.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846098|gb|ABV86597.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
          Length = 406

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A  +GVPQ RER++I+        FK P+P     +   +
Sbjct: 161 VNASSYGVPQHRERVFIVA-NRDGGTFKMPSPTHSDSKDPTL 201


>gi|260579295|ref|ZP_05847178.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
 gi|258602594|gb|EEW15888.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
          Length = 372

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           A DFGVPQ R R  ++    P  + F +P PL  +  +G+ L  
Sbjct: 180 AADFGVPQLRPRFVLVALREPYADYFAWPEPLDTRVTVGEALHS 223


>gi|68536951|ref|YP_251655.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68264550|emb|CAI38038.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 341

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           A DFGVPQ R R  ++    P  + F +P PL  +  +G+ L  
Sbjct: 149 AADFGVPQLRPRFVLVALREPYADYFAWPEPLDTRVTVGEALHS 192


>gi|325955715|ref|YP_004293189.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
 gi|325334695|gb|ADZ08248.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
          Length = 406

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKF--PTPLG 34
           + A D+GVPQ RER++++   N   + F++  P P  
Sbjct: 224 VNAKDYGVPQSRERVFLVGVRNDIADKFQYTVPEPTN 260


>gi|225856779|ref|YP_002738290.1| methyl transferase [Streptococcus pneumoniae P1031]
 gi|225724445|gb|ACO20297.1| methyl transferase [Streptococcus pneumoniae P1031]
          Length = 452

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL 43
           + + DFGVPQ RER++II           FP     +    + L
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKRGTRLLFPFRREGQTTNSETL 191


>gi|127417|sp|P25262|MTB1_HERAU RecName: Full=Modification methylase HgiBI; Short=M.HgiBI; AltName:
           Full=Cytosine-specific methyltransferase HgiBI
 gi|43478|emb|CAA38927.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILE 44
           + + DFGV Q R+R++I+          F FP     + RL  IL+
Sbjct: 146 LNSFDFGVAQNRDRVFIVGIQQKLDLNGFSFPEYTESEQRLYHILD 191


>gi|183217290|gb|ACC59209.1| methyltransferase [Streptococcus pneumoniae]
 gi|321156848|emb|CBW38835.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP---TPLGIKPRLGDIL------EEHIDDK 50
           + + DFGVPQ RER++II           FP         P    IL      +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKRGTRLLFPFRREGQATNPETLKILGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 208 VYYSEGLAPTLVR--------GKGEGFKIAIP 231


>gi|313884351|ref|ZP_07818113.1| putative modification methylase BanI [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620429|gb|EFR31856.1| putative modification methylase BanI [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 335

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFL---NPSVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + A  FGV Q+R+RL +I         ++F++P   G    L D+L++  D   
Sbjct: 146 LNAAYFGVGQKRQRLIVIGIRSDLKDKIDFEYPKEDGEMTILRDVLKDVPDSPY 199


>gi|67458529|ref|YP_246153.1| site-specific DNA methylase [Rickettsia felis URRWXCal2]
 gi|67004062|gb|AAY60988.1| Site-specific DNA methylase [Rickettsia felis URRWXCal2]
          Length = 171

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPR--LGDILEEHIDDKSTIS 54
          + A  FGVPQ RER+Y +            K+  P     R  LGDILE+ +D    I+
Sbjct: 2  LNASLFGVPQARERVYFVCLRKDFSSEYILKYVKPKESYERIFLGDILEKEVDKSLYIN 60


>gi|218249004|ref|YP_002374375.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218169482|gb|ACK68219.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 456

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPRLGDILE 44
           + + DFG+ Q R+R++I+          +F FP PL + P+L + +E
Sbjct: 173 LNSYDFGLSQDRDRVFIVGIHQQIENAAQFSFPEPLNLSPKLYEFIE 219


>gi|295110826|emb|CBL24779.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 312

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 22/76 (28%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK---------------------PR 38
           + A D+GVPQ R+R+ II   N  + E+ +P P   K                     P 
Sbjct: 142 LNAADYGVPQTRQRVIIIGVRNDINFEYIYPLPTNSKNGKDGLPEWISVSEAMAHIPDPD 201

Query: 39  LGDILEEHIDDKSTIS 54
           L + L  H+  K  ++
Sbjct: 202 LPNDLPNHVYSKYKLN 217


>gi|52788777|gb|AAU87368.1| MnlI m5C-methyltransferase [Moraxella nonliquefaciens]
          Length = 351

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           + A D+GVPQ RER++II   N   +F 
Sbjct: 150 LNAKDYGVPQSRERIFIIATKNQPFDFD 177


>gi|23428398|gb|AAL15430.1| DNA methyltransferase A [Moraxella nonliquefaciens]
          Length = 351

 Score = 51.8 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           + A D+GVPQ RER++II   N   +F 
Sbjct: 150 LNAKDYGVPQSRERIFIIATKNQPFDFD 177


>gi|323650438|gb|ADX97294.1| M.Cac8I [Clostridium acetobutylicum]
          Length = 398

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDK 50
           + A +FGVPQ RER+ I+   N   + +  P    +K +   +  +    K
Sbjct: 181 LNAYNFGVPQNRERVIIVGIRNDLRDRYIIPQKPAVKNKRKTLFVKPTHSK 231


>gi|228473386|ref|ZP_04058140.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275288|gb|EEK14086.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 358

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A D+GVPQ R R +++      +EF+FP P   K  + +
Sbjct: 149 LWASDYGVPQNRNRFFMVG-NRHGIEFEFPEPFEKKITVEE 188


>gi|284803522|emb|CBJ23522.1| putative methyltransferase [Streptococcus pneumoniae]
          Length = 372

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 1  MKACDFGVPQRRERLYIIDF-LNPSVEFKFP---TPLGIKPRLGDIL------EEHIDDK 50
          + + DFGVPQ RER++II           FP         P    IL      +  +  K
Sbjct: 2  LNSKDFGVPQNRERVFIIGHSRKRGTRLLFPFRREGQATNPETLKILGNLNPSKSGMSGK 61

Query: 51 STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
             S  L     +        GKG G+ +   
Sbjct: 62 VYYSEGLAPTLVR--------GKGEGFKIAIP 85


>gi|228478395|ref|ZP_04063003.1| modification methylase HaeIII [Streptococcus salivarius SK126]
 gi|228250074|gb|EEK09344.1| modification methylase HaeIII [Streptococcus salivarius SK126]
          Length = 387

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFGVPQ RER+++I          E+ FP    +   +   L + I D   + N  
Sbjct: 169 INAKDFGVPQNRERVFLIGVRKDLKIKSEWIFPEETSLNNEIT--LRDAISDLPILGNNE 226

Query: 58  WEGHQ 62
            + + 
Sbjct: 227 QKYNY 231


>gi|4063721|gb|AAC98421.1| methyl transferase [Streptococcus pneumoniae]
          Length = 452

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP---TPLGIKPRLGDIL------EEHIDDK 50
           + + DFGVPQ RER++II           FP         P    IL      +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKRGTRLGFPFRREGQATNPETLKILGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 208 VYYSEGLAPTLVR--------GKGEGFKIAIP 231


>gi|307294815|ref|ZP_07574657.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306879289|gb|EFN10507.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 394

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGI 35
           + A ++GVPQRRER+    F  +  +E+ FP P   
Sbjct: 187 LNAANYGVPQRRERVVFAGFRADLGIEWSFPEPTHS 222


>gi|239627884|ref|ZP_04670915.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518030|gb|EEQ57896.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 325

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           +KA D+G    R+R+Y + F      +F FP        + D L + +D+   I
Sbjct: 144 LKASDYGCATIRKRIYFVCFRKDLKAKFSFPESFESNIAVEDFLNQEVDEHYYI 197


>gi|49476997|ref|YP_035183.1| modification methylase DdeI; cytosine-specific methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49328553|gb|AAT59199.1| modification methylase DdeI; possible cytosine-specific
           methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 450

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLG 34
           +   ++GVPQ RER++I+   N   +  F +P    
Sbjct: 193 LNCANYGVPQNRERVFIVGINNKYENTYFSYPQQTH 228


>gi|298735876|ref|YP_003728401.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|298355065|emb|CBI65937.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 312

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 139 LNSTDFQLAQKRERLYIVGFRKDLKHPFHFPLGLANDYYFEDFLDAD 185


>gi|257438608|ref|ZP_05614363.1| modification methylase NgoMIV [Faecalibacterium prausnitzii A2-165]
 gi|257198937|gb|EEU97221.1| modification methylase NgoMIV [Faecalibacterium prausnitzii A2-165]
          Length = 293

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFP-TPLGIKPRLGDIL 43
           + A D+GVPQ R R+ I+         F++P       P +G+ L
Sbjct: 124 LNASDYGVPQLRPRVVIVGIRKDQAGAFEYPQEHPRESPTVGETL 168


>gi|256545597|ref|ZP_05472956.1| modification methylase HaeIII (cytosine-specificmethyltransferase
           HaeIII) [Anaerococcus vaginalis ATCC 51170]
 gi|256398722|gb|EEU12340.1| modification methylase HaeIII (cytosine-specificmethyltransferase
           HaeIII) [Anaerococcus vaginalis ATCC 51170]
          Length = 340

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKF-PTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GVPQ R+R++ + F    ++ F   P P   K    D +         + +   
Sbjct: 142 LNASDYGVPQDRKRVFYVGFRKDLNISFDLPPKPYDYKLTFRDAI-------YDLKDNAI 194

Query: 59  EGHQKRKENNKIAG 72
                  E NK  G
Sbjct: 195 PAL----EKNKTNG 204


>gi|281491831|ref|YP_003353811.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375542|gb|ADA65048.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 347

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           + A DFGVPQ+R R+  +   N   +F FP    +   + 
Sbjct: 153 LVASDFGVPQKRRRIVFVGLQNDVFDFNFPEFGMVTTEMA 192


>gi|237728463|ref|ZP_04558944.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
 gi|226909941|gb|EEH95859.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
          Length = 318

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK-PRLGDILEE 45
           + A D+GV Q R R+  +      +  F +P PL  + P +G++L +
Sbjct: 145 LNASDYGVSQLRPRVVFVGIRKDLAAGFSWPEPLKTEPPTVGELLHD 191


>gi|462651|sp|P34906|MTF1_FUSNU RecName: Full=Modification methylase FnuDI; Short=M.FnuDI; AltName:
           Full=Cytosine-specific methyltransferase FnuDI
 gi|2961231|gb|AAC05695.1| FnuDI DNA modification methyltransferase [Fusobacterium nucleatum]
          Length = 344

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GV Q RER++ + F        F+FP P+  K R           K  + + +W
Sbjct: 142 LNAFDYGVAQDRERVFYVGFRKDLNISNFEFPYPISEKER-----------KY-LKDSIW 189

Query: 59  EGHQKRKENNKIAGK 73
           +  +      K   K
Sbjct: 190 D-LKDNALPGKDKNK 203


>gi|322510870|gb|ADX06184.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 465

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDIL 43
           + A  + VPQ+RER++I+  L N    F+FP     K  L D+L
Sbjct: 288 LDASKYDVPQKRERVFIVGVLKNIDRSFEFPNESLTKKVLKDVL 331


>gi|182684309|ref|YP_001836056.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae CGSP14]
 gi|221232093|ref|YP_002511246.1| DNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|182629643|gb|ACB90591.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae CGSP14]
 gi|220674554|emb|CAR69117.1| putative DNA methylase [Streptococcus pneumoniae ATCC 700669]
          Length = 452

 Score = 51.1 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II       +   FP     +    + L         +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKGIRLLFPFRREGQATNSETLKTLGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 208 VYYSEGLAPTLVR--------GKGEGFKIAIP 231


>gi|168185144|ref|ZP_02619808.1| modification methylase SinI [Clostridium botulinum Bf]
 gi|182671812|gb|EDT83773.1| modification methylase SinI [Clostridium botulinum Bf]
          Length = 363

 Score = 51.1 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A D+G+ Q+RER++I+      + +F+FP     K
Sbjct: 172 INAADYGIAQKRERVFIVGIRKDLNKKFEFPEKTHNK 208


>gi|325912401|ref|ZP_08174796.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
           143-D]
 gi|325475743|gb|EGC78914.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
           143-D]
          Length = 336

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIKRESFVFPQPFKLNRFVENFLLPD 199


>gi|309809622|ref|ZP_07703479.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170103|gb|EFO72139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 336

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERESFVFPQPFKLNRFVENFLLPD 199


>gi|259500984|ref|ZP_05743886.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
 gi|302190566|ref|ZP_07266820.1| DNA-cytosine methyltransferase [Lactobacillus iners AB-1]
 gi|259167678|gb|EEW52173.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
          Length = 336

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERESFVFPQPFKLNRFVENFLLPD 199


>gi|169832810|ref|YP_001694558.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995312|gb|ACA35924.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
          Length = 452

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II           FP     +    + L         +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKGTRLLFPFRREGQATNSETLKILGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGF 75
              S  L     +        G+GF
Sbjct: 208 VYYSEGLAPTLVR------SKGEGF 226


>gi|315222611|ref|ZP_07864500.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
 gi|315188297|gb|EFU22023.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
          Length = 317

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A DFG+PQ+RER++++  L  +  F F +   I+ + +   LEE + +  
Sbjct: 153 LNAMDFGIPQKRERIFVVSILGENY-FNFSSLEKIEAKDISKFLEEDVSNLY 203


>gi|293975|gb|AAB59071.1| cytosine methylase [Neisseria gonorrhoeae]
          Length = 341

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 156 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPK--------GSTVEDK--DKITLKDVIWD 204


>gi|289423000|ref|ZP_06424820.1| modification methylase ScrFIB [Peptostreptococcus anaerobius 653-L]
 gi|289156574|gb|EFD05219.1| modification methylase ScrFIB [Peptostreptococcus anaerobius 653-L]
          Length = 329

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLWE 59
           + A +FG+PQ+RER++++  L  +  F F      + R + + LE+   +         E
Sbjct: 165 LNAIEFGIPQKRERIFVVSIL-GNNSFDFAKLEKTQTRDISEFLEKDASNLY---EVRQE 220

Query: 60  GHQKRKENNKIAGKGF 75
              +     +     F
Sbjct: 221 SMLRY-IRGEPKNNNF 235


>gi|322372404|ref|ZP_08046940.1| modification methylase DdeI [Streptococcus sp. C150]
 gi|321277446|gb|EFX54515.1| modification methylase DdeI [Streptococcus sp. C150]
          Length = 387

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A DFGVPQ RER+++I          E+ FP  + +   +   L + I D   + N  
Sbjct: 169 INAKDFGVPQNRERVFLIGVRKDLKIKSEWIFPEAMTLNNEIT--LRDAISDLPILGNNE 226

Query: 58  WEGHQ 62
            + + 
Sbjct: 227 QKYNY 231


>gi|212632918|ref|YP_002309443.1| site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
 gi|212554402|gb|ACJ26856.1| Site-specific DNA-methyltransferase (cytosine-specific) [Shewanella
           piezotolerans WP3]
          Length = 412

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEH--IDDKSTISN 55
           +KA  + VPQ+RERL ++        S +F +P+P      L D  E+    D K   S 
Sbjct: 221 LKAIFYKVPQKRERLILVGVRKDLATSAKFSWPSPYKRIMTLKDAFEKGELFDSKVEESP 280

Query: 56  KLWEGHQKRKE 66
              E  Q++KE
Sbjct: 281 G-QEYPQRKKE 290


>gi|254003164|ref|YP_003052630.1| C-5 cytosine-specific DNA methylase [Methylovorus sp. SIP3-4]
 gi|253987247|gb|ACT52103.1| C-5 cytosine-specific DNA methylase [Methylovorus sp. SIP3-4]
          Length = 550

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKP-RLGDILEEHIDDKSTISNKLW 58
           +   ++G  + R+R  ++   +    +F    P   +P RLGD+LEE       + +  W
Sbjct: 285 LNGKEWGTLENRDRWVMVAVTHGIEFDFSQLIPPDARPMRLGDVLEEVP-----LDDPRW 339

Query: 59  ---EGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
              +  + ++  +   GK F   +F E+S    TL+  Y K
Sbjct: 340 NKMQYLKDKEVRDAAEGKNFKMQIFTEDSEHIGTLTKGYAK 380


>gi|83854666|ref|ZP_00948196.1| DNA modification methylase M.NGOI [Sulfitobacter sp. NAS-14.1]
 gi|83842509|gb|EAP81676.1| DNA modification methylase M.NGOI [Sulfitobacter sp. NAS-14.1]
          Length = 254

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDILEE 45
           + A D+GVPQ R R+ I+       + F +P P     P +G+ L++
Sbjct: 80  LNASDYGVPQLRPRVVIVALPKDRADFFDWPEPNPHNPPTVGETLKD 126


>gi|281420197|ref|ZP_06251196.1| modification methylase HgiDII [Prevotella copri DSM 18205]
 gi|281405692|gb|EFB36372.1| modification methylase HgiDII [Prevotella copri DSM 18205]
          Length = 353

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGD 41
           + A D+GVPQRR+R+ I+          F++P P   K  + +
Sbjct: 157 LDAQDYGVPQRRKRVVIVGERKDHKIPLFEYPKPQEHKITVRE 199


>gi|323691274|ref|ZP_08105549.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323504614|gb|EGB20401.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 324

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A +FG+PQ RER++ +  LN   +F+F   +    R L + LE+ + D  
Sbjct: 164 LDAREFGLPQARERVFTVSVLNGE-KFEFDDLIRTPMRNLQEFLEDDVPDIY 214


>gi|330891417|gb|EGH24078.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 201

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDILEE 45
           + A DFGV Q R R+  +       E F +P P L I P +G++L +
Sbjct: 152 LNASDFGVTQLRPRVVFVGIRKDLAEGFSWPEPKLIIPPTVGELLHD 198


>gi|315653956|ref|ZP_07906872.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
 gi|315488652|gb|EFU78298.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
          Length = 336

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIKRESFVFPQPFKLNRFVENFLLPD 199


>gi|312874304|ref|ZP_07734336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
 gi|311090177|gb|EFQ48589.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2052A-d]
          Length = 336

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERESFVFPQPFKLNRFVENFLLPD 199


>gi|59802113|ref|YP_208825.1| DcmB [Neisseria gonorrhoeae FA 1090]
 gi|268593822|ref|ZP_06127989.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
           gonorrhoeae 35/02]
 gi|268597735|ref|ZP_06131902.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
           gonorrhoeae FA19]
 gi|291042825|ref|ZP_06568566.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria gonorrhoeae
           DGI2]
 gi|293398154|ref|ZP_06642359.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|44873|emb|CAA30038.1| unnamed protein product [Neisseria gonorrhoeae]
 gi|44888|emb|CAA36888.1| NgoPII restriction and modification [Neisseria gonorrhoeae]
 gi|293960|gb|AAA17019.1| cytosine methylase [Neisseria gonorrhoeae]
 gi|59719008|gb|AAW90413.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
           gonorrhoeae FA 1090]
 gi|268547211|gb|EEZ42629.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
           gonorrhoeae 35/02]
 gi|268551523|gb|EEZ46542.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
           gonorrhoeae FA19]
 gi|291013259|gb|EFE05225.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria gonorrhoeae
           DGI2]
 gi|291611417|gb|EFF40487.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|227054|prf||1613419B NgoPII methylase
          Length = 341

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 156 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPK--------GSTVEDK--DKITLKDVIWD 204


>gi|312874943|ref|ZP_07734962.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
 gi|311089688|gb|EFQ48113.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
          Length = 336

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEH 46
           +   ++G+PQ+RER+Y++ F N      F FP P  +   + + L   
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIKRESFVFPQPFKLNRFVENFLLPD 199


>gi|1399076|gb|AAB03209.1| NgoII cytosine methylase M.NgoII [Neisseria gonorrhoeae]
          Length = 341

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 156 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPK--------GSTVEDK--DKITLKDVIWD 204


>gi|17548155|ref|NP_521557.1| DNA modification cytosine-specific methyltransferase [Ralstonia
           solanacearum GMI1000]
 gi|17430462|emb|CAD16935.1| probable site-specific dna methylase protein [Ralstonia
           solanacearum GMI1000]
          Length = 364

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKF--PTPLGIKPRLGDILEEHIDDKST---IS 54
           + A ++ VPQ RERL ++ F  +   +  +  P P   +  + + +    +       ++
Sbjct: 154 LNAANYSVPQNRERLIMVGFNRDLYPDLTWLPPGPKNARLTVREAIGALPEPTYFQRNLT 213

Query: 55  NKLWEGHQKR 64
           NK    H   
Sbjct: 214 NKDIPHHPNH 223


>gi|225863800|ref|YP_002749178.1| cytosine-specific methyltransferase NlaX [Bacillus cereus 03BB102]
 gi|225788166|gb|ACO28383.1| cytosine-specific methyltransferase NlaX [Bacillus cereus 03BB102]
          Length = 576

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP---TPLGIKPRLGDILEEHIDDKSTISNK 56
           + + DFGVPQ RER++II  L  +   + FP      G    +G + E + D    +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHLRGTCGREVFPIRRKNEGSINIVGYLSEGYKDVNYVLDPK 207


>gi|219871000|ref|YP_002475375.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
           parasuis SH0165]
 gi|219691204|gb|ACL32427.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
           parasuis SH0165]
          Length = 295

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTI----S 54
           + +  +GVPQ RER+Y +          F+FPTP  IK    DI E  I+++  I    +
Sbjct: 121 LDSQFYGVPQMRERIYFVGIRKDIKHKPFEFPTPEPIK----DIAECLIEERDYIFDENN 176

Query: 55  NKLWEGHQKRKENNK 69
               +    +  NNK
Sbjct: 177 PTFQKYLHNKYNNNK 191


>gi|194099965|ref|YP_002003104.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|239997973|ref|ZP_04717897.1| Modification methylase NgoPII [Neisseria gonorrhoeae 35/02]
 gi|240015049|ref|ZP_04721962.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI18]
 gi|240017498|ref|ZP_04724038.1| Modification methylase NgoPII [Neisseria gonorrhoeae FA6140]
 gi|240122118|ref|ZP_04735080.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID24-1]
 gi|240124411|ref|ZP_04737367.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID332]
 gi|240124717|ref|ZP_04737603.1| Modification methylase NgoPII [Neisseria gonorrhoeae SK-92-679]
 gi|254494673|ref|ZP_05107844.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|260439589|ref|ZP_05793405.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI2]
 gi|268599983|ref|ZP_06134150.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|268602320|ref|ZP_06136487.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|268683040|ref|ZP_06149902.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268683292|ref|ZP_06150154.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687469|ref|ZP_06154331.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|462655|sp|P08455|MTP2_NEIGO RecName: Full=Modification methylase NgoPII; Short=M.NgoPII;
           AltName: Full=Cytosine-specific methyltransferase NgoPII
 gi|193935255|gb|ACF31079.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|226513713|gb|EEH63058.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|268584114|gb|EEZ48790.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|268586451|gb|EEZ51127.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|268623324|gb|EEZ55724.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268623576|gb|EEZ55976.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627753|gb|EEZ60153.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|317165417|gb|ADV08958.1| DcmB [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 330

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 145 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPK--------GSTVEDK--DKITLKDVIWD 193


>gi|240081638|ref|ZP_04726181.1| DcmB [Neisseria gonorrhoeae FA19]
 gi|240113919|ref|ZP_04728409.1| DcmB [Neisseria gonorrhoeae MS11]
 gi|240116652|ref|ZP_04730714.1| DcmB [Neisseria gonorrhoeae PID18]
 gi|240129088|ref|ZP_04741749.1| DcmB [Neisseria gonorrhoeae SK-93-1035]
          Length = 325

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 140 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPK--------GSTVEDK--DKITLKDVIWD 188


>gi|332075476|gb|EGI85945.1| modification methylase HpaII [Streptococcus pneumoniae GA41301]
          Length = 452

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVPQ RER++II           FP     +    + L         +  +  K
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKGTRLLFPFRREGQATNSETLKTLGNLNPSKSGMSGK 207

Query: 51  STISNKLWEGHQKRKENNKIAGKGFGYGLFFE 82
              S  L     +        GKG G+ +   
Sbjct: 208 VYYSEGLAPTLVR--------GKGEGFKIAIP 231


>gi|217032692|ref|ZP_03438178.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
 gi|216945622|gb|EEC24273.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
          Length = 211

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q+RERLYI+ F       F FP  L       D L+  
Sbjct: 139 LNSTDFQLAQKRERLYIVGFRKDLKHPFHFPLGLANDYYFEDFLDAD 185


>gi|217964683|ref|YP_002350361.1| cytosine-specific methyltransferase [Listeria monocytogenes HCC23]
 gi|217333953|gb|ACK39747.1| cytosine-specific methyltransferase [Listeria monocytogenes HCC23]
          Length = 340

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKP 37
           + + DFGVPQ RER++II  L  +   + FP     + 
Sbjct: 148 LNSKDFGVPQNRERVFIIGHLRGAGGREIFPLAEASRT 185


>gi|332361999|gb|EGJ39801.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK49]
          Length = 480

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEE 45
           + + DFGVPQ RER++II           FP     +    + L+E
Sbjct: 176 LNSKDFGVPQNRERVFIIGHSRKKGTRLLFPFRREGQATNSETLKE 221


>gi|319639602|ref|ZP_07994349.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399173|gb|EFV79847.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 327

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFP-TPLGIKPRLGD----ILEEHI------D 48
           + A +FG+PQ+RER++++         + FP      +P L       LE+ I      +
Sbjct: 157 LLAANFGIPQKRERVFMVGVRKDIQKHYTFPMETHAEQPNLYQKPFVKLEKIITTLAIDN 216

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSA 92
            K   S K   G +   +NN   G      L+ +      T++A
Sbjct: 217 PKYYFSEKAVLGMKN-AKNNMKRG------LYQDLQGQCLTITA 253


>gi|148555377|ref|YP_001262959.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
 gi|148500567|gb|ABQ68821.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
          Length = 412

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A  FGVPQ RER++I+        FKFP P  
Sbjct: 169 LNAASFGVPQLRERVFIVASREGK-NFKFPQPTH 201


>gi|329768652|ref|ZP_08260136.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
 gi|328836366|gb|EGF86031.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
          Length = 427

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPRLGDILEEHIDDK 50
           + + +FGVPQ RER++I+  L     +K FP     K       E   + K
Sbjct: 148 LNSKNFGVPQNRERVFIVGHLRGGCTYKVFPIQGENK-------EPDFEPK 191


>gi|308229518|gb|ADO24171.1| M.AciI [Arthrobacter citreus]
          Length = 703

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--------SVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           M A D+GVPQ R R Y +   N         + EF FP    +   +   +E        
Sbjct: 525 MNAKDYGVPQNRNRWYCVGINNDLGVVSTSMNSEF-FPEKEELTTFIDSFIETTFLPTYE 583

Query: 53  ISN 55
           +S 
Sbjct: 584 VSE 586



 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 29/86 (33%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLG------------------- 40
           + + + G+PQ R+R YI+   + P+ +F+          L                    
Sbjct: 165 INSNEAGLPQNRDRTYIVGIKDFPTEKFEEDKRSKKISCLKKELNELEFHGFNFFNNVNF 224

Query: 41  --------DILEEHIDDKSTI-SNKL 57
                   DIL++ +D K    S K+
Sbjct: 225 YNESQIISDILDDIVDKKYYFNSEKM 250


>gi|268604583|ref|ZP_06138750.1| cytosine methylase [Neisseria gonorrhoeae PID1]
 gi|268588714|gb|EEZ53390.1| cytosine methylase [Neisseria gonorrhoeae PID1]
          Length = 341

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP    ++ +          DK T+ + +W+
Sbjct: 156 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPKGSTVENK----------DKITLKDVIWD 204


>gi|307570754|emb|CAR83933.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
 gi|307572166|emb|CAR85345.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
          Length = 426

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKP 37
           + + DFGVPQ RER++II  L  +   + FP     + 
Sbjct: 148 LNSKDFGVPQNRERVFIIGHLRGAGGREIFPLAEASRT 185


>gi|268680341|ref|YP_003304772.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618372|gb|ACZ12737.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 335

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+ VPQ R+RL+ + F    ++ F+FP    +K  L D++
Sbjct: 143 LNAHDYKVPQDRQRLFFVGFRKDLNMTFEFPKAFPLKRYLKDVI 186


>gi|10955252|ref|NP_052188.1| DNA-methyltransferase [Escherichia coli]
 gi|1237268|gb|AAC37145.1| eco29kIM [Escherichia coli]
 gi|2660513|emb|CAA04944.1| DNA-methyltransferase [Escherichia coli]
          Length = 382

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + A D+GVPQ RER+ I+    + + ++ FP+    + +L  + E+H+    
Sbjct: 170 INAADYGVPQIRERVIIVGVRSDLNKKWSFPSVTHTQEKL--LWEQHVTGDY 219


>gi|19718332|ref|NP_604405.1| plasmid encoded methyltransferase Pem [Salmonella enteritidis]
 gi|19526586|gb|AAL87019.1| plasmid encoded methyltransferase Pem [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 382

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + A D+GVPQ RER+ I+    + + ++ FP+    + +L  + E+H+    
Sbjct: 170 INAADYGVPQIRERVIIVGVRSDLNKKWSFPSVTHTQEKL--LWEQHVTGDY 219


>gi|296313785|ref|ZP_06863726.1| modification methylase NgoPII [Neisseria polysaccharea ATCC 43768]
 gi|296839714|gb|EFH23652.1| modification methylase NgoPII [Neisseria polysaccharea ATCC 43768]
          Length = 330

 Score = 50.7 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW- 58
           + A D+GV Q R+R++ I F     ++F FPT       + D      +DK T+ + +W 
Sbjct: 144 VNAKDYGVAQERKRVFYIGFRKDLKIKFSFPTGS----TVKD------EDKITLKDIIWD 193

Query: 59  -------EGHQKRKENNKIAGKGFGYGLFFE 82
                     Q +   N I    +  G F  
Sbjct: 194 LQDTAVPAAFQNKANPNAINNNEYFIGSFSP 224


>gi|240118874|ref|ZP_04732936.1| DcmB [Neisseria gonorrhoeae PID1]
          Length = 325

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP    ++ +          DK T+ + +W+
Sbjct: 140 NAKDYGVAQERKRVFYIGFRKDLEIKFSFPKGSTVENK----------DKITLKDVIWD 188


>gi|312386601|emb|CBY05924.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DFGVPQ RER++II           FP
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKRGTRLLFP 178


>gi|297621903|ref|YP_003710040.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
 gi|297377204|gb|ADI39034.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
          Length = 410

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           +K+  + VPQ+RERL+I+   N      +FK+P+P      L D L++  + D    ++ 
Sbjct: 220 LKSIFYQVPQKRERLFIVGVRNDLVKKAKFKWPSPFKKVLTLKDALKQGSLYDSDVPTSN 279

Query: 57  LWEGHQKRKE 66
                Q++KE
Sbjct: 280 GQLYPQRKKE 289


>gi|313891845|ref|ZP_07825450.1| putative modification methylase HhaI [Dialister microaerophilus
           UPII 345-E]
 gi|313119839|gb|EFR43026.1| putative modification methylase HhaI [Dialister microaerophilus
           UPII 345-E]
          Length = 394

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPRLGDILEEHIDDKST 52
            + D+GVPQ RER+YI+  L      +  P     +  L  +++    D+  
Sbjct: 153 NSKDYGVPQNRERVYIVGHLGERCGRELLPVARKSERALKKVIDGSQGDRVY 204


>gi|167854495|ref|ZP_02477276.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Haemophilus
           parasuis 29755]
 gi|219872138|ref|YP_002476513.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA methylase
           [Haemophilus parasuis SH0165]
 gi|167854250|gb|EDS25483.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Haemophilus
           parasuis 29755]
 gi|219692342|gb|ACL33565.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA methylase
           [Haemophilus parasuis SH0165]
          Length = 320

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFP 30
           +   ++GVPQ RER+ I+   N  + EF FP
Sbjct: 158 LNTANYGVPQTRERVIIVGVRNDLTSEFFFP 188


>gi|315917403|ref|ZP_07913643.1| type II restriction-modification system methylation subunit
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691278|gb|EFS28113.1| type II restriction-modification system methylation subunit
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 320

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A DFG+PQ+RER++++  L  +  F F      + R + + +E+   +  
Sbjct: 154 LNAMDFGIPQKRERIFVVSIL-GNNSFDFAKLEKTQTRDISEFIEKDASNLY 204


>gi|257466246|ref|ZP_05630557.1| Type II restriction-modification system methylation subunit
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 327

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A DFG+PQ+RER++++  L  +  F F      + R + + +E+   +  
Sbjct: 161 LNAMDFGIPQKRERIFVVSIL-GNNSFDFAKLEKTQTRDISEFIEKDASNLY 211


>gi|289167633|ref|YP_003445902.1| methyl transferase [Streptococcus mitis B6]
 gi|288907200|emb|CBJ22035.1| methyl transferase [Streptococcus mitis B6]
          Length = 452

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DFGVPQ RER++II           FP
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKRGTRLLFP 178


>gi|118577457|ref|YP_899696.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118504962|gb|ABL01443.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 313

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           A D+GVPQ RER++I+       +F  P P+  K
Sbjct: 162 AADYGVPQTRERVFIVGTRPDVQKFIPPKPVCSK 195


>gi|91201234|emb|CAJ74294.1| similar to site-specific DNA-methyltransferase (cytosine-specific)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 313

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           A D+GVPQ RER++I+        F  P P+  K
Sbjct: 162 AEDYGVPQTRERVFIVGTRPDVSRFTPPEPVCDK 195


>gi|326563801|gb|EGE14052.1| type II DNA modification enzyme [Moraxella catarrhalis 46P47B1]
 gi|326566814|gb|EGE16953.1| type II DNA modification enzyme [Moraxella catarrhalis 103P14B1]
 gi|326576727|gb|EGE26634.1| type II DNA modification enzyme [Moraxella catarrhalis 101P30B1]
          Length = 327

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKS-TISNKL 57
           + +  +GVPQ R+R+Y +          FKFP P+  KP + D L +  D +    +   
Sbjct: 144 LDSQYYGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTF 202

Query: 58  WEGHQKRKENNK 69
            +    +   N+
Sbjct: 203 QKYLASKYNKNQ 214


>gi|322412375|gb|EFY03283.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 401

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 98  LNSKDFQVPQNRERIFIIGHSRRYRPRFLFP 128


>gi|218900599|ref|YP_002449010.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218543463|gb|ACK95857.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKST-ISNKLWE 59
              D+GVPQ+RER+  I   N  + E++FP P   +    D+  ++   +   IS  L  
Sbjct: 143 NLADYGVPQKRERVIFIGVRNDMNFEYEFPMPTHEENPTFDLFNQNALQRWVSISEVL-A 201

Query: 60  GHQKRKENNK-----------IAGKGF-GYGLFFENSATTNTLSAR 93
           G  +  E++K           I  K F G+ +   +   + T+ AR
Sbjct: 202 GLPEPSEDSKILNHVCSNYKIIENKNFTGHRMINPDKP-SPTILAR 246


>gi|109946722|ref|YP_663950.1| cytosine specific DNA methyltransferase fragment 2 [Helicobacter
          acinonychis str. Sheeba]
 gi|109713943|emb|CAJ98951.1| cytosine specific DNA methyltransferase fragment 2 [Helicobacter
          acinonychis str. Sheeba]
          Length = 101

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
          + A D+GVPQ RER +I+   + S +F    P   
Sbjct: 45 LNAKDYGVPQSRERAFIVGATHFSFDFNLLEPSQS 79


>gi|332523411|ref|ZP_08399663.1| modification methylase HpaII [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314675|gb|EGJ27660.1| modification methylase HpaII [Streptococcus porcinus str. Jelinkova
           176]
          Length = 451

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 148 LNSKDFQVPQNRERIFIIGHSRRFRPRFLFP 178


>gi|86137701|ref|ZP_01056277.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
 gi|85825293|gb|EAQ45492.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
          Length = 319

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDIL 43
           + A DFGVPQ R R+ I+       + F +P P     P +G+ L
Sbjct: 145 LNASDFGVPQLRPRVAIVALRKEYSDQFNWPDPLPHNPPTVGETL 189


>gi|326567346|gb|EGE17461.1| type II DNA modification enzyme [Moraxella catarrhalis BC1]
          Length = 327

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKS-TISNKL 57
           + +  +GVPQ R+R+Y +          FKFP P+  KP + D L +  D +    +   
Sbjct: 144 LDSQYYGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTF 202

Query: 58  WEGHQKRKENNK 69
            +    +   N+
Sbjct: 203 QKYLASKYNKNQ 214


>gi|326560963|gb|EGE11328.1| type II DNA modification enzyme [Moraxella catarrhalis 7169]
 gi|326575187|gb|EGE25115.1| type II DNA modification enzyme [Moraxella catarrhalis CO72]
          Length = 322

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKS-TISNKL 57
           + +  +GVPQ R+R+Y +          FKFP P+  KP + D L +  D +    +   
Sbjct: 139 LDSQYYGVPQMRQRVYFVGIRKDIKHMPFKFPQPILSKP-IDDFLSDDRDYEFDVNNPTF 197

Query: 58  WEGHQKRKENNK 69
            +    +   N+
Sbjct: 198 QKYLASKYNKNQ 209


>gi|306833678|ref|ZP_07466805.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424448|gb|EFM27587.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 451

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRNRSRFLFPLRGEDSPAHLERLGNI 194


>gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 468

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ RER+  +   N 
Sbjct: 268 INAKDYGVPQHRERIIFVAVRND 290


>gi|291320302|ref|YP_003515564.1| cytosine specific methyltransferase [Mycoplasma agalactiae]
 gi|290752635|emb|CBH40608.1| Cytosine specific methyltransferase [Mycoplasma agalactiae]
          Length = 339

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+ V Q+RERL +I   N     ++F FPT    K  L DIL
Sbjct: 153 LNALDYNVAQKRERLIVIGIRNDIVNKIKFSFPTKSKNKLVLKDIL 198


>gi|194396841|ref|YP_002037999.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
           pneumoniae G54]
 gi|194356508|gb|ACF54956.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
           pneumoniae G54]
          Length = 452

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DFGVPQ RER++II           FP
Sbjct: 148 LNSKDFGVPQNRERVFIIGHSRKKGTRLLFP 178


>gi|127447|sp|P25266|MTE1_HERAU RecName: Full=Modification methylase HgiEI; Short=M.HgiEI; AltName:
           Full=Cytosine-specific methyltransferase HgiEI
 gi|43471|emb|CAA38944.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 50.3 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILE 44
           + + DFGV Q R+R++I+          F FP       RL  IL+
Sbjct: 146 LNSFDFGVAQNRDRVFIVGIQQKLDLNGFSFPEYAESDQRLYHILD 191


>gi|258514794|ref|YP_003191016.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778499|gb|ACV62393.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 402

 Score = 50.3 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKST--ISNKL 57
           + A D+GVPQ R R+ I+ F N  +  + FP     +  L          + +  IS + 
Sbjct: 180 VNAADYGVPQSRHRVIIVGFRNDLNANWSFPDATHSQDAL----------RYSKWISGEY 229

Query: 58  WEGHQKRKEN 67
           WE H+  K  
Sbjct: 230 WEEHKIAKAK 239


>gi|309809233|ref|ZP_07703103.1| modification methylase HaeIII [Lactobacillus iners SPIN 2503V10-D]
 gi|308170467|gb|EFO72490.1| modification methylase HaeIII [Lactobacillus iners SPIN 2503V10-D]
          Length = 340

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKF-PTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GVPQ R+R++ + F    ++ F   P P   K    D +         + +   
Sbjct: 142 LNASDYGVPQDRKRVFYVGFRKDLNINFDIPPKPYDYKLTFRDAI-------YDLKDNAI 194

Query: 59  EGHQKRKENNKIAG 72
                  E NK  G
Sbjct: 195 PAL----EKNKTNG 204


>gi|294673665|ref|YP_003574281.1| prophage PRU01 DNA methylase, C-5 cytosine-specific family
           [Prevotella ruminicola 23]
 gi|294471747|gb|ADE81136.1| prophage PRU01, DNA methylase, C-5 cytosine-specific family
           [Prevotella ruminicola 23]
          Length = 330

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL----GIKPRLGDIL 43
           + A D+GV Q R+R++ I F N  +++FKFP         K  L DI+
Sbjct: 144 VNAKDYGVAQERKRVFYIGFRNDLNIDFKFPEGSTRDDKKKITLRDII 191


>gi|319757724|gb|ADV69666.1| DNA-cytosine methyltransferase [Streptococcus suis JS14]
          Length = 451

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFLFPLKRENSPAHLERLGNI 194


>gi|332361316|gb|EGJ39120.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK1056]
          Length = 454

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 151 LNSKDFQVPQNRERIFIIGHSRRYRPRFLFP 181


>gi|168490143|ref|ZP_02714342.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae SP195]
 gi|183571468|gb|EDT91996.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae SP195]
 gi|321157174|emb|CBW39159.1| Cytosine-specific DNA methyltransferase [Streptococcus phage 11865]
          Length = 360

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + + +FGVPQ RER++II  L      +F
Sbjct: 147 LNSKNFGVPQNRERVFIIGHLRRERTRRF 175


>gi|269214273|ref|ZP_05986228.2| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
 gi|269210330|gb|EEZ76785.1| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
          Length = 330

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
            A D+GV Q R+R++ I F     ++F FP         G  +E+   DK T+ + +W+
Sbjct: 145 NAKDYGVAQERKRVFYIGFRKDLEIQFSFPK--------GSTVEDK--DKITLRDVIWD 193


>gi|304311589|ref|YP_003811187.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
 gi|301797322|emb|CBL45542.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
          Length = 387

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ RER+ II    + ++ + FP P   + RL  + + H+  +       WE
Sbjct: 170 INAADYGVPQVRERVIIIGLRSDLNLNWSFPEPTHSQDRL--LWDIHVSGEY------WE 221

Query: 60  GHQKRKEN 67
            H+   + 
Sbjct: 222 QHRVSAKE 229


>gi|240143270|ref|ZP_04741871.1| modification methylase BspRI [Roseburia intestinalis L1-82]
 gi|257204748|gb|EEV03033.1| modification methylase BspRI [Roseburia intestinalis L1-82]
          Length = 432

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 16/80 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF--PTPLG------------IKPRLGDILEEH 46
           + + ++GVPQ RER+ ++   N  ++F++  P P              ++  +GD LE++
Sbjct: 226 LNSAEYGVPQIRERVILVGVRND-IDFEYVHPEPTHGYGVEGLKEVVTLRDAIGD-LEDN 283

Query: 47  IDDKSTISNKLWEGHQKRKE 66
             D  T S       + RK+
Sbjct: 284 PGDYFTGSYSTIFMSRNRKK 303


>gi|219724141|ref|YP_002477179.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
           burgdorferi 156a]
 gi|225575842|ref|YP_002724642.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
 gi|219693145|gb|ACL34349.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
           burgdorferi 156a]
 gi|225546742|gb|ACN92742.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
          Length = 311

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-----EFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A +FGVPQ RER+Y       +      ++  P     K  L DILE+ +     I
Sbjct: 142 LNASNFGVPQARERVYFACLRKDTGTSEKLKYSKPKETFKKIYLEDILEKDVPKSMYI 199


>gi|224796590|ref|YP_002641667.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|223929176|gb|ACN23896.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|312149869|gb|ADQ29935.1| DNA-cytosine methyltransferase [Borrelia burgdorferi N40]
          Length = 324

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-----EFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A +FGVPQ RER+Y       +      ++  P     K  L DILE+ +     I
Sbjct: 155 LNASNFGVPQARERVYFACLRKDTGTSEKLKYSKPKETFKKIYLEDILEKDVPKSMYI 212


>gi|319778406|ref|YP_004129319.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis MCE9]
 gi|317108430|gb|ADU91176.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis MCE9]
          Length = 160

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 1   MKACDFGVPQRRERLYIIDF 20
           + + +FGVPQ R+R+YI+ F
Sbjct: 141 LNSKNFGVPQNRKRIYIVAF 160


>gi|146318633|ref|YP_001198345.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|146320840|ref|YP_001200551.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751755|ref|YP_003024896.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|253755540|ref|YP_003028680.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|145689439|gb|ABP89945.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|145691646|gb|ABP92151.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251816044|emb|CAZ51664.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|251818004|emb|CAZ55786.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRPRFLFPLRRENSPAHLERLGNI 194


>gi|319744417|gb|EFV96775.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           agalactiae ATCC 13813]
          Length = 450

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 151 LNSKDFQVPQNRERIFIIGHSRRYRPRFLFP 181


>gi|288906872|emb|CBJ21706.1| type II DNA modification methyltransferase [Streptococcus mitis B6]
          Length = 380

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + +FGVPQ RER++II  L  +   K FP
Sbjct: 147 LNSKNFGVPQNRERVFIIGHLRGTSGRKVFP 177


>gi|225869346|ref|YP_002745294.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702622|emb|CAX00673.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 148 LNSKDFQVPQNRERIFIIGHSRRYRPRFLFP 178


>gi|294651999|ref|ZP_06729281.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822115|gb|EFF81036.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 336

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDK 50
           + A D+G+ Q R+R+  + F    +V + FP P+  K  L DI+ + ++DK
Sbjct: 145 LNATDYGIAQDRKRVIFLGFRKDLNVHYTFPEPIVKKLVLKDII-KDLEDK 194


>gi|168494837|ref|ZP_02718980.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168494899|ref|ZP_02719042.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168494952|ref|ZP_02719095.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168494999|ref|ZP_02719142.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575153|gb|EDT95681.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575203|gb|EDT95731.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575231|gb|EDT95759.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575300|gb|EDT95828.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 360

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFP 30
           + + +FGVPQ RER++II           FP
Sbjct: 147 LNSKNFGVPQNRERVFIIGHLRRERTRRIFP 177


>gi|229187780|ref|ZP_04314910.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228595683|gb|EEK53373.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 365

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER++II 
Sbjct: 150 LNSKDFGVPQNRERVFIIG 168


>gi|227874220|ref|ZP_03992420.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
 gi|227839928|gb|EEJ50358.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
          Length = 336

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDIL 43
           + A D+GV Q+RERL  I         ++++FP     KP L DIL
Sbjct: 152 LNAWDYGVAQKRERLITIGIRKDLEDKIKYEFPKVYEYKPLLKDIL 197


>gi|225858823|ref|YP_002740333.1| methyl transferase [Streptococcus pneumoniae 70585]
 gi|225720620|gb|ACO16474.1| methyl transferase [Streptococcus pneumoniae 70585]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFLFPLRRENSPAHLERLGNI 194


>gi|186683211|ref|YP_001866407.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594714|gb|AAK68647.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
           73102]
 gi|186465663|gb|ACC81464.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GVPQ RERL++I         K+P P+  KP L + L         +S  +W+
Sbjct: 161 LNAANYGVPQSRERLFLIGAREDVELPKYPQPI-TKPALPNNLTSKKISNIPLSPTVWD 218


>gi|223933016|ref|ZP_03625010.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223898333|gb|EEF64700.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRPRFLFPLRGENSPAHLERLGNI 194


>gi|322411604|gb|EFY02512.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 148 LNSKDFQVPQNRERIFIIGHSRRYRPRFLFP 178


>gi|226223282|ref|YP_002757389.1| type II DNA modification enzyme (methyltransferase) [Listeria
           monocytogenes Clip81459]
 gi|225875744|emb|CAS04447.1| Putative type II DNA modification enzyme (methyltransferase)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
          Length = 389

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPL 33
           + A  FGVPQ RER++++           ++FP  L
Sbjct: 169 LNAKHFGVPQNRERVFLLGIRKDLEIKQNWEFPERL 204


>gi|1709163|sp|P50188|MTN1_NOCAE RecName: Full=Modification methylase NaeI; Short=M.NaeI; AltName:
           Full=Cytosine-specific methyltransferase NaeI
 gi|775103|gb|AAC43325.1| NaeI modification methyltransferase [Lechevalieria aerocolonigenes]
          Length = 413

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           + A DFGVPQ R R  ++   N     F +P P G  P +G+ L++
Sbjct: 148 LHASDFGVPQLRPRFVLVALQNKFAPYFTWPEPTGAAPTVGETLKD 193


>gi|268610192|ref|ZP_06143919.1| cytosine-specific DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 475

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 22/95 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-------------SVEFKFPTPLGIKPRLGD---ILE 44
           +   DFG+PQ RER+YI+                    + +       K ++GD   ILE
Sbjct: 204 LSPSDFGIPQIRERVYILGIRRDIRNQQILTNGFIHIEDLQLDKHFK-KCKMGDAWSILE 262

Query: 45  EHIDDKSTISNK----LWEGHQKRKENNKIAGKGF 75
           + +DD   IS +    +    + RK  N I   GF
Sbjct: 263 DEVDDSYIISEEKEQMILAWEEFRKATN-IKVIGF 296


>gi|223932228|ref|ZP_03624232.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223899209|gb|EEF65566.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFIFPLRRENSPAHLERLGNI 194


>gi|319744643|gb|EFV96990.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           agalactiae ATCC 13813]
          Length = 451

 Score = 49.5 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFIFPLRRENSPAHLERLGNI 194


>gi|157419765|gb|ABV55454.1| DNA methylase [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 451

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFIFPLRREDSPAHLERLGNI 194


>gi|22537444|ref|NP_688295.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           2603V/R]
 gi|76797962|ref|ZP_00780222.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           18RS21]
 gi|77406085|ref|ZP_00783160.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae H36B]
 gi|313890485|ref|ZP_07824113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|22534321|gb|AAN00168.1|AE014251_12 C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           2603V/R]
 gi|76586686|gb|EAO63184.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           18RS21]
 gi|77175318|gb|EAO78112.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae H36B]
 gi|313121002|gb|EFR44113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|323127117|gb|ADX24414.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 451

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFIFPLRREDSPAHLERLGNI 194


>gi|332673536|gb|AEE70353.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 434

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + A DFGV Q RERLYI+  L+ +++   FP
Sbjct: 175 LNAKDFGVAQNRERLYIVGNLSCTIDLDHFP 205


>gi|308235652|ref|ZP_07666389.1| DcmB [Gardnerella vaginalis ATCC 14018]
 gi|311115197|ref|YP_003986418.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310946691|gb|ADP39395.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 333

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I F    +++F FP              E  + K T+ + +W+
Sbjct: 148 VNAKDYGVAQDRKRVFYIGFRKDLNIKFSFPKGST----------EDDEKKLTLKDVIWD 197


>gi|67924690|ref|ZP_00518097.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67853467|gb|EAM48819.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 420

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 25/91 (27%)

Query: 1   MKACDFGVPQRRERLYIID---------------------FLNPSVEFKFPTPLGIKPR- 38
           + + +F VPQ R R+YI+                      F    ++     P+    + 
Sbjct: 146 LNSSNFNVPQNRVRIYIVGKKGSQPNLTIKSDKGAIDSHSFKKNIIQGDLFAPINYPTKP 205

Query: 39  --LGDILEEHIDDKSTISNKLWEGHQKRKEN 67
             + DIL++ +++K   S +       R   
Sbjct: 206 LTVKDILKDIVEEKYFCSQEF-TNLLNRAVR 235


>gi|153940750|ref|YP_001392502.1| hypothetical protein CLI_3290 [Clostridium botulinum F str.
           Langeland]
 gi|152936646|gb|ABS42144.1| conserved domain protein [Clostridium botulinum F str. Langeland]
          Length = 338

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFP 30
           + + DFGVPQ RER++II      S    FP
Sbjct: 151 INSRDFGVPQNRERVFIIGHLRERSTRKIFP 181


>gi|309808410|ref|ZP_07702309.1| putative modification methylase HhaI [Lactobacillus iners LactinV
           01V1-a]
 gi|308168238|gb|EFO70357.1| putative modification methylase HhaI [Lactobacillus iners LactinV
           01V1-a]
          Length = 198

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGI 35
           +   ++G+PQ+RER+Y++ F N      F FP P  +
Sbjct: 152 LNPINYGIPQKRERVYMVCFRNDIERESFVFPQPFKL 188


>gi|253755079|ref|YP_003028219.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|251817543|emb|CAZ55290.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP----RLGDI 42
           + + DF VPQ RER++II         F FP      P    RLG+I
Sbjct: 148 LNSKDFQVPQNRERVFIIGHSRRYRSRFIFPLRGENSPAHLERLGNI 194


>gi|254467362|ref|ZP_05080773.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206688270|gb|EDZ48752.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 319

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
           + A DFGVPQ R R+ I+      S +F +P PL   P 
Sbjct: 145 LNASDFGVPQLRPRVAIVALRKEFSGQFNWPEPLPHNPP 183


>gi|302387870|ref|YP_003823692.1| DNA-cytosine methyltransferase [Clostridium saccharolyticum WM1]
 gi|302198498|gb|ADL06069.1| DNA-cytosine methyltransferase [Clostridium saccharolyticum WM1]
          Length = 569

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDIL 43
           + +  FGVPQ RER+Y++  F        FP        +  ++
Sbjct: 178 VNSKHFGVPQHRERVYLVGHFGGIRGRKVFPIGGANTAPVKQLI 221


>gi|194337838|ref|YP_002019632.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310315|gb|ACF45015.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 409

 Score = 49.5 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ RER+ I+      +   +  P+        + + ++  +       WE 
Sbjct: 170 INAADYGVPQTRERVVIVG-TRADISLPWSFPIETHSEDRLLWDMYVTGEY------WER 222

Query: 61  HQKRK 65
           H+  K
Sbjct: 223 HKVHK 227


>gi|148252729|ref|YP_001237314.1| putative 5-methylcytosine methyltransferase [Bradyrhizobium sp.
           BTAi1]
 gi|146404902|gb|ABQ33408.1| putative 5-methylcytosine methyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 381

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A DFGVPQ R R++I+ F    V+
Sbjct: 179 INARDFGVPQNRRRVFILGFDRRRVD 204


>gi|227874774|ref|ZP_03992927.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris ATCC 35243]
 gi|227844549|gb|EEJ54705.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris ATCC 35243]
          Length = 420

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQRR R++++ F +     + FP P      L    E         S + W 
Sbjct: 198 VDAADYGVPQRRHRVFMVGFRSDVDAGWNFPAPTHSASALRAAQE---------SGEYW- 247

Query: 60  GHQKRKENNKIAGKG 74
                 E ++IA KG
Sbjct: 248 ------ERHRIAIKG 256


>gi|305666023|ref|YP_003862310.1| putative DNA modification methylase [Maribacter sp. HTCC2170]
 gi|88710798|gb|EAR03030.1| putative DNA modification methylase (N.MgoV) [Maribacter sp.
           HTCC2170]
          Length = 493

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + + D+G+PQ R R+YII F +      FK P       +L   LE+    + 
Sbjct: 145 INSHDYGLPQNRIRVYIIGFKDKRYLDSFKLPDKPLNGHKLFQHLEDLPKPQF 197


>gi|313683546|ref|YP_004061284.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
 gi|313156406|gb|ADR35084.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
          Length = 332

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDIL 43
           + A DFGVPQ R R+ ++         F +P      P +G+ L
Sbjct: 154 INAKDFGVPQLRPRVILVGLRKNIFPYFSWPDSYLEAPTVGEAL 197


>gi|317012300|gb|ADU82908.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori Lithuania75]
          Length = 348

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F  P P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGTLKSFKQKFHSPKPIKTHFSLKDAL 188


>gi|238801891|ref|YP_002925094.1| putative DNA methylase [Streptococcus phage 5093]
 gi|238558577|gb|ACR45907.1| putative DNA methylase [Streptococcus phage 5093]
          Length = 319

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RERL+II 
Sbjct: 147 LNSKDFGVPQNRERLFIIG 165


>gi|265751236|ref|ZP_06087299.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270294601|ref|ZP_06200803.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238132|gb|EEZ23582.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270276068|gb|EFA21928.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 466

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG-----IKPRLGDILE 44
           + A D+ +PQ R R++++ FL   +  F FP P G     ++  +GDI+E
Sbjct: 143 LNAADYYIPQDRYRVFVVGFLKELNCTFNFPKPFGKPYVTLRKAIGDIME 192


>gi|269976808|ref|ZP_06183783.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris 28-1]
 gi|269935005|gb|EEZ91564.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris 28-1]
          Length = 404

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLG 40
           + A D+GVPQRR R++++ F +     + FP P      L 
Sbjct: 182 VDAADYGVPQRRHRVFMVGFRSDVDAGWSFPAPTHSASALR 222


>gi|220903553|ref|YP_002478865.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867852|gb|ACL48187.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 308

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGI 35
           + A D+GVPQ R+R++I        V F +P     
Sbjct: 142 LNAADYGVPQTRQRVFIAGVRKDLDVIFTYPDATHS 177


>gi|260642764|ref|ZP_05417219.2| modification methylase NgoMIV [Bacteroides finegoldii DSM 17565]
 gi|260620609|gb|EEX43480.1| modification methylase NgoMIV [Bacteroides finegoldii DSM 17565]
          Length = 327

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKP 37
           + A D+GVPQ R R+ II       + F FP  +  K 
Sbjct: 144 LNASDYGVPQLRPRVIIIGIRRDLADVFMFPEKIPEKT 181


>gi|296393765|ref|YP_003658649.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180912|gb|ADG97818.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 393

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLG 40
           + A D+GVPQRR R++I+ F +     + FP+P      L 
Sbjct: 181 VDAADYGVPQRRHRVFIVGFRSDVRAGWAFPSPTHSGEALR 221


>gi|167759130|ref|ZP_02431257.1| hypothetical protein CLOSCI_01477 [Clostridium scindens ATCC 35704]
 gi|167663248|gb|EDS07378.1| hypothetical protein CLOSCI_01477 [Clostridium scindens ATCC 35704]
          Length = 324

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + A +FG+PQ RER++ I  LN   +F+F   +    R L + LE+ + D  
Sbjct: 164 LDAREFGLPQARERVFTISVLNGE-KFEFDDLIRTPMRNLQEFLEDDVPDIY 214


>gi|302873674|ref|YP_003842307.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686602|ref|ZP_07629048.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576531|gb|ADL50543.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 448

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPRLGDIL 43
           + + DFGVPQ RER++II  L      +  P     +  L  I+
Sbjct: 151 LNSKDFGVPQNRERVFIIASLRSRGRREILPIGGENRATLKQII 194


>gi|332162719|ref|YP_004299296.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666949|gb|ADZ43593.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859459|emb|CBX69803.1| hypothetical protein YEW_FM23370 [Yersinia enterocolitica W22703]
          Length = 365

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 9/45 (20%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
            + +FGVPQ RER++I+  L+ +  FK P          DIL ++
Sbjct: 213 NSANFGVPQTRERVFIVGTLHGNPLFKEPV---------DILHKN 248


>gi|206975132|ref|ZP_03236046.1| modification methylase HaeIII [Bacillus cereus H3081.97]
 gi|206746553|gb|EDZ57946.1| modification methylase HaeIII [Bacillus cereus H3081.97]
          Length = 352

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DFGVPQ R+R  II         +FP P   K  + D + +
Sbjct: 150 LNAADFGVPQNRKRAVIIG-KRGLAPAEFPKPKNEKNTIWDAISD 193


>gi|221232312|ref|YP_002511465.1| DNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|220674773|emb|CAR69346.1| putative DNA methylase [Streptococcus pneumoniae ATCC 700669]
          Length = 369

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + +FGVPQ RER++II  L      K FP
Sbjct: 131 LNSKNFGVPQNRERVFIIGHLRGGSGRKVFP 161


>gi|126740127|ref|ZP_01755817.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
 gi|126718946|gb|EBA15658.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
          Length = 319

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
           + A D+GVPQ R R+ I+      S +F +P PL   PR
Sbjct: 145 LNASDYGVPQLRPRVAIVALRKEFSGQFNWPEPLPHNPR 183


>gi|326779115|ref|ZP_08238380.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
 gi|326659448|gb|EGE44294.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
          Length = 433

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           ++A DFGVPQ R R  ++         ++F +PTP+G    + D LE+ ++ + 
Sbjct: 197 LEASDFGVPQLRPRAVLVAIRADVLGDIKFVWPTPVGGVYSVFDALEKSMEARY 250


>gi|42560766|ref|NP_975217.1| cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|42492262|emb|CAE76859.1| Cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|301320716|gb|ADK69359.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 341

 Score = 49.1 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+ V Q+RERL +I   N     ++F+FP     K  L DIL
Sbjct: 155 LNALDYMVAQKRERLIVIGIRNDLTNLIKFEFPKKHQKKLVLKDIL 200


>gi|322411818|gb|EFY02726.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + +F VPQ RER++II         F FP
Sbjct: 148 LNSKNFQVPQNRERIFIIGHSRRYRPRFLFP 178


>gi|300124212|gb|ADJ68008.1| M.BanII [Aneurinibacillus aneurinilyticus]
          Length = 385

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + +  +GVPQ+RER++ + FLN  ++
Sbjct: 149 LNSSHYGVPQKRERVFFVGFLNKVLD 174


>gi|209809294|ref|YP_002264832.1| putative C-5 cytosine-specific DNA methylase [Aliivibrio
           salmonicida LFI1238]
 gi|208010856|emb|CAQ81257.1| putative C-5 cytosine-specific DNA methylase [Aliivibrio
           salmonicida LFI1238]
          Length = 387

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKF-PTPLGIKPRLG---------DILEEHIDD 49
           + A DFGVPQ R+R++I            F P      P  G          + E  + +
Sbjct: 160 LNAKDFGVPQNRKRVFIHGVRKDIKSTVSFPPEATHFSPTSGLAPCWKTASTVFEP-VPE 218

Query: 50  KS 51
           K 
Sbjct: 219 KY 220


>gi|322385307|ref|ZP_08058952.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
 gi|321270566|gb|EFX53481.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
          Length = 480

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + +FGVPQ RER++II           FP
Sbjct: 176 LNSKNFGVPQNRERVFIIGHSRKRGTRLLFP 206


>gi|238793797|ref|ZP_04637418.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726861|gb|EEQ18394.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 365

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 9/45 (20%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
            + +FGVPQ RER++I+  L+ +  FK P          DIL ++
Sbjct: 213 NSANFGVPQTRERVFIVGTLHGNPLFKEPV---------DILHKN 248


>gi|169834211|ref|YP_001693507.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996713|gb|ACA37325.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 255

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER++II 
Sbjct: 147 LNSKDFGVPQNRERVFIIG 165


>gi|15088756|ref|NP_150145.1| putative DNA methylase [Streptococcus phage MM1]
 gi|15074902|emb|CAC48079.1| putative DNA methylase [Streptococcus phage MM1]
 gi|73747029|gb|AAZ82425.1| C5 methyltransferase alpha subunit [Streptococcus phage MM1 1998]
          Length = 385

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + +FGVPQ RER++II  L      K FP
Sbjct: 147 LNSKNFGVPQNRERVFIIGHLRGGSGRKVFP 177


>gi|212710423|ref|ZP_03318551.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens DSM
           30120]
 gi|212686843|gb|EEB46371.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens DSM
           30120]
          Length = 330

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPR--LGDILEE 45
           + A D+GV Q R+R+  + F  + ++ + FP P+    R  L DI+++
Sbjct: 145 LNAVDYGVAQDRKRVIFVGFRSDLNIPYTFPEPIEKDKRKVLKDIIKD 192


>gi|319745928|gb|EFV98213.1| type II DNA modification methyltransferase [Streptococcus
           agalactiae ATCC 13813]
          Length = 454

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP 30
           + + +F VPQ RER++II         F FP
Sbjct: 151 LNSKNFQVPQNRERIFIIGHSRRYRPRFLFP 181


>gi|296491874|ref|YP_003662339.1| putative DNA (cytosine-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
 gi|289176759|emb|CBJ92924.1| putative DNA (cytosine-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 575

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHIDDKSTISNKL 57
           +   +FGV +RR+RL ++   +    F+      ++    R+ +ILE    D    S + 
Sbjct: 315 LDGNEFGVIERRKRLCVVALSHGIDGFELEKVQPVRTKESRIHEILEPVPLD----SER- 369

Query: 58  WE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           W+       ++  +K AGKGF   L   +     T+   Y K
Sbjct: 370 WKSFDYLADKELRDKAAGKGFSRQLLTGDDEYCGTIGKDYAK 411


>gi|12229868|sp|Q9RLM4|MTD1_NEIMC RecName: Full=Probable modification methylase NmeDIP;
           Short=M.NmeDIP; AltName: Full=Cytosine-specific
           methyltransferase NmeDIP
 gi|6179652|emb|CAB59897.1| putative m5C methylase [Neisseria meningitidis]
          Length = 420

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEH 46
           + A ++GVPQ RER+ ++ FL+  V+    F +   +       D LE+ 
Sbjct: 220 INAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHI----SFPDALEKD 265


>gi|225075681|ref|ZP_03718880.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
 gi|224952952|gb|EEG34161.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
          Length = 389

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 239 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 295

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 296 NHIWS----RAEKSPDQG 309


>gi|331703222|ref|YP_004399909.1| cytosine specific DNA methyltransferase Sau96I [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|328801777|emb|CBW53930.1| Cytosine specific DNA methyltransferase Sau96I [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 342

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+ V Q+RERL +I   N     ++F+FP     K  L DIL
Sbjct: 155 LNALDYMVAQKRERLIVIGIRNDLTNLIKFEFPKKHQKKLVLKDIL 200


>gi|313665138|ref|YP_004047009.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
 gi|312949950|gb|ADR24546.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
          Length = 342

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           + A D+ V Q+RERL +I   N     ++F+FP     K  L DIL
Sbjct: 155 LNALDYMVAQKRERLIVIGIRNDLTNLIKFEFPKKHQKKLVLKDIL 200


>gi|261392162|emb|CAX49670.1| putative modification methylase (cytosine-specific
           methyltransferase) [Neisseria meningitidis 8013]
 gi|309378365|emb|CBX23011.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 389

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 239 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 295

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 296 NHIWS----RAEKSPDQG 309


>gi|317506927|ref|ZP_07964699.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254855|gb|EFV14153.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 399

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLG 40
           + A D+GVPQRR R++I+ F +     + FP P      L 
Sbjct: 181 VDAADYGVPQRRHRVFIVGFRSDVRAGWAFPAPTHSGEALR 221


>gi|158335733|ref|YP_001516905.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305974|gb|ABW27591.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
          Length = 397

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGI 35
           + A ++GVPQRRER++I+      ++E+ FP     
Sbjct: 174 VDAANYGVPQRRERVFIVGIREDLNIEWSFPEESHS 209


>gi|94968156|ref|YP_590204.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550206|gb|ABF40130.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 359

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           M AC+FGVPQ R R+  +      S  F +P        +GD+L +       +S + W+
Sbjct: 184 MNACEFGVPQLRPRVVFVAMRKEYSEHFAWPRATNEPQTVGDVLFD------LMSARGWK 237

Query: 60  GHQKRKEN 67
           G +  +  
Sbjct: 238 GVKAWRAK 245


>gi|312874669|ref|ZP_07734692.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
 gi|311089796|gb|EFQ48217.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
          Length = 331

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R+R++ + F    ++ F  P     KP    ++    D    + +    
Sbjct: 142 LNASDYGVPQDRKRVFYVGFRKDLNINFDIP----PKPYDYKLIFR--DAIYDLKDNAIP 195

Query: 60  GHQKRKENNKIAG 72
                 E NK  G
Sbjct: 196 AL----EKNKTNG 204


>gi|308182632|ref|YP_003926759.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
 gi|308064817|gb|ADO06709.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
           pylori PeCan4]
          Length = 351

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ RER+ ++  L     +F F  P+     L D L
Sbjct: 145 LNALDYGVPQIRERVILVGALKSFKQKFHFHKPIKTHFSLKDAL 188


>gi|325294602|ref|YP_004281116.1| DNA-cytosine methyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065050|gb|ADY73057.1| DNA-cytosine methyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 342

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGD 41
           +   D+ VPQ R+R++II F     + + FP P   K  L D
Sbjct: 143 IDTYDYLVPQNRKRVFIIGFRKDLQISYSFPKPFDRKKTLRD 184


>gi|294673126|ref|YP_003573742.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
           23]
 gi|294473536|gb|ADE82925.1| DNA methylase, C-5 cytosine-specific family [Prevotella ruminicola
           23]
          Length = 342

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
           + A ++GVPQ R+R   +       +F FP     +  LGD   + 
Sbjct: 155 VNAANYGVPQIRQRFICVGVRKDMPDFIFPEETHSE--LGDETHKK 198


>gi|227431785|ref|ZP_03913812.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352468|gb|EEJ42667.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 448

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
            + DFGVPQ RER+YII  L    E + FP
Sbjct: 150 NSKDFGVPQNRERVYIIGHLRGDSEREVFP 179


>gi|331090242|ref|ZP_08339130.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402188|gb|EGG81760.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 464

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER++II 
Sbjct: 151 LNSKDFGVPQNRERVFIIA 169


>gi|254805366|ref|YP_003083587.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|254668908|emb|CBA07091.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|308389730|gb|ADO32050.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
          Length = 389

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 239 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 295

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 296 NHIWS----RAEKSPDQG 309


>gi|254456253|ref|ZP_05069682.1| Cytosine-specific methyltransferase HphIA [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083255|gb|EDZ60681.1| Cytosine-specific methyltransferase HphIA [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 342

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + + D+GVPQ R R++I+      + +F+FP P
Sbjct: 144 LNSADYGVPQIRHRVFIVGIKKELNKKFEFPKP 176


>gi|121635255|ref|YP_975500.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313668027|ref|YP_004048311.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica ST-640]
 gi|120866961|emb|CAM10721.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313005489|emb|CBN86924.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica 020-06]
          Length = 383

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 233 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 289

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 290 NHIWS----RAEKSPDQG 303


>gi|312863775|ref|ZP_07724013.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
           F0396]
 gi|311101311|gb|EFQ59516.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
           F0396]
          Length = 454

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL 43
           + + DF VPQ RER++II         F FP      P   + L
Sbjct: 151 LNSKDFQVPQNRERVFIIGHSRRYRPRFLFPIRGENSPVNLERL 194


>gi|121634523|ref|YP_974768.1| putative modification methylase NmeDI [Neisseria meningitidis
           FAM18]
 gi|120866229|emb|CAM09969.1| putative modification methylase NmeDI [Neisseria meningitidis
           FAM18]
          Length = 383

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEH 46
           + A ++GVPQ RER+ ++ FL+  V+    F +   +       D LE+ 
Sbjct: 183 INAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHI----SFPDALEKD 228


>gi|319939117|ref|ZP_08013481.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
 gi|319812167|gb|EFW08433.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
          Length = 434

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + A D+GVPQ RER++++      +E K+
Sbjct: 231 VNARDYGVPQSRERVFLVGVHKEKIEKKY 259


>gi|300791025|ref|YP_003771316.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299800539|gb|ADJ50914.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 435

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           + ACDFGVPQ R R  ++       + FK+P P+  +  +   + +
Sbjct: 163 LNACDFGVPQLRPRFVLVAMQEDDAKYFKWPEPVAKQLTVSAAIHD 208


>gi|315506801|ref|YP_004085688.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
 gi|315413420|gb|ADU11537.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
          Length = 412

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           ++A D+GVPQ R R  ++         F +P P G  P +GD L E       ++ + W 
Sbjct: 148 LQASDYGVPQLRPRFILVALKTEDAPYFHWPEPQGAPPTVGDTLVE------LMAERGWR 201

Query: 60  GHQKRKEN 67
           G Q   E 
Sbjct: 202 GAQAWAER 209


>gi|307153788|ref|YP_003889172.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984016|gb|ADN15897.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 424

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  +GVPQ RERL+++      V  ++P P+       ++       K   +  +WE 
Sbjct: 160 LNAAHYGVPQNRERLFLLGSQKGLVLPQYPEPITAPNPFQNL------SK---TPTVWEA 210

Query: 61  HQK 63
            Q 
Sbjct: 211 LQD 213


>gi|325141979|gb|EGC64416.1| cytosine-specific methyltransferase MthTI [Neisseria meningitidis
           961-5945]
          Length = 364

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEH 46
           + A ++GVPQ RER+ ++ FL+  V+    F +   +       D LE+ 
Sbjct: 164 INAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHI----SFPDALEKD 209


>gi|319746106|gb|EFV98380.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           agalactiae ATCC 13813]
          Length = 458

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFP 30
           + + DF VPQ RER++II         F FP
Sbjct: 151 LNSKDFQVPQNRERIFIIGHSRRYCSRFLFP 181


>gi|331086924|ref|ZP_08336001.1| hypothetical protein HMPREF0987_02304 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410090|gb|EGG89525.1| hypothetical protein HMPREF0987_02304 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQRR R+  I +       ++P P         +L+ 
Sbjct: 181 LNAADYGVPQRRNRIIFIGYRRGLTPPQYPEPTVKPNEQLSLLDA 225


>gi|260866454|ref|YP_003232856.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257762810|dbj|BAI34305.1| predicted DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 356

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
            A D+GVPQ R R+ ++      S  F++P+   I P +GD L +
Sbjct: 154 NASDYGVPQLRPRVLLVALRGKYSAHFRWPSETLIPPTVGDALFD 198


>gi|241758593|ref|ZP_04756708.1| site-specific DNA-methyltransferase [Neisseria flavescens SK114]
 gi|241321245|gb|EER57417.1| site-specific DNA-methyltransferase [Neisseria flavescens SK114]
          Length = 364

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLG 40
           + A ++GVPQ RER+ ++ FLN  V+    F +   +     LG
Sbjct: 164 INAIEYGVPQDRERIILVGFLNQHVDTLQKFDWDAHILFPDALG 207


>gi|325131820|gb|EGC54520.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325137870|gb|EGC60445.1| cytosine-specific methyltransferase MthTI [Neisseria meningitidis
           ES14902]
 gi|325197946|gb|ADY93402.1| cytosine-specific methyltransferase MthTI [Neisseria meningitidis
           G2136]
          Length = 376

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPRLGDILEEH 46
           + A ++GVPQ RER+ ++ FL+  V+    F +   +       D LE+ 
Sbjct: 176 INAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHI----SFPDALEKD 221


>gi|254475144|ref|ZP_05088530.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
 gi|214029387|gb|EEB70222.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
          Length = 324

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-LGIKPRLGDIL 43
           + A D+GVPQ R R+ I+      S +F +P P     P +G+ L
Sbjct: 145 LNASDYGVPQLRPRVAIVALRKEFSGQFAWPDPLPHNPPTVGETL 189


>gi|110643908|ref|YP_671638.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
           536]
 gi|110345500|gb|ABG71737.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
           536]
          Length = 315

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 32/106 (30%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR----------------LGDILE 44
              D+GVPQ R R+ I+   +   VE+ +P P    P+                L DI E
Sbjct: 144 NVADYGVPQMRYRVIIVGVRDDIKVEYIYPQPTHSSPKKSDKTGLAPWISIGDALHDIPE 203

Query: 45  E--------HIDDKSTISNKLWEGHQKRKENNK------IAGKGFG 76
                    H+     I+N+ + GH +  + NK        G G G
Sbjct: 204 PDSENDLLNHVYSTYKITNRNFTGH-RETDPNKPSPTILARGNGKG 248


>gi|121582558|ref|YP_974087.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120608614|gb|ABM44352.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 318

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDILEE 45
            A D+GV Q R R+  +         F +P P     P +G++L +
Sbjct: 146 NASDYGVSQLRPRVVFVGIRKDLASGFSWPEPLPNNPPTVGELLHD 191


>gi|317182001|dbj|BAJ59785.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
           pylori F57]
          Length = 434

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + A DFGV Q RERLYI+  L+  ++   FP
Sbjct: 175 LNAKDFGVAQNRERLYIVGNLSCPIDLDHFP 205


>gi|209527672|ref|ZP_03276170.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491900|gb|EDZ92257.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 429

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 19/70 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG-----------------IKP--RLGD 41
           + + ++GVPQ R R Y++  LN +  F   + LG                  KP  ++ D
Sbjct: 148 LNSSNYGVPQNRVRAYMMGVLNQTPHFNLVSDLGAKDSHSYESGQLSLFSAPKPSCKVRD 207

Query: 42  ILEEHIDDKS 51
           ILE++     
Sbjct: 208 ILEDNPPHHY 217


>gi|260913722|ref|ZP_05920198.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
 gi|260632261|gb|EEX50436.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
          Length = 329

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I F    S+ F+FP    I   + D      +DK T+ + +W+
Sbjct: 144 VNAKDYGVAQERKRVFYIGFRKDLSISFQFP----IGSTVND------EDKITLKDIIWD 193


>gi|291569071|dbj|BAI91343.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 429

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 19/70 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-------------------RLGD 41
           + + ++GVPQ R R Y++  LN +  F   + LG K                    ++ D
Sbjct: 148 LNSSNYGVPQNRVRAYMMGVLNQTPHFNLLSDLGAKDSHSYQSGQLSLFSAYQTPCKVRD 207

Query: 42  ILEEHIDDKS 51
           ILE++     
Sbjct: 208 ILEDNPPQHY 217


>gi|284050345|ref|ZP_06380555.1| DNA (cytosine-5-)-methyltransferase [Arthrospira platensis str.
           Paraca]
          Length = 429

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 19/70 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-------------------RLGD 41
           + + ++GVPQ R R Y++  LN +  F   + LG K                    ++ D
Sbjct: 148 LNSSNYGVPQNRVRAYMMGVLNQTPHFNLLSDLGAKDSHSYQSGQLSLFSAYQTPCKVRD 207

Query: 42  ILEEHIDDKS 51
           ILE++     
Sbjct: 208 ILEDNPPQHY 217


>gi|163738696|ref|ZP_02146110.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741592|ref|ZP_02148983.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis 2.10]
 gi|161385326|gb|EDQ09704.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis 2.10]
 gi|161388024|gb|EDQ12379.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 324

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
           + A D+GVPQ R R+ I+      S +F +P PL   PR
Sbjct: 145 LNASDYGVPQLRPRVAIVALRKEFSGQFNWPDPLPHNPR 183


>gi|24527985|emb|CAD33712.1| putative DNA methylase [Escherichia coli]
          Length = 314

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 32/106 (30%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR----------------LGDILE 44
              D+GVPQ R R+ I+   +   VE+ +P P    P+                L DI E
Sbjct: 143 NVADYGVPQMRYRVIIVGVRDDIKVEYIYPQPTHSSPKKSDKTGLAPWISIGDALHDIPE 202

Query: 45  E--------HIDDKSTISNKLWEGHQKRKENNK------IAGKGFG 76
                    H+     I+N+ + GH +  + NK        G G G
Sbjct: 203 PDSENDLLNHVYSTYKITNRNFTGH-RETDPNKPSPTILARGNGKG 247


>gi|323178455|gb|EFZ64033.1| modification methylase NgoMIV [Escherichia coli 1180]
          Length = 377

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
            A D+GVPQ R R+ ++      S  F++P+   I P +GD L +
Sbjct: 154 NASDYGVPQLRPRVLLVALRGKYSAHFRWPSETLIPPTVGDALFD 198


>gi|325132717|gb|EGC55400.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325136737|gb|EGC59337.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325138603|gb|EGC61162.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142796|gb|EGC65168.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198710|gb|ADY94166.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325201728|gb|ADY97182.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325204572|gb|ADZ00026.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
 gi|325208528|gb|ADZ03980.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 316

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 166 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 222

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 223 NHIWS----RAEKSPDQG 236


>gi|25011412|ref|NP_735807.1| hypothetical protein gbs1370 [Streptococcus agalactiae NEM316]
 gi|24412950|emb|CAD47029.1| unknown [Streptococcus agalactiae NEM316]
          Length = 450

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL 43
           + + DF VPQ RER+++I         F FP      P   + L
Sbjct: 148 LNSKDFQVPQNRERVFLIGHSRRYRPRFLFPLRREGSPTDIERL 191


>gi|294155584|ref|YP_003559968.1| CpG cytosine-specific DNA modification methyltransferase
          [Mycoplasma crocodyli MP145]
 gi|291600126|gb|ADE19622.1| CpG cytosine-specific DNA modification methyltransferase
          [Mycoplasma crocodyli MP145]
          Length = 176

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
          M + D+   Q RER++ + FL  +  F+FP        + +++++ I+D
Sbjct: 1  MNSKDYNSAQNRERVFAVSFLGEN-NFEFPKINSKPKTIKEVIKQSIND 48


>gi|326574028|gb|EGE23977.1| DcmB [Moraxella catarrhalis CO72]
          Length = 337

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GV Q R+R++ I F    ++ F FP        +G   E+  D+K T+ + +W+
Sbjct: 144 VNAKNYGVAQERKRVFYIGFRKDLAINFNFP--------IGSTAED--DNKITLKDVIWD 193


>gi|325130663|gb|EGC53404.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325134723|gb|EGC57362.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325144843|gb|EGC67131.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325205668|gb|ADZ01121.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 316

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP------LGIKPRLGDILEEHIDDKSTIS 54
           + A D+GVPQ RER+ I+  L    E +          +  +  +GD++++  D+   I+
Sbjct: 166 LNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDE---IA 222

Query: 55  NKLWEGHQKRKENNKIAG 72
           N +W     R E +   G
Sbjct: 223 NHIWS----RAEKSPDQG 236


>gi|303236368|ref|ZP_07322958.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483426|gb|EFL46431.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 357

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-------------PRLGDILEEHIDD 49
           A D+GVPQ R+RL  +   N   +F+FP PL  +             P L D L   +  
Sbjct: 157 AADYGVPQIRKRLVFVGLKNNKEKFEFPEPLLKEEAYITCKQAISDLPPLVDELGSEVST 216


>gi|118601986|ref|YP_908686.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|118614724|ref|YP_908507.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|134044487|ref|YP_001101821.1| C-5 cytosine-specific DNA methylase [Yersinia ruckeri]
 gi|134044859|ref|YP_001102203.1| C-5 cytosine-specific DNA methylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|134047248|ref|YP_001101999.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|165937989|ref|ZP_02226549.1| cytosine-specific DNA methylase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229516190|ref|ZP_04405639.1| site-specific DNA methylase [Vibrio cholerae RC9]
 gi|237640283|ref|YP_002891138.1| Dcm [Escherichia coli]
 gi|237810027|ref|YP_002894466.1| Dcm [Escherichia coli]
 gi|237810223|ref|YP_002894662.1| Dcm [Salmonella enterica]
 gi|118596815|dbj|BAF38119.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|118596995|dbj|BAF38298.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|133904850|gb|ABO40867.1| C-5 cytosine-specific DNA methylase [Yersinia ruckeri]
 gi|133905167|gb|ABO41182.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|133905393|gb|ABO42155.1| C-5 cytosine-specific DNA methylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165914012|gb|EDR32629.1| cytosine-specific DNA methylase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229346840|gb|EEO11809.1| site-specific DNA methylase [Vibrio cholerae RC9]
 gi|229561502|gb|ACQ77705.1| Dcm [Escherichia coli]
 gi|229561707|gb|ACQ77909.1| Dcm [Salmonella enterica]
 gi|229561882|gb|ACQ78083.1| Dcm [Escherichia coli]
 gi|324008172|gb|EGB77391.1| C-5 cytosine-specific DNA methylase [Escherichia coli MS 57-2]
 gi|327536569|gb|AEA95402.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Dublin]
 gi|332144438|dbj|BAK19658.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 541

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHIDDKSTISNKL 57
           +   +FGV +RR+RL ++   +    F+      ++    R+ DILE    D    S + 
Sbjct: 281 LDGNEFGVIERRKRLCVVALSHGIDGFELEKVQPVRTKESRIQDILEPVPLD----SER- 335

Query: 58  WE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           W+      +++  +K AGKGF   L   +     T+   Y K
Sbjct: 336 WKSFDYLAEKELRDKAAGKGFSRQLLTGDDEFCGTIGKDYAK 377


>gi|290891561|ref|ZP_06554618.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
 gi|290478814|gb|EFD87481.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
          Length = 382

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 149 LNSKNFGVPQNRERVFIIG 167


>gi|262200549|ref|YP_003271757.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262083896|gb|ACY19864.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
          Length = 399

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLG 40
           + A D+GVPQ+R R++ + F +    E+ FP+P      L 
Sbjct: 178 VNAADYGVPQQRWRVFFVGFRSDVDAEWSFPSPTHSAAALR 218


>gi|315029938|gb|EFT41870.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
          Length = 317

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 1   MKACDFGVPQRRERLY-IIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A DFG+PQ+R+R++ I         F       +KP LG+ LE   D K  ++     
Sbjct: 149 LNAMDFGIPQKRKRVFAISKLDGEPFNFDLLKHRPLKP-LGNFLEVTTDQKYLVTQP--S 205

Query: 60  GHQKRKENNKIAGKGFGYGLFFENSATTNTLSAR 93
              K +  + +A  GF   L   N     T++ R
Sbjct: 206 MLSKIRSKSSLA-NGFSGRLEVVNDFVY-TITTR 237


>gi|281181375|dbj|BAI57705.1| cytosine specific DNA methyltransferase [Escherichia coli SE15]
 gi|315288374|gb|EFU47772.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 398

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ R+R++I    N 
Sbjct: 159 LNARDYGVPQNRKRVFIAGVRND 181


>gi|152994008|ref|YP_001359729.1| cytosine-specific methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425869|dbj|BAF73372.1| cytosine-specific methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 362

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPT-PLGIKPRLGDILEEHIDDK 50
           + A DFGVPQ R R +II        ++F F +     K  +G+ L++    K
Sbjct: 150 LNAADFGVPQYRNRFFIIGHRKEKGGIKFDFDSLEKKPKVTVGEALKDLPSLK 202


>gi|15894780|ref|NP_348129.1| DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|15024448|gb|AAK79469.1|AE007660_12 DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|325508918|gb|ADZ20554.1| DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum EA 2018]
          Length = 415

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSVEFKF 29
           +   DF  +PQ RER+YI+ FLN     KF
Sbjct: 204 LNTMDFSHLPQNRERIYIVGFLNKKDAEKF 233


>gi|317480905|ref|ZP_07939986.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902990|gb|EFV24863.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
          Length = 441

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 5   DFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR-LGDILEEHIDDKSTISN 55
            FG+PQ R R+YI+  L       +F+FP  +      + DIL     D  ++  
Sbjct: 149 YFGIPQHRTRIYIVGRLKSKGGLKDFRFPEHIERPECNINDILVPDDTDYMSLRP 203


>gi|462647|sp|P34905|MTB1_BREBE RecName: Full=Modification methylase BbvI; Short=M.BbvI; AltName:
           Full=Cytosine-specific methyltransferase BbvI
          Length = 374

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 17/70 (24%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKP------RLGDILEEHIDDKSTISNKL 57
           ++GVPQRR R+ I+       V F+ P P   +        L DI E+ ++ + T     
Sbjct: 170 EYGVPQRRHRIIIVGIRKDQDVAFRVPEPTHKEKYRTASEALADIPEDALNHEFT----- 224

Query: 58  WEGHQKRKEN 67
                + K+ 
Sbjct: 225 -----RHKKK 229


>gi|228969065|ref|ZP_04129983.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790631|gb|EEM38314.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 326

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 150 LNSKNFGVPQNRERVFIIG 168


>gi|288904476|ref|YP_003429697.1| DNA methylase [Streptococcus gallolyticus UCN34]
 gi|288731201|emb|CBI12749.1| Putative DNA methylase [Streptococcus gallolyticus UCN34]
          Length = 366

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER+++I 
Sbjct: 147 LNSKDFGVPQNRERVFLIG 165


>gi|237703954|ref|ZP_04534435.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226901866|gb|EEH88125.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 367

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ R+R++I    N 
Sbjct: 128 LNARDYGVPQNRKRVFIAGVRND 150


>gi|330723584|gb|AEC45954.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 397

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + + DFG  Q RER++++  LN    FK+P  +     L  ILE +   
Sbjct: 217 LNSTDFGSSQNRERVFMVSKLNNKP-FKWPLKIKHNNDLSRILESNFQP 264


>gi|1709158|sp|P50192|MTHA_HAEPH RecName: Full=Modification methylase HphIA; Short=M.HphIA; AltName:
           Full=Cytosine-specific methyltransferase HphIA; AltName:
           Full=M.Hphi(C)
 gi|732729|emb|CAA59690.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Haemophilus parahaemolyticus]
          Length = 372

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-RLGD 41
           + A DFGVPQ R R+  I       E  FP P   +   +GD
Sbjct: 195 LNAADFGVPQLRSRIVFIG-RKDGGEITFPEPSHTEYNTVGD 235


>gi|169823586|ref|YP_001691089.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832206|dbj|BAG09121.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 330

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFK-FPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GV Q R+R++ + F    ++ F   P     KP L D +         + +   
Sbjct: 142 LNASDYGVAQDRKRIFYVGFRKDLNICFDNPPKKFNYKPTLKDAI-------YDLKDTAI 194

Query: 59  EGHQKRKENNKIAGKG 74
                    N+    G
Sbjct: 195 PSL------NRNKTNG 204


>gi|328947038|ref|YP_004364375.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447362|gb|AEB13078.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 466

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 5   DFGVPQRRERLYIIDFLNPSV---EFKFPTPLGI-KPRLGDILEEHIDD 49
           +FG+PQ R+R+YI+  L       +FKFP      +  +  +++E  DD
Sbjct: 173 NFGIPQHRKRIYIVGRLKSKGGLKDFKFPPHEEKVECNIKSVIDESDDD 221


>gi|67925212|ref|ZP_00518579.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67852948|gb|EAM48340.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 417

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF--PTPLG 34
           + A  FGVPQ+R+R++I+      V  +F  P P  
Sbjct: 225 LSAASFGVPQKRDRIFIVGLKKDQVSKQFIIPKPTH 260


>gi|210617281|ref|ZP_03291507.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
 gi|210149385|gb|EEA80394.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
          Length = 455

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGDI 42
           + + DFGVPQ R+R+YI+ +L+        P P      L  I
Sbjct: 176 LNSKDFGVPQARKRVYIVGYLDFRCAGKILPEPETNGAALVQI 218


>gi|304372838|ref|YP_003856047.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309029|gb|ADM21509.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 397

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + + DFG  Q RER++++  LN    FK+P  +     L  ILE +   
Sbjct: 217 LNSTDFGSSQNRERVFMVSKLNNKP-FKWPLKIKHNNDLSRILESNFQP 264


>gi|291539766|emb|CBL12877.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 366

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A D+G+PQ R+R++ +   +   +F+FP P+
Sbjct: 155 LYAPDYGIPQMRKRVFFVGLRDGKTKFEFPEPV 187


>gi|311977248|gb|ADQ20503.1| M.BbvI [Brevibacillus brevis]
          Length = 367

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 17/70 (24%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKP------RLGDILEEHIDDKSTISNKL 57
           ++GVPQRR R+ I+       V F+ P P   +        L DI E+ ++ + T     
Sbjct: 170 EYGVPQRRHRIIIVGIRKDQDVAFRVPEPTHKEKYRTASEALADIPEDALNHEFT----- 224

Query: 58  WEGHQKRKEN 67
                + K+ 
Sbjct: 225 -----RHKKK 229


>gi|153852755|ref|ZP_01994192.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
 gi|149754397|gb|EDM64328.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
          Length = 367

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRL 39
           + + DFGVPQ R+R+YI+ +L+        P P      L
Sbjct: 84  LNSKDFGVPQSRKRVYIVGYLDGRCAGKILPFPKANGTAL 123


>gi|317054725|ref|YP_004103193.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
 gi|294869157|gb|ADF47149.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
          Length = 363

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           + A D+GVPQ R R ++I   +   ++ FP P      + D+ 
Sbjct: 149 LNAADYGVPQARPRFFLIGTRDGE-KYNFPDPSHAPTSVNDLF 190


>gi|213024445|ref|ZP_03338892.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 137

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   VPQRRERLYIIDFL---NPSVEFKFPTP----LGIKPRLGDIL 43
           +PQ RER+ ++ F    N   +F            +P L ++L
Sbjct: 94  LPQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELL 136


>gi|293363234|ref|ZP_06610118.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris A21JP2]
 gi|292553093|gb|EFF41842.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris A21JP2]
          Length = 428

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKLWE 59
           + + DFG+ Q R+R+YII   + +V       +  +  + DI E++++  KS  S +L  
Sbjct: 160 LNSADFGLAQNRKRVYIIGTKDKTVHLN--NFVKKQSNVKDIQEDNLETIKSIFSKQL-- 215

Query: 60  GHQKRKEN 67
             +K K  
Sbjct: 216 -LKKYKTK 222


>gi|242348041|ref|YP_002995602.1| C-5 cytosine-specific DNA methylase [Aeromonas hydrophila]
 gi|224831860|gb|ACN66991.1| C-5 cytosine-specific DNA methylase [Aeromonas hydrophila]
          Length = 541

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHIDDKSTISNKL 57
           +   +FGV +RR+RL ++   +    F+      ++    R+ DILE    D    S + 
Sbjct: 281 LDGNEFGVIERRKRLCVVALSHGIDGFELEKVQPVRTKESRIQDILESVPLD----SER- 335

Query: 58  WE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           W+      +++  +K AGKGF   L   +     T+   Y K
Sbjct: 336 WKSFDYLAEKELRDKAAGKGFSRQLLTGDDEFCGTIGKDYAK 377


>gi|224436796|ref|ZP_03657794.1| modification methylase HaeIII [Helicobacter cinaedi CCUG 18818]
 gi|313143285|ref|ZP_07805478.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313128316|gb|EFR45933.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 305

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPR 38
           + A D+GV Q R+R+ II    +   E  FP PL  KP+
Sbjct: 148 LNASDYGVAQNRKRVIIIGRRVDIKQEIDFPKPLHKKPK 186


>gi|20530828|gb|AAM27270.1|AF507962_1 methyl transferase [Lactococcus lactis]
          Length = 185

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 149 LNSKNFGVPQNRERVFIIG 167


>gi|30089875|ref|NP_839905.1| putative methylase [Lactococcus phage P335 sensu lato]
 gi|21954664|gb|AAM83053.1|AF489521_14 putative methylase [Lactococcus phage 4268]
          Length = 185

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 149 LNSKNFGVPQNRERVFIIG 167


>gi|163755904|ref|ZP_02163021.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
 gi|161324075|gb|EDP95407.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
          Length = 413

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           +KA ++ VPQ+RERL ++       +++ +P P      L D L++
Sbjct: 219 LKAINYKVPQKRERLILVGIRKDIDIKYDYPKPHNKIYNLSDALKK 264


>gi|153815491|ref|ZP_01968159.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC 27756]
 gi|145847133|gb|EDK24051.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC 27756]
          Length = 439

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDI 42
           + + DFGVPQ R+R+Y++ +L+        P P      L  I
Sbjct: 160 LNSKDFGVPQSRKRVYLVGYLDRRCAGKILPFPAANGTSLIQI 202


>gi|323955563|gb|EGB51327.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H263]
          Length = 126

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ R+R++I    N 
Sbjct: 81  LNARDYGVPQNRKRVFIAGVRND 103


>gi|262402827|ref|ZP_06079388.1| type II restriction-modification system methylation subunit [Vibrio
           sp. RC586]
 gi|262351609|gb|EEZ00742.1| type II restriction-modification system methylation subunit [Vibrio
           sp. RC586]
          Length = 341

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-LGIKPRLGDILEEHIDD 49
           +KA DF VPQ R R+ I+   +  +  + FP P +     +  ++E  I D
Sbjct: 155 LKASDFEVPQNRHRVIIVGVRHDVNNNYTFPEPIISSDLTVKSVIENSILD 205


>gi|145218883|ref|YP_001129592.1| DNA-cytosine methyltransferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145205047|gb|ABP36090.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM 265]
          Length = 377

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           ++A D+G+PQRR+R  I+ +         P+P  
Sbjct: 152 LEASDYGLPQRRQRTIIVGWKKHLPAVSLPSPTH 185


>gi|331085742|ref|ZP_08334825.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406665|gb|EGG86170.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 425

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + D+GVPQ RER++II 
Sbjct: 151 LNSKDYGVPQNRERVFIIA 169


>gi|160894995|ref|ZP_02075769.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
 gi|156863426|gb|EDO56857.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
          Length = 447

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRL 39
           + + DFGVPQ R+R+YI+ +L+        P P      L
Sbjct: 164 LNSKDFGVPQSRKRVYIVGYLDGRCAGKILPFPKANGTAL 203


>gi|254412384|ref|ZP_05026158.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180694|gb|EDX75684.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 221

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + + D+GV Q RER++I+        F+FP P   K
Sbjct: 161 LNSADYGVAQLRERVFIVA-TRIKPSFRFPLPTHSK 195


>gi|153872654|ref|ZP_02001483.1| DNA methylase [Beggiatoa sp. PS]
 gi|152070879|gb|EDN68516.1| DNA methylase [Beggiatoa sp. PS]
          Length = 259

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1  MKACDFGVPQRRERLYIID 19
          + A  FG+PQ RER+ II 
Sbjct: 26 LNAKHFGLPQNRERIIIIG 44


>gi|328948822|ref|YP_004366159.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328449146|gb|AEB14862.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 437

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHID---DKS--- 51
           + A +FGVPQ R+R+YI           FP     +     L DILE+ +     K    
Sbjct: 161 LNAKNFGVPQDRKRIYITG-----TYTDFPNLENFETNNANLSDILEKGLPVSNSKFVNL 215

Query: 52  TISNKLWEGHQKRKENNKIAGKG 74
            +SN   +        +K  G  
Sbjct: 216 VLSNYSVKQLYGMSIKDKRGGNN 238


>gi|71274663|ref|ZP_00650951.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71899625|ref|ZP_00681779.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
 gi|71164395|gb|EAO14109.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71730577|gb|EAO32654.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
          Length = 329

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE-FKFPTPL-GIKPRLGDILEE 45
            A D+GV Q R R+  +         F +P PL    P +G++L +
Sbjct: 157 NASDYGVSQLRPRVVFVGIRKDLASGFAWPEPLQNAPPTVGELLHD 202


>gi|154502686|ref|ZP_02039746.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
 gi|153796569|gb|EDN78989.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
          Length = 458

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRL 39
           + + DFGVPQ R+R+Y++ +L+        P P      L
Sbjct: 179 LNSKDFGVPQSRKRVYLVGYLDRRCAGKILPFPTANGTPL 218


>gi|265751237|ref|ZP_06087300.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270294602|ref|ZP_06200804.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238133|gb|EEZ23583.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270276069|gb|EFA21929.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 335

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 21/79 (26%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+ VP+ R+R++ I F       +F++PTPL  KP              T+   +W
Sbjct: 144 LNANDYDVPEDRDRVFYIGFRKDLDIHDFEYPTPLKHKP--------------TLRESIW 189

Query: 59  EGHQKRK----ENNKIAGK 73
           +  Q       E NK  G 
Sbjct: 190 D-LQDSAIPALEKNKTNGN 207


>gi|255073161|ref|XP_002500255.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226515517|gb|ACO61513.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 599

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 8   VPQRRERLYIIDFL------NPSVEFKFP-TPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           VPQ R+R++ + F            F +P  P      + D+LE+    + T   ++ E 
Sbjct: 424 VPQSRKRVFFVGFRSDLRAAREDGVFTWPEEPRDCGGTVKDVLEDE--HRETARCEVSEY 481

Query: 61  HQKRKE----NNKIAGKGFG---YGLFFENSATTNTLSARYYK 96
             +R        +  G+  G    G  +       TL A Y K
Sbjct: 482 QMERAAAFFRRTQSRGENEGSEHAGYLYPVDGVARTLCASYRK 524


>gi|332970700|gb|EGK09681.1| modification methylase DdeIM [Kingella kingae ATCC 23330]
          Length = 193

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 3  ACDFGVPQRRERLYIIDFLNPSVEFKFP-----TPLGIKPRLGDILEEHIDD 49
          A DFGVPQ R R + + F N +  F+FP       +  +  + D+ +  + D
Sbjct: 2  ASDFGVPQNRRRAFFVGFKNGT-RFEFPQATVKQHITAEQAISDLPDYSVAD 52


>gi|227486883|ref|ZP_03917199.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227541955|ref|ZP_03972004.1| DNA restriction-modification system DNA methylase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092957|gb|EEI28269.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227182398|gb|EEI63370.1| DNA restriction-modification system DNA methylase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 332

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + D+GVPQ R R  ++      S  F+FP P+  +  +G+ L   +++K      LW 
Sbjct: 152 SADYGVPQLRPRFILVALRKEYSPYFEFPEPMPHRITVGEALHGLMEEKGWPGADLWA 209


>gi|313675860|ref|YP_004053856.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942558|gb|ADR21748.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 412

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           +KA  + VPQ+RERL ++       +EF +P P      L D L++
Sbjct: 218 LKAIQYRVPQKRERLILVGIRKDIDIEFLYPKPHKKIYNLKDALKK 263


>gi|154504826|ref|ZP_02041564.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC 29149]
 gi|153794709|gb|EDN77129.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC 29149]
          Length = 422

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 151 LNSKNFGVPQNRERVFIIA 169


>gi|153814253|ref|ZP_01966921.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC 27756]
 gi|145848649|gb|EDK25567.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC 27756]
          Length = 422

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 151 LNSKNFGVPQNRERVFIIA 169


>gi|79835466|gb|ABB52093.1| Mod [Arthrospira platensis]
 gi|291569838|dbj|BAI92110.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 345

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 24/104 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH-----IDDKSTI 53
           + A ++GVPQ+RERL+++ +      + +P    L I    GD + +      I  K  +
Sbjct: 162 INAVNYGVPQKRERLFVVAY---QTAWNWPEAETLAIPYTAGDAIYDTASTIPIGAKF-L 217

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSAT----TNTLSAR 93
           +  + E   + +  +K                       TL+ R
Sbjct: 218 TPSMLEYIGRYEAKSKC---------VKPRDIYLDIPCRTLTCR 252


>gi|167746072|ref|ZP_02418199.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
 gi|167654587|gb|EDR98716.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
          Length = 476

 Score = 47.2 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL-- 57
           + A DFGVPQ RER ++I + L    E  F     +   + D           +++ L  
Sbjct: 251 LNAKDFGVPQNRERLIFIGNKLGIDNEVLFDEIESLSKTIPD---------YNLADALYG 301

Query: 58  WEGHQKRKENN 68
               +  ++ N
Sbjct: 302 LRSLRASRKRN 312


>gi|325270791|ref|ZP_08137382.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
 gi|324986907|gb|EGC18899.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
          Length = 437

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEE 45
           +KA  + VPQ+RERL+++   N     V F++P+P      L D   +
Sbjct: 217 LKAVMYKVPQKRERLFLVALRNDLSGHVTFRWPSPYHRIMTLRDAFFK 264


>gi|213863400|ref|ZP_03386655.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 60

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 1  MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP 37
          + + DF VPQ RER++II         F FP      P
Sbjct: 16 LNSKDFQVPQNRERVFIIGHSRRYRPRFLFPLRRENSP 53


>gi|78778033|ref|YP_394348.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
           deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498573|gb|ABB45113.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
           deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 657

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDI 42
           +KA D+G+PQ R R ++I F +  +   F FP  + +K  + D+
Sbjct: 160 IKASDYGLPQLRPRTFMIGFRDEDILKGFNFPPKIPLKFNMSDV 203


>gi|225017397|ref|ZP_03706589.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
           DSM 5476]
 gi|224949807|gb|EEG31016.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
           DSM 5476]
          Length = 485

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDIL 43
           +    FG PQ RER++I+   +P        FP P G    L  ++
Sbjct: 152 LNTKYFGPPQNRERVFIVACRHPGAGRGPKIFPVPAGSGKALIQLI 197


>gi|257464589|ref|ZP_05628960.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
           202]
 gi|257450249|gb|EEV24292.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
           202]
          Length = 331

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           + A DFGVPQ R R+  I       +  FP P   + +
Sbjct: 153 LNAADFGVPQLRSRIVFIG-RKDKGKILFPEPSHREYK 189


>gi|253569226|ref|ZP_04846636.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
 gi|251841245|gb|EES69326.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
          Length = 448

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 5   DFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR-LGDILEEHIDDKSTISN----- 55
            FGVPQ R R+YI+  L+       F+FP         +  I+     D  ++       
Sbjct: 150 YFGVPQHRNRIYIVGRLHSKGGLKGFEFPDYTQRPECHISSIIHPEDTDYMSLRPITRKH 209

Query: 56  -KLWEGHQKRKENN 68
            + WE   +  + +
Sbjct: 210 LEAWEHFLQLLDKH 223


>gi|325285907|ref|YP_004261697.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321361|gb|ADY28826.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 47.2 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           +KA ++ VPQ+RER+ ++       +++++P P      L D L++
Sbjct: 219 LKAINYKVPQKRERVILVGVRKDIDIKYEYPKPHNKIYNLIDALKK 264


>gi|218133430|ref|ZP_03462234.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990805|gb|EEC56811.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
           43243]
          Length = 320

 Score = 46.8 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ RER++II 
Sbjct: 151 LNSKNFGVPQNRERVFIIA 169


>gi|291543286|emb|CBL16395.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 369

 Score = 46.8 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + +  FGVPQ+R RLYI+ +L+P      FP   G    L  ++      +   ++
Sbjct: 147 LNSKYFGVPQQRRRLYIVGYLDPRCAGKVFPLSGGNAKNLKQLIPGPQGQRVYETD 202


>gi|188533112|ref|YP_001906909.1| C-5 cytosine-specific DNA methylase family protein [Erwinia
           tasmaniensis Et1/99]
 gi|188028154|emb|CAO96012.1| C-5 cytosine-specific DNA methylase family protein [Erwinia
           tasmaniensis Et1/99]
          Length = 395

 Score = 46.8 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ R R++I+   + 
Sbjct: 167 LNAKDYGVPQNRNRVFILGLRDD 189


>gi|300727022|ref|ZP_07060441.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
           bryantii B14]
 gi|299775566|gb|EFI72157.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
           bryantii B14]
          Length = 446

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 1   MKACDFGVPQRRERLYIID----FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK 56
           + A DFG+PQ+R+R+YI+     F   ++EF  P    ++  +   L   +D+K T   K
Sbjct: 159 LDASDFGIPQKRKRVYIVGCKKRFGEINLEFNNPKIKTVEGCIEHGL-PVLDNKFT---K 214

Query: 57  LWEGHQKRKE 66
           L   +   K+
Sbjct: 215 LLLSYYSPKK 224


>gi|187778292|ref|ZP_02994765.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
           15579]
 gi|187771917|gb|EDU35719.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + DFGVPQ RER++ I  L      K FP
Sbjct: 146 LNSKDFGVPQNRERVFTIGHLRRYGRRKIFP 176


>gi|91206207|ref|YP_538562.1| site-specific DNA methylase [Rickettsia bellii RML369-C]
 gi|91069751|gb|ABE05473.1| Site-specific DNA methylase [Rickettsia bellii RML369-C]
          Length = 308

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----SVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A  FGVPQ RER+Y +          ++++  P        L DILE+ ID    I
Sbjct: 142 LNASLFGVPQARERVYFVCLRKDFSSEYNLKYIKPKESYENVFLNDILEKDIDKNLYI 199


>gi|320333452|ref|YP_004170163.1| DNA-cytosine methyltransferase [Deinococcus maricopensis DSM 21211]
 gi|319754741|gb|ADV66498.1| DNA-cytosine methyltransferase [Deinococcus maricopensis DSM 21211]
          Length = 326

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-LGIKPRLGDIL 43
           + A D+GVPQ R R+ ++        ++ +P P     P +G+ L
Sbjct: 149 LNARDYGVPQLRPRVILVALRPDVMAQYSWPEPHPEAAPTVGEAL 193


>gi|160933407|ref|ZP_02080795.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
 gi|156867284|gb|EDO60656.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
          Length = 382

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + + DFGVPQ R+R+Y++ +L+ 
Sbjct: 149 LNSKDFGVPQSRKRVYLVGYLDE 171


>gi|317056067|ref|YP_004104534.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
 gi|315448336|gb|ADU21900.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
          Length = 425

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + + DFGVPQ R+R++II FL   
Sbjct: 146 LNSADFGVPQARKRVFIIGFLRGE 169


>gi|269122950|ref|YP_003305527.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268314276|gb|ACZ00650.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 328

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL-GIKPRLGDILEEHIDDKSTISNKLW 58
           + A D+GVPQ R+R++ I F    +++F  P    G K    D +         + +   
Sbjct: 142 LNASDYGVPQDRKRVFYIGFRKDLNIKFDKPPKQYGYKVTFKDAI-------YDLKDTAI 194

Query: 59  EGHQKRKENNKIAG 72
                  E NK  G
Sbjct: 195 PAL----EKNKTNG 204


>gi|160873497|ref|YP_001552813.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|160859019|gb|ABX47553.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|315265725|gb|ADT92578.1| DNA-cytosine methyltransferase [Shewanella baltica OS678]
          Length = 385

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+GVPQ R+R++I    N 
Sbjct: 158 LNAKDYGVPQNRKRVFIFGTRND 180


>gi|53804329|ref|YP_114062.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758090|gb|AAU92381.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 345

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           A D+GVPQ RER+ I+  L     F+ P P+    R 
Sbjct: 196 AADYGVPQTRERVLIVGTLPGVKPFEPPKPIISPSRY 232


>gi|254413051|ref|ZP_05026823.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180215|gb|EDX75207.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 353

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 1   MKACDFGVPQRRERLYII----DFL-NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + A D+GVPQRRERL+ +     +  +P      P  +G    LG++      +   ++ 
Sbjct: 162 LNAADYGVPQRRERLFCVAHRGGWKWHPKTHHNLPYTVGE--ALGELALIVPLNAKFLTP 219

Query: 56  KLWEGHQKRKENNK 69
            + E  +K ++ +K
Sbjct: 220 SMDEYIKKYEKASK 233


>gi|315636653|ref|ZP_07891886.1| modification methylase Eco47II [Arcobacter butzleri JV22]
 gi|315479079|gb|EFU69779.1| modification methylase Eco47II [Arcobacter butzleri JV22]
          Length = 411

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDILEE-HIDDKSTISNK 56
           +KA  + VPQ+RERL I+         V + +P P      L D L++  + DK    + 
Sbjct: 217 LKAIYYKVPQKRERLIIVGIKKEFMEKVTYSYPEPNEKIYTLKDALKKGELFDKDVPKSS 276

Query: 57  LWEGHQKRKE 66
             +  +++KE
Sbjct: 277 GQKYPKRKKE 286


>gi|283834911|ref|ZP_06354652.1| C-5 cytosine-specific DNA methylase family protein [Citrobacter
           youngae ATCC 29220]
 gi|291069174|gb|EFE07283.1| C-5 cytosine-specific DNA methylase family protein [Citrobacter
           youngae ATCC 29220]
          Length = 400

 Score = 46.8 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPT 31
           + A D+GVPQ R R++I+   +     E  +P 
Sbjct: 171 LNAKDYGVPQNRNRVFILGLRSDVNIGEVTWPP 203


>gi|298373723|ref|ZP_06983712.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274775|gb|EFI16327.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 457

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 6   FGVPQRRERLYIIDFLNPS---VEFKFPTPLGIKPRLGDILEEH 46
           F +PQ R R+YI+           F FPTP   K  +  I++E+
Sbjct: 161 FSIPQHRRRIYIVCVDKNKRSLEGFSFPTPTKNKCEISKIIDEN 204


>gi|119513472|ref|ZP_01632497.1| cytosine-specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119461873|gb|EAW42885.1| cytosine-specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 400

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A ++GVPQ RER+ ++ F N  + 
Sbjct: 172 INAIEYGVPQDRERIILVGFRNNLIN 197


>gi|119493084|ref|ZP_01624009.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
 gi|119452829|gb|EAW34004.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
          Length = 441

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST---ISNKL 57
           + A  +GVPQ+RERL+++          +P P    P         +  + +    +  +
Sbjct: 165 LNAAYYGVPQKRERLFLLGCREDLALPNYPEPTFQPPY------SQVAKRYSHLPPTPTV 218

Query: 58  WEGHQK 63
            E  Q 
Sbjct: 219 REALQD 224


>gi|127429|sp|P06530|MTBR_BACSU RecName: Full=Modification methylase BsuRI; Short=M.BsuRI; AltName:
           Full=Cytosine-specific methyltransferase BsuRI
 gi|40247|emb|CAA26731.1| unnamed protein product [Bacillus subtilis]
          Length = 436

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A D+GVPQ RER+ I       S  +K+P+P   +
Sbjct: 227 LNARDYGVPQLRERVIIEGVRKDISFNYKYPSPTHGE 263


>gi|125974232|ref|YP_001038142.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
           27405]
 gi|125714457|gb|ABN52949.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
           27405]
          Length = 483

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 1   MKACDFGVPQRRERLYI 17
           + + DFGVPQ RER++I
Sbjct: 148 LNSKDFGVPQNRERVFI 164


>gi|317506898|ref|ZP_07964670.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254826|gb|EFV14124.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 331

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEE 45
           + A +FGVPQ R R  ++        +F++P  +   P +G  L  
Sbjct: 148 LNASEFGVPQLRPRFILVAMKRRDFRKFEWPRAISAPPTVGSALRP 193


>gi|281416239|ref|YP_003347588.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209504|gb|ACZ64045.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209572|gb|ACZ64112.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3B]
          Length = 317

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1   MKACDFGVPQRRERLY-IIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           + A DFG+PQ+R+R++ I         F       +KP L + LE   D K  ++
Sbjct: 149 LNAMDFGIPQKRKRVFAISKLDGEPFNFDLLKHRPLKP-LRNFLEVTTDQKYLVT 202


>gi|210621902|ref|ZP_03292899.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
 gi|210154533|gb|EEA85539.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
          Length = 438

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A D+GVPQRR R+  I +     + ++P P 
Sbjct: 181 LNAADYGVPQRRNRIIFIGYKKGLKQPQYPEPT 213


>gi|325298663|ref|YP_004258580.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
 gi|324318216|gb|ADY36107.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
          Length = 463

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG-----IKPRLGDILE 44
           + A DF +PQ R R++++ FL   +  F FP PL      ++  +GDI E
Sbjct: 143 LNAADFRIPQDRYRVFVVGFLKDLNCNFHFPHPLQNAHITLQKAIGDINE 192


>gi|328471744|gb|EGF42621.1| putative C-5 cytosine-specific DNA methylase [Vibrio
           parahaemolyticus 10329]
          Length = 392

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 28/92 (30%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----------SVEFKF-------------PTPLGIK 36
           + A D+GVPQ R+R +I+   +               F               P     +
Sbjct: 160 LNAKDYGVPQNRKRAFILGIRDDVKIDKLVFPPKKTHFSPSSQEVAGGASSWTPASSVFE 219

Query: 37  PRLGDILEEHIDDK---ST-ISNKLWEGHQKR 64
           P   DI+E  + D     T +S+     +  R
Sbjct: 220 PITSDIIERFVTDHFRPYTKLSDDDARYYLNR 251


>gi|228982443|ref|ZP_04142702.1| Cytosine-specific methyltransferase [Bacillus thuringiensis Bt407]
 gi|228776626|gb|EEM24934.1| Cytosine-specific methyltransferase [Bacillus thuringiensis Bt407]
          Length = 418

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 5   DFGVPQRRERLYIIDFL-NPSVEFKFPTPLGI--KPRLGDILEEHIDDKSTISNKLWEGH 61
           ++G+PQ R+R++++    N    F+FP  + I  +  + D + +  +    +++   +  
Sbjct: 162 EYGIPQHRKRVFMVGIRSNLGKTFEFPEIVSISERKTIRDAIGDLPNPDKVMNS--LKDI 219

Query: 62  QKRKENNKIAGKGFGYGLFFENSA 85
           Q   +         GYG+  +   
Sbjct: 220 QYEAQEQSSVHNHVGYGIRSDEKE 243


>gi|309789600|ref|ZP_07684181.1| BsaWI methylase [Oscillochloris trichoides DG6]
 gi|308228336|gb|EFO81983.1| BsaWI methylase [Oscillochloris trichoides DG6]
          Length = 436

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 14/77 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL----------GDI--LEEHID 48
           + A ++GVPQ RERL+II   + S+   FPTP     +L          GD+  L+   +
Sbjct: 173 LNAANYGVPQFRERLFIIATSDSSLPIIFPTPTHGYTKLLPWNTVEDAIGDLPPLDNGEE 232

Query: 49  DKSTISNKL--WEGHQK 63
               +S  +  ++   +
Sbjct: 233 KNFYLSPPMKPYQYLMR 249


>gi|251811836|ref|ZP_04826309.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875124|ref|ZP_06283997.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           SK135]
 gi|251804633|gb|EES57290.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295889|gb|EFA88410.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           SK135]
          Length = 329

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
           ++  D+ +PQ+R+R++I+ + N  +EF +P  L  K  + + + +    K
Sbjct: 153 LQTSDYNIPQKRQRVFIVGYKN--IEFNYPEKLKRKVTIKEAISDLPPLK 200


>gi|27733906|ref|NP_775697.1| putative C5-methyltransferase [Leuconostoc citreum]
 gi|27552370|emb|CAD38156.1| putative C5-methyltransferase [Leuconostoc citreum]
          Length = 403

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 1   MKACDFGVPQRRERLYIID--FLNPSVEF----KFPTPLGIKPRLG 40
           + A D+GVPQ RER++++         +F    KFP P   +  L 
Sbjct: 217 VNARDYGVPQSRERVFLVGTNIKKVKQKFDWKYKFPNPTHGEKLLP 262


>gi|284054848|ref|ZP_06385058.1| DNA-cytosine methyltransferase [Arthrospira platensis str. Paraca]
          Length = 220

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 24/104 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH-----IDDKSTI 53
           + A ++GVPQ+RERL+++ +      + +P    L I    GD + +      I  K  +
Sbjct: 77  INAVNYGVPQKRERLFVVAY---QTAWNWPEAETLAIPYTAGDAIYDTASTIPIGAKF-L 132

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSAT----TNTLSAR 93
           +  + E   + +  +K                       TL+ R
Sbjct: 133 TPSMLEYIGRYEAKSKC---------VKPRDIYLDIPCRTLTCR 167


>gi|227485932|ref|ZP_03916248.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235977|gb|EEI85992.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 358

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 29/93 (31%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR---------------------- 38
           + + + GVPQ RER YI    N   +   P     K                        
Sbjct: 148 INSVESGVPQNRERTYICGIYNFENDKYLPDSRNFKVNKLKEKLNKSNFNGFNFFNSLIF 207

Query: 39  ------LGDILEEHIDDKSTI-SNKLWEGHQKR 64
                 + DI+++ +D K  + + KL E     
Sbjct: 208 DSKQIYIEDIIDKSVDTKYYLDNPKLNEYINNY 240


>gi|225375779|ref|ZP_03753000.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans DSM
           16841]
 gi|225212376|gb|EEG94730.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans DSM
           16841]
          Length = 431

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTP 32
           + + DFGVPQ R+R+YI+  F         P P
Sbjct: 150 LNSKDFGVPQARKRVYIVGYFDFRCAGKVLPEP 182


>gi|46019864|emb|CAE52388.1| putative cytosine-specific methyltransferase [Streptococcus
           thermophilus]
 gi|312279225|gb|ADQ63882.1| Cytosine-specific methyltransferase [Streptococcus thermophilus
           ND03]
          Length = 515

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-LGIKPRLGDIL 43
           + + +FGVPQ+R R+  + + N     ++P P +  +  + D L
Sbjct: 182 LNSANFGVPQQRNRVVFLAYRNDVNPLEYPEPNVLPEVTVRDAL 225


>gi|313677760|ref|YP_004055756.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944458|gb|ADR23648.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 46.4 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI------KPRLGDILEEHIDD--KST 52
           + A DF VPQ R R + +  L  S+EF+FP P+        +  + D+ ++ ++D  + T
Sbjct: 152 LLASDFAVPQNRRRAFFVG-LKNSLEFEFPKPITTDNKITSEEAISDLPKDSLEDGCQYT 210

Query: 53  ISNK 56
           I+ K
Sbjct: 211 INPK 214


>gi|295395397|ref|ZP_06805596.1| modification methylase NaeI [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971719|gb|EFG47595.1| modification methylase NaeI [Brevibacterium mcbrellneri ATCC 49030]
          Length = 355

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTP-LGIKPRLGDILEEH 46
           + DFGVPQ R R  ++   +   +F+FP+    ++  +G IL++ 
Sbjct: 147 SADFGVPQLRPRAVLVALKDGEADFEFPSGDTSLRVPVGPILKDE 191


>gi|262283394|ref|ZP_06061160.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
           2_1_36FAA]
 gi|262260885|gb|EEY79585.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
           2_1_36FAA]
          Length = 460

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  FGVPQ R+R++++ 
Sbjct: 147 LNSSHFGVPQNRQRIFLVG 165


>gi|237737311|ref|ZP_04567792.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421173|gb|EEO36220.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 407

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A DFGVPQ R+R+ II + N  + FK+P    IK
Sbjct: 194 LDAKDFGVPQSRKRVIIIGWKNE-LNFKYPNFETIK 228


>gi|22538008|ref|NP_688859.1| prophage LambdaSa2, type II DNA modification methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|22534910|gb|AAN00732.1|AE014276_13 prophage LambdaSa2, type II DNA modification methyltransferase,
           putative [Streptococcus agalactiae 2603V/R]
          Length = 437

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 2   KACDFGVPQRRERLYIID 19
            + +FGVPQ RER++II 
Sbjct: 148 NSKNFGVPQNRERVFIIG 165


>gi|295104578|emb|CBL02122.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 293

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-----RLGDILEEHIDDK 50
           A D+GVPQ RER+  +       EF  P P    P      L D LE H  DK
Sbjct: 143 AEDYGVPQTRERVIFVGTRKTLPEFVPPKPSVFAPITAYEALHD-LENHPQDK 194


>gi|50949214|emb|CAF31654.1| putative C5-methyltransferase [Cloning vector pGID052]
          Length = 307

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 1   MKACDFGVPQRRERLYIID--FLNPSVEF----KFPTPLGIKPRLG 40
           + A D+GVPQ RER++++         +F    KFP P   +  L 
Sbjct: 217 VNARDYGVPQSRERVFLVGTNIKKVKQKFDWKYKFPNPTHGEKLLP 262


>gi|255520393|ref|ZP_05387630.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes FSL
           J1-175]
          Length = 451

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPRLGDILEEHIDDK 50
            + ++GVPQ RER++II  L  +   + FP     +    + ++   D K
Sbjct: 149 NSKNYGVPQNRERVFIIGHLRGAGGREIFPLGGENRTFNKNDIKAINDSK 198


>gi|1171048|sp|P25263|MTC1_HERAU RecName: Full=Modification methylase HgiCI; Short=M.HgiCI; AltName:
           Full=Cytosine-specific methyltransferase HgiCI
 gi|515372|emb|CAA38933.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 420

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 21/94 (22%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK--------------------PRLG 40
           + + +F VPQ R R+YI+       E    + +G                        + 
Sbjct: 145 LNSSNFQVPQNRLRVYIVGLDQSQPELTITSHIGATDSHKFKQLSNQASLFDTNKIMLVR 204

Query: 41  DILEEHIDDKSTISNKLWEGHQKRKENNKIAGKG 74
           DILE+H  DK   S             + I   G
Sbjct: 205 DILEDHPLDKYNCSTDFVNKLLA-FIGHPIKLNG 237


>gi|296329951|ref|ZP_06872435.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676676|ref|YP_003868348.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152990|gb|EFG93855.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414920|gb|ADM40039.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 488

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A DFGVPQ R R++II 
Sbjct: 183 LNAADFGVPQHRRRIFIIA 201


>gi|262171500|ref|ZP_06039178.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
 gi|261892576|gb|EEY38562.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
          Length = 416

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGD 41
           +KA  F VPQ+RERL ++        SVEF +P+P      L D
Sbjct: 222 LKAIFFKVPQKRERLILVGIRKDLANSVEFHWPSPYKKIMTLRD 265


>gi|284052085|ref|ZP_06382295.1| DNA-cytosine methyltransferase [Arthrospira platensis str. Paraca]
          Length = 382

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++G+PQRRER++I+        E+ FP            LE  +  +   S   W 
Sbjct: 174 LDAENYGIPQRRERVFIVGVREDWQREWSFPQESHS-------LESLLWSQYV-SFDYWN 225

Query: 60  GH 61
            H
Sbjct: 226 NH 227


>gi|261415336|ref|YP_003249019.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371792|gb|ACX74537.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326638|gb|ADL25839.1| cytosine specific DNA methyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 418

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 2   KACDFGVPQRRERLYIIDFLN------------PSVEFKFPTPLGIKPRLGDILEEHIDD 49
            A ++G PQ+RER+ II   +             +  F  P    +   L D L+E++ +
Sbjct: 191 NAANYGAPQKRERIVIICSRDGSKAPYLTPTHSETGLFNLPKWRTVSEVLND-LDENVQE 249

Query: 50  KSTISNKLWEGHQKRKE 66
            S  S K  +  +  K 
Sbjct: 250 YSKFSEKRLKFFRMLKA 266


>gi|153854028|ref|ZP_01995361.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
 gi|149753410|gb|EDM63341.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
          Length = 468

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTP 32
           + + DFGVPQ R+R+YI+  F         P P
Sbjct: 187 LNSKDFGVPQARKRVYIVGYFDFRCAGKVLPEP 219


>gi|291566149|dbj|BAI88421.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 379

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++G+PQRRER++I+        E+ FP            LE  +  +   S   W 
Sbjct: 171 LDAENYGIPQRRERVFIVGVREDWQREWSFPQESHS-------LESLLWSQYV-SFDYWN 222

Query: 60  GH 61
            H
Sbjct: 223 NH 224


>gi|326559503|gb|EGE09926.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 7169]
          Length = 354

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A  +GV Q R R+ I+        + K+P PL  +  L D  +  I  K  I + LWE
Sbjct: 179 LNASHYGVAQNRVRVIIVGIRKDIDKKMKYPKPLFGE--LSDSQKPVITSKQAI-DDLWE 235

Query: 60  GHQK----RKENNKIAGKGFGY 77
                     +N+    K F  
Sbjct: 236 LLDDNINSHSKNHYSKAK-FYP 256


>gi|326567273|gb|EGE17393.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326568220|gb|EGE18302.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC8]
          Length = 354

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A  +GV Q R R+ I+        + K+P PL  +  L D  +  I  K  I + LWE
Sbjct: 179 LNASHYGVAQNRVRVIIVGIRKDIDKKMKYPKPLFGE--LSDSQKPVITSKQAI-DDLWE 235

Query: 60  GHQK----RKENNKIAGKGFGY 77
                     +N+    K F  
Sbjct: 236 LLDDNINSHSKNHYSKAK-FYP 256


>gi|288799842|ref|ZP_06405301.1| modification methylase BepI (Cytosine-specific methyltransferase
           BepI) [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333090|gb|EFC71569.1| modification methylase BepI (Cytosine-specific methyltransferase
           BepI) [Prevotella sp. oral taxon 299 str. F0039]
          Length = 406

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI---------LEEHIDDKS 51
           + A  +GVPQ RER+  I F   ++  +    L       ++         +E  I D  
Sbjct: 195 LHAGRYGVPQNRERIIFIGFRKDALTEEALEMLKESVPFDEVSPYPAPTHYIESDIVDLY 254

Query: 52  TISNKLWE 59
             ++ L +
Sbjct: 255 YETSSLLK 262


>gi|33322745|gb|AAQ07107.1|AF496419_1 cytosine-specific DNA methyltransferase [Lactobacillus delbrueckii
           subsp. lactis]
          Length = 138

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A +FGVPQ RERL  I       +
Sbjct: 106 LNARNFGVPQNRERLIYIGIRKDIAD 131


>gi|7243959|gb|AAB21481.2| cytosine DNA methyltransferase homolog [Neisseria gonorrhoeae]
          Length = 347

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 196


>gi|18700048|gb|AAL03949.1| DNA methyltransferase Bse634IM [Geobacillus stearothermophilus]
          Length = 387

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 9/44 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---------FKFPTPLGI 35
           + A +FG+PQ R R++II F N  +E         F++PTP+  
Sbjct: 172 LNALEFGIPQDRARVFIIGFKNSIIETLQENYMDAFQWPTPIYP 215


>gi|330882498|gb|EGH16647.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 335

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDILEE 45
           + A D+GV Q R R+  +       + F +P P L   P +G +L +
Sbjct: 162 LNASDYGVSQLRPRVVFVGIQKKYADKFHWPEPGLVQPPTVGQLLHD 208


>gi|116627564|ref|YP_820183.1| site-specific DNA methylase [Streptococcus thermophilus LMD-9]
 gi|116100841|gb|ABJ65987.1| Site-specific DNA methylase [Streptococcus thermophilus LMD-9]
          Length = 406

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI-LEEHIDD 49
           + A ++GVPQ RER+ II      ++  FP P    P   ++ L   + D
Sbjct: 147 LNAAEYGVPQARERVIIIG-NRIGIDNPFPKPTHKIPDENELDLFPELPD 195


>gi|91215328|ref|ZP_01252299.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
 gi|91186280|gb|EAS72652.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
          Length = 412

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEE 45
           +KA ++ VPQ+RERL ++       +E+ +P+P      L D L++
Sbjct: 221 LKAINYNVPQKRERLILVGVRKDIDLEYVYPSPYEKVYNLSDALKK 266


>gi|302876802|ref|YP_003845435.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687485|ref|ZP_07629931.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579659|gb|ADL53671.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 363

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + A D+G+PQ R+R++ +   N   EF+FP 
Sbjct: 155 LYAPDYGIPQIRKRVFFVGLRNSDTEFEFPE 185


>gi|170680813|ref|YP_001746263.1| DNA-cytosine methyltransferase family protein [Escherichia coli
           SMS-3-5]
 gi|307315390|ref|ZP_07594959.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|33413740|gb|AAN28260.1| Mth [Enterobacteria phage WPhi]
 gi|170518531|gb|ACB16709.1| DNA-cytosine methyltransferase family protein [Escherichia coli
           SMS-3-5]
 gi|306905264|gb|EFN35809.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|315063217|gb|ADT77544.1| DNA cytosine methylase [Escherichia coli W]
 gi|323380718|gb|ADX52986.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
          Length = 312

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG 34
           + A  +GV Q R+R++I+       + +KFP P  
Sbjct: 141 LNASHYGVSQDRKRIFIVGIRKDYGITYKFPKPTH 175


>gi|261364680|ref|ZP_05977563.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
 gi|288566964|gb|EFC88524.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
          Length = 419

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDIL 43
           +KA  + VPQ+RERL++I         VEF +P+P      L D L
Sbjct: 220 LKAVFYKVPQKRERLFLIGIRKDLADKVEFHWPSPYHRILTLQDAL 265


>gi|325965496|ref|YP_004243400.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471583|gb|ADX75266.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
          Length = 389

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           ++GVPQRR+R+ I+        +F+ P+P        DI    +  KS ++
Sbjct: 183 EYGVPQRRQRIVIVGIREDLQTDFRVPSPE----IYNDI---DVSAKSALT 226


>gi|315169253|gb|EFU13270.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1341]
          Length = 521

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A  FGVPQ+R R+  + + N  V   +P     +  + D
Sbjct: 182 LNAAHFGVPQQRNRVVFLAYRNDVVPVTYPVINNDRTTVYD 222


>gi|309389435|gb|ADO77315.1| DNA-cytosine methyltransferase [Halanaerobium praevalens DSM 2228]
          Length = 328

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           ++  D+G+PQRR+R+ I+        F+FP        + D +++
Sbjct: 152 LQTSDYGIPQRRKRIIIVG--TKDYTFEFPKKNNSVITVKDAIDD 194


>gi|332359910|gb|EGJ37724.1| C-5 cytosine-specific DNA methylase superfamily protein
           [Streptococcus sanguinis SK1056]
          Length = 516

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------RLGDIL--EEHIDDKST 52
           + A +FGVPQ+R R+  + + N     ++P      P       LGD+   E   +   +
Sbjct: 182 LNAANFGVPQQRNRVVFLAYRNDVAPLQYPESDNDIPNATVYDALGDLYGGEFSYETDYS 241

Query: 53  ISNKL 57
           + ++L
Sbjct: 242 LQSRL 246


>gi|326789360|ref|YP_004307181.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326540124|gb|ADZ81983.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 446

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDILEEHID 48
           + A D+GVPQ RER+++I    N +V ++ P           IL + + 
Sbjct: 165 LNAADYGVPQIRERVFVIAIKKNENVRYELPKA-----TYASILSDRVS 208


>gi|15901190|ref|NP_345794.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae TIGR4]
 gi|14972819|gb|AAK75434.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae TIGR4]
          Length = 407

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 16/85 (18%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVP+ RER++II           FP     +    + L            +  K
Sbjct: 149 LNSKDFGVPKNRERVFIIGHSRKKGTRLLFPFRREGQATNSETLKALGNLNPSRSGMSGK 208

Query: 51  STISNKLWEGHQKRKENNKIAGKGF 75
              S  L     +        G+GF
Sbjct: 209 VYYSEGLAPTLVR------GKGEGF 227


>gi|111656823|ref|ZP_01407675.1| hypothetical protein SpneT_02001911 [Streptococcus pneumoniae
           TIGR4]
 gi|148994722|ref|ZP_01823806.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae SP9-BS68]
 gi|148999034|ref|ZP_01826467.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae SP11-BS70]
 gi|307067986|ref|YP_003876952.1| site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|147755157|gb|EDK62211.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae SP11-BS70]
 gi|147927053|gb|EDK78094.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           pneumoniae SP9-BS68]
 gi|306409523|gb|ADM84950.1| Site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|332074668|gb|EGI85142.1| modification methylase HpaII [Streptococcus pneumoniae GA17545]
 gi|332200781|gb|EGJ14853.1| modification methylase HpaII [Streptococcus pneumoniae GA41317]
 gi|332201799|gb|EGJ15869.1| modification methylase HpaII [Streptococcus pneumoniae GA47368]
          Length = 392

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 16/85 (18%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKPRLGDIL---------EEHIDDK 50
           + + DFGVP+ RER++II           FP     +    + L            +  K
Sbjct: 134 LNSKDFGVPKNRERVFIIGHSRKKGTRLLFPFRREGQATNSETLKALGNLNPSRSGMSGK 193

Query: 51  STISNKLWEGHQKRKENNKIAGKGF 75
              S  L     +        G+GF
Sbjct: 194 VYYSEGLAPTLVR------GKGEGF 212


>gi|307354298|ref|YP_003895349.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM
           11571]
 gi|307157531|gb|ADN36911.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM
           11571]
          Length = 421

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP 30
           + A DFGV Q R+R+  I +     +F++P
Sbjct: 202 LNARDFGVLQNRKRIIFIGWKKEH-DFEYP 230


>gi|268686152|ref|ZP_06153014.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
 gi|268626436|gb|EEZ58836.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
          Length = 374

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 196


>gi|11386930|sp|Q59606|MTF7_NEIGO RecName: Full=Modification methylase NgoFVII; Short=M.NgoFVII;
           AltName: Full=Cytosine-specific methyltransferase
           NgoFVII; Short=M.NgoVII
 gi|1165245|gb|AAA86270.1| M.NgoVII [Neisseria gonorrhoeae]
          Length = 374

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 196


>gi|238923038|ref|YP_002936551.1| DcmB [Eubacterium rectale ATCC 33656]
 gi|238874710|gb|ACR74417.1| DcmB [Eubacterium rectale ATCC 33656]
          Length = 672

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV + R+R++ I F    +++F FP         G   E+  D K T+ + +W+
Sbjct: 148 VNAKDYGVAEERKRVFYIGFRKDLNIDFGFPK--------GSTKED--DKKITLRDIIWD 197


>gi|254416815|ref|ZP_05030564.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176361|gb|EDX71376.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 391

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEF----------KFPTPLGIKPRLGDILEEHIDD 49
           ++A D+GVPQ RER+  I   +  SV F            P    ++  L +++E++ + 
Sbjct: 187 LQAADYGVPQNRERVVFIGSRDSESVTFPLATHCQSGRDLPKWRTLRDALTNLVEQNPE- 245

Query: 50  KST-ISNKLWEGHQ 62
             T  S K  +  +
Sbjct: 246 -FTPYSEKRLKYLR 258


>gi|319787787|ref|YP_004147262.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466299|gb|ADV28031.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 425

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 15/65 (23%)

Query: 3   ACDFGVPQRRERLYIIDFLNP--------------SVEFKFPTP-LGIKPRLGDILEEHI 47
           A D+GVPQ R R+ ++   N                     P P  G  P L D+L + I
Sbjct: 186 AKDYGVPQNRPRVLLVGVRNDVGSGLKREGKDEDAIARGYLPAPAPGSAPDLVDLLGDLI 245

Query: 48  DDKST 52
           D    
Sbjct: 246 DPDYV 250


>gi|294635767|ref|ZP_06714227.1| C-5 cytosine-specific DNA methylase family protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090867|gb|EFE23428.1| C-5 cytosine-specific DNA methylase family protein [Edwardsiella
           tarda ATCC 23685]
          Length = 403

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGD 41
           + A D+GVPQ R+R +I+       +  F++P P     + G 
Sbjct: 160 LNARDYGVPQSRKRAFILAVRKDICTDGFEWP-PKATHTKSGS 201


>gi|59800809|ref|YP_207521.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA 1090]
 gi|254493277|ref|ZP_05106448.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|260440968|ref|ZP_05794784.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           DGI2]
 gi|268594414|ref|ZP_06128581.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           35/02]
 gi|268596411|ref|ZP_06130578.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA19]
 gi|268598542|ref|ZP_06132709.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268600894|ref|ZP_06135061.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268681681|ref|ZP_06148543.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268683908|ref|ZP_06150770.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291044296|ref|ZP_06570005.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           DGI2]
 gi|293399487|ref|ZP_06643640.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717704|gb|AAW89109.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA 1090]
 gi|226512317|gb|EEH61662.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|268547803|gb|EEZ43221.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           35/02]
 gi|268550199|gb|EEZ45218.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA19]
 gi|268582673|gb|EEZ47349.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268585025|gb|EEZ49701.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268621965|gb|EEZ54365.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268624192|gb|EEZ56592.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291011190|gb|EFE03186.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           DGI2]
 gi|291610056|gb|EFF39178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 374

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 196


>gi|170754579|ref|YP_001781640.1| DNA-cytosine methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169119791|gb|ACA43627.1| DNA-cytosine methyltransferase [Clostridium botulinum B1 str. Okra]
          Length = 444

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIK 36
           A D+GVPQ RER++++       +  F +P     +
Sbjct: 187 ASDYGVPQNRERVFLVAINEKYGDNKFIYPEKTHGE 222


>gi|237753192|ref|ZP_04583672.1| cytosine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375459|gb|EEO25550.1| cytosine specific DNA methyltransferase [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 354

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DF VPQ RER + I   +      FP P  ++  + D + +
Sbjct: 156 LNAKDFCVPQNRERAFFIA--HKKEYLGFPAPSEMQVCVKDAISD 198


>gi|113474395|ref|YP_720456.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110165443|gb|ABG49983.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 421

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A ++GVPQ RERL+I+ 
Sbjct: 155 LNAANYGVPQHRERLFILG 173


>gi|116620819|ref|YP_822975.1| DNA-cytosine methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223981|gb|ABJ82690.1| DNA-cytosine methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 419

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A D GVPQ RER++I+      ++
Sbjct: 195 LNALDLGVPQDRERVFIVGVHRRMIK 220


>gi|319776343|ref|YP_004138831.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
 gi|127460|sp|P20589|MTH3_HAEAE RecName: Full=Modification methylase HaeIII; Short=M.HaeIII;
           AltName: Full=Cytosine-specific methyltransferase HaeIII
 gi|148915|gb|AAA24970.1| methyltransferase [Haemophilus aegyptius]
 gi|2961233|gb|AAC05696.1| HaeIII DNA modification methyltransferase [Haemophilus influenzae
           biotype aegyptius]
 gi|317450934|emb|CBY87160.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
          Length = 330

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I F    ++ +  P P  IKP   D++ +       + +    
Sbjct: 142 LNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWD-------LKDNPIP 194

Query: 60  GHQKRKENNKIAGK 73
                 + NK  G 
Sbjct: 195 AL----DKNKTNGN 204


>gi|319897026|ref|YP_004135221.1| modification methylase haeiii [Haemophilus influenzae F3031]
 gi|317432530|emb|CBY80890.1| Modification methylase HaeIII [Haemophilus influenzae F3031]
          Length = 330

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I F    ++ +  P P  IKP   D++ +       + +    
Sbjct: 142 LNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWD-------LKDNPIP 194

Query: 60  GHQKRKENNKIAGK 73
                 + NK  G 
Sbjct: 195 AL----DKNKTNGN 204


>gi|147668731|ref|YP_001213549.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
 gi|146269679|gb|ABQ16671.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
          Length = 335

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGD 41
           + A D+ VPQ R+R+ I+ +     + F  P P+  KP L D
Sbjct: 143 LNAHDYSVPQDRKRVIIVGYHVKTELYFTPPKPIAHKPLLRD 184


>gi|255279956|ref|ZP_05344511.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
 gi|255269729|gb|EET62934.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
          Length = 475

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 1   MKACDFGVPQRRER-LYI 17
           + A DFGVPQ RER +YI
Sbjct: 247 LNAKDFGVPQNRERLIYI 264


>gi|240127759|ref|ZP_04740420.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 347

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 133 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 169


>gi|329123495|ref|ZP_08252059.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
 gi|327471077|gb|EGF16532.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
          Length = 217

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
          + A D+GV Q R+R++ I F    ++ +  P P  IKP   D++ +       + +    
Sbjct: 29 LNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWD-------LKDNPIP 81

Query: 60 GHQKRKENNKIAGK 73
                + NK  G 
Sbjct: 82 AL----DKNKTNGN 91


>gi|303237411|ref|ZP_07323977.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302482361|gb|EFL45390.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 383

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGD 41
           ++A  + VPQ+RER+ ++   N   P V F +P P      L D
Sbjct: 188 LEAIRYQVPQKRERIVLVAIRNDIAPKVTFHWPAPYYRLMTLND 231


>gi|194098099|ref|YP_002001147.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998556|ref|ZP_04718480.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           35/02]
 gi|240013681|ref|ZP_04720594.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           DGI18]
 gi|240016120|ref|ZP_04722660.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA6140]
 gi|240080261|ref|ZP_04724804.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           FA19]
 gi|240112474|ref|ZP_04726964.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           MS11]
 gi|240115214|ref|ZP_04729276.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           PID18]
 gi|240120750|ref|ZP_04733712.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           PID24-1]
 gi|240123054|ref|ZP_04736010.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           PID332]
 gi|240125307|ref|ZP_04738193.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           SK-92-679]
 gi|193933389|gb|ACF29213.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           NCCP11945]
 gi|317163831|gb|ADV07372.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 347

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 133 NFAEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 169


>gi|332665024|ref|YP_004447812.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333838|gb|AEE50939.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 366

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
           + A DF VPQ RER++ I F N S          I P L  +LE +
Sbjct: 144 LNATDFDVPQARERVFFIGFKNNS---------QIIPDLTKMLEPY 180


>gi|269978372|gb|ACZ55920.1| putative type I restriction-modification system specificity subunit
           S [Helicobacter pylori]
          Length = 263

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           +KA D+GVPQ RER+ II 
Sbjct: 152 LKASDYGVPQHRERVIIIG 170


>gi|1127162|pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
           Dna
 gi|1127163|pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
           Dna
          Length = 324

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I F    ++ +  P P  IKP   D++ +       + +    
Sbjct: 142 LNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWD-------LKDNPIP 194

Query: 60  GHQKRKENNKIAGK 73
                 + NK  G 
Sbjct: 195 AL----DKNKTNGN 204


>gi|270293678|ref|ZP_06199880.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
 gi|270275145|gb|EFA21005.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
          Length = 361

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A ++GVPQRR R++++   N  ++F+FP P   K  + +
Sbjct: 152 LWADEYGVPQRRMRMFMVG-NNQGIDFEFPKPFDYKVSVEE 191


>gi|229490017|ref|ZP_04383870.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
 gi|229323118|gb|EEN88886.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
          Length = 431

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLG 34
           + A D+GVPQ RER++I+     S     +FP    
Sbjct: 241 VNAQDYGVPQFRERVFIVATRRDSGIGPLRFPPKTH 276


>gi|226307434|ref|YP_002767394.1| modification methylase [Rhodococcus erythropolis PR4]
 gi|226186551|dbj|BAH34655.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 444

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFPTPLG 34
           + A D+GVPQ RER++I+     S     +FP    
Sbjct: 254 VNAQDYGVPQFRERVFIVATRRDSSIGPLRFPPKTH 289


>gi|58580230|ref|YP_199246.1| modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424824|gb|AAW73861.1| Modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 442

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R RL ++          +P P G +  +GD + +  D +S    +LWE
Sbjct: 173 LNAADYGVPQDRRRLILMGARKGLPLPAYPEPTG-RTTVGDAIGDIPDAESF--PELWE 228


>gi|458402|gb|AAA50432.1| M-XorII [Xanthomonas oryzae]
          Length = 424

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R RL ++          +P P G +  +GD + +  D +S    +LWE
Sbjct: 155 LNAADYGVPQDRRRLILMGARKGLPLPAYPEPTG-RTTVGDAIGDIPDAESF--PELWE 210


>gi|62297515|sp|P52311|MTX2_XANOR RecName: Full=Modification methylase XorII; Short=M.XorII; AltName:
           Full=Cytosine-specific methyltransferase XorII
          Length = 424

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R RL ++          +P P G +  +GD + +  D +S    +LWE
Sbjct: 155 LNAADYGVPQDRRRLILMGARKGLPLPAYPEPTG-RTTVGDAIGDIPDAESF--PELWE 210


>gi|60202518|gb|AAX14650.1| BbvCI methyltransferase 1 [Brevibacillus brevis]
          Length = 429

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGI--KPRLGDILEEHIDDKSTISNKL 57
           + A +FGVPQ RERL I       +  F +P P        +  + EE +  +  ++  L
Sbjct: 170 LNAANFGVPQFRERLIIAAVCKSEANNFFWPEPTHELGNSNITSLFEELMPTQPPLT--L 227

Query: 58  WE 59
           WE
Sbjct: 228 WE 229


>gi|291530602|emb|CBK96187.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 369

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + +  FGVPQ+R RLYI+ +L+P      FP        L  ++      +   ++
Sbjct: 147 LNSKYFGVPQQRRRLYIVGYLDPRCAGKVFPLSGCNAKNLKQLIPGPQGQRVYETD 202


>gi|124262880|ref|YP_001023350.1| C-5 cytosine-specific DNA methylase [Methylibium petroleiphilum
           PM1]
 gi|124262126|gb|ABM97115.1| C-5 cytosine-specific DNA methylase [Methylibium petroleiphilum
           PM1]
          Length = 473

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHIDDKSTISNKL 57
           + + ++ V + RERL ++      +EF F      +P   RLG+I++E   D    S   
Sbjct: 288 VNSAEWNVLEHRERLCVVAVTKG-IEFSFDGLERPEPVSRRLGEIMDEVPVDAPCWSEM- 345

Query: 58  WEGHQKRKENNKIAGKGFGYGLFFENSA 85
               + ++  ++  G  F   +   +S 
Sbjct: 346 -AYLKDKRARDEAKGNNFKMTVLTPDSE 372


>gi|332710686|ref|ZP_08430629.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332350562|gb|EGJ30159.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 450

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP-------------TPLGIKPRLGDILEEHI 47
           + A DFGVPQ+R RL+++          +P               +   P L D  E   
Sbjct: 179 LNAADFGVPQKRRRLFLLGSRLGEAPVAYPSSELSSHQWVTVKDAIADLPNLDDFPELQK 238

Query: 48  DDKSTISNKLWEGHQK 63
            D   ++ +  +  Q 
Sbjct: 239 SDCVELTPEQLDLLQA 254


>gi|330936955|gb|EGH41063.1| HsdRM [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 313

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG----------IKPRLGDILEEHIDD 49
           + A +FGV Q R+R++I+       +++ FP              I   +GD+ E    +
Sbjct: 141 LNAAEFGVAQERKRIFIVGIRKDFGIKYVFPEATHGDEKAHAGVTIHDAIGDMPEWPAGE 200

Query: 50  KSTISNKLWEGHQK 63
              +    W    +
Sbjct: 201 FYDL-PFHWYYLSR 213


>gi|293371778|ref|ZP_06618188.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292633230|gb|EFF51801.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
          Length = 337

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGD 41
           + A D+ VP+ R+R++ I F        F++PTP   KP L +
Sbjct: 144 LNANDYDVPEDRDRVFYIGFRKDLNIHNFEYPTPQKHKPTLRE 186


>gi|322514130|ref|ZP_08067198.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
 gi|322120016|gb|EFX92002.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
          Length = 356

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R+R++ I +     ++F+FP        +G  +++  D K ++ + +W+
Sbjct: 144 VNAKDYGVAQERKRVFYIGYRKDLGIDFEFP--------VGSTIDD--DKKISLKDIIWD 193


>gi|228469860|ref|ZP_04054799.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
 gi|228308495|gb|EEK17283.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
          Length = 359

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGD 41
           + A D+ VP+ R+R++ I F       EF+FP P+  +  L D
Sbjct: 146 LNAYDYEVPEDRKRVFYIGFRKDLDIKEFEFPVPIPKRLTLRD 188


>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
           canadensis MIT 98-5491]
 gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
           MIT 98-5491]
          Length = 589

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A  +GVPQ RER++ I   +      FP        + D + +
Sbjct: 152 LNAKHYGVPQNRERVFFIA--HKERLLSFPKESNCLVSVKDAISD 194


>gi|262192113|ref|ZP_06050275.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
 gi|262032024|gb|EEY50600.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
          Length = 393

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 16/80 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLN----PSVEFKFPTPL------GIKP---RLGDILEEHI 47
           + A D+GVPQ R+R++I          S     P P       G  P       + E+  
Sbjct: 164 VNAKDYGVPQNRKRVFIYGLRQDLDTDSNHVFPPEPTHFSATSGKHPHWVTASSVFEKIP 223

Query: 48  DDKSTISNKLWEGHQKRKEN 67
            +     ++ W+ + K K  
Sbjct: 224 KELY---DQYWDKYFKIKTK 240


>gi|326566077|gb|EGE16234.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC1]
          Length = 354

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF-KFPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           + A  +GV Q R R+ I+       +  K+P PL  +  L D  +  I  K  I + LW
Sbjct: 179 LNASHYGVAQNRVRVIIVGIRKDIDKKMKYPKPLFGE--LSDSKKPVITSKQAI-DDLW 234


>gi|209525887|ref|ZP_03274422.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493696|gb|EDZ94016.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 406

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG-DILEEHIDDKSTISNK 56
              D+GVPQ RER+ I+        F F   +   P  G D L  ++  K  + + 
Sbjct: 160 NFADYGVPQYRERVLIVGVR-MDTGFNF---IHPSPEYGSDRLYPYLTAKQALKDV 211


>gi|186684463|ref|YP_001867659.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594706|gb|AAK68641.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
           73102]
 gi|186466915|gb|ACC82716.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 413

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A ++GVPQ RER+ +I F N  ++
Sbjct: 172 INAIEYGVPQDRERIILIGFRNNFIK 197


>gi|308184574|ref|YP_003928707.1| site-specific DNA methylase [Helicobacter pylori SJM180]
 gi|308060494|gb|ADO02390.1| site-specific DNA methylase [Helicobacter pylori SJM180]
          Length = 405

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           +KA D+GVPQ RER+ II 
Sbjct: 148 LKASDYGVPQHRERVIIIG 166


>gi|163761361|ref|ZP_02168435.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
           phototrophica DFL-43]
 gi|162281356|gb|EDQ31653.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
           phototrophica DFL-43]
          Length = 376

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPT 31
           + A D+G PQRR+R++I+       +  F++P 
Sbjct: 160 LDARDYGTPQRRQRVFILGIRRDVSTDGFEWPP 192


>gi|288801979|ref|ZP_06407420.1| modification methylase HaeIII (Cytosine-specific methyltransferase
           HaeIII) [Prevotella melaninogenica D18]
 gi|288335414|gb|EFC73848.1| modification methylase HaeIII (Cytosine-specific methyltransferase
           HaeIII) [Prevotella melaninogenica D18]
          Length = 336

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGD 41
           + A DF VP+ R R++ I F       ++++P P   KP L +
Sbjct: 144 LNANDFDVPEDRNRVFYIGFRKDLHINDYEYPLPQKHKPTLRE 186


>gi|239982029|ref|ZP_04704553.1| DNA modification methylase [Streptomyces albus J1074]
 gi|291453880|ref|ZP_06593270.1| C-5 cytosine-specific DNA methylase [Streptomyces albus J1074]
 gi|291356829|gb|EFE83731.1| C-5 cytosine-specific DNA methylase [Streptomyces albus J1074]
          Length = 409

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQ R R  ++         F +P P      + + LEE
Sbjct: 183 LHAQDYGVPQLRPRAILVAIRKDQYRGFDWPAPRKKLRTVAEALEE 228


>gi|46580156|ref|YP_010964.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449573|gb|AAS96223.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233853|gb|ADP86707.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+GVPQ R+R++I+ 
Sbjct: 168 LNARDYGVPQNRKRVFILG 186


>gi|283956744|ref|ZP_06374220.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791719|gb|EFC30512.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 330

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           +   D+ + Q R R++I+  +  +  F FP     +  +  ++++
Sbjct: 155 LNTKDYSIAQNRSRIFIVGTIKKN-SFIFPKKENSQISIKKVIDD 198


>gi|227503804|ref|ZP_03933853.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           striatum ATCC 6940]
 gi|227199628|gb|EEI79676.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           striatum ATCC 6940]
          Length = 455

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDIL 43
           ++A D+GVPQ R R  ++   N     F +P  +     +G  L
Sbjct: 264 LQAADYGVPQLRPRFILVALKNEFANYFAWPKVVKSHTPVGTAL 307


>gi|212694208|ref|ZP_03302336.1| hypothetical protein BACDOR_03734 [Bacteroides dorei DSM 17855]
 gi|212663274|gb|EEB23848.1| hypothetical protein BACDOR_03734 [Bacteroides dorei DSM 17855]
          Length = 370

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + A D+ VPQ RER++++      
Sbjct: 155 LNATDYNVPQARERIFVVGIRGDE 178


>gi|320009547|gb|ADW04397.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 431

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE-FKFPTPL-GIKPRLGDIL 43
           A DFGVPQ R R  ++         F +P PL G +P++G+ L
Sbjct: 154 AADFGVPQLRPRFVLVALQREYAPYFSWPKPLEGERPKVGETL 196


>gi|200388503|ref|ZP_03215115.1| modification methylase HaeIII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605601|gb|EDZ04146.1| modification methylase HaeIII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 361

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIK 36
           + A  +GVPQ R+RL+II   N   + F+FP     K
Sbjct: 152 VNARAYGVPQSRKRLFIIGVRNDLGQCFEFPAETHGK 188


>gi|240117500|ref|ZP_04731562.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria gonorrhoeae
           PID1]
 gi|268603200|ref|ZP_06137367.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
 gi|268587331|gb|EEZ52007.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
          Length = 374

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F+ P P   + 
Sbjct: 160 NFTEFGVPQFRERVLIVGVRLDTGFDFRHPEPTHNET 196


>gi|187923153|ref|YP_001894795.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714347|gb|ACD15571.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 317

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDI 42
           M A DFGV Q R+R+ I+       VE+ FP     +    D+
Sbjct: 144 MNAQDFGVAQERKRIIIVGIRKDLGVEYAFPYATHGEHGEKDL 186


>gi|289167785|ref|YP_003446054.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907352|emb|CBJ22189.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 351

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ R+R+  +   N   EF++P  LG 
Sbjct: 152 LLASDYGVPQNRKRVIFVGTRND--EFEYPEALGT 184


>gi|312873586|ref|ZP_07733633.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
 gi|311090839|gb|EFQ49236.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
          Length = 487

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST-ISNKLWE 59
           + + DF + Q R R+YII   +  V+ K          L DI++  ++   T  + KL  
Sbjct: 216 LNSKDFNLAQSRNRIYIIGLRSGKVK-KLEGFEKKTSVLKDIIDSRVEAHKTDFTKKLLS 274

Query: 60  G-----HQKRKENNKIAG 72
                    +   +K  G
Sbjct: 275 HYSVDELYGKAIKDKRGG 292


>gi|168821212|ref|ZP_02833212.1| modification methylase HaeIII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205342142|gb|EDZ28906.1| modification methylase HaeIII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320088731|emb|CBY98489.1| C-5 cytosine-specific DNA methylase family protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 361

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           + A  +GVPQ R+RL+II   N     F+FP     K
Sbjct: 152 VNARAYGVPQSRKRLFIIGVRNDLGQSFEFPAETHGK 188


>gi|269129048|ref|YP_003302418.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268314006|gb|ACZ00381.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM 43183]
          Length = 418

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPR-LGDILEEHIDDK 50
           ++A D+GV Q R R  ++         F +P P   +P+ +GD+L + +  +
Sbjct: 148 LQASDYGVSQLRPRFVLVAMRPEDFSYFHWPEPGKKQPKTVGDLLHDQMASR 199


>gi|120537007|ref|YP_957065.1| C-5 cytosine-specific DNA methylase [Marinobacter aquaeolei VT8]
 gi|120326841|gb|ABM21150.1| C-5 cytosine-specific DNA methylase [Marinobacter aquaeolei VT8]
          Length = 467

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPR---LGDILEE--HIDDKST 52
           +  CDFG  + R+R  +I       +   F       ++ +   L D+LE     DD+ T
Sbjct: 276 LNGCDFGALENRDRAVVIAMSRDLAKAGMFNLADIKPLRVKEEKLADVLEPISEDDDRWT 335

Query: 53  ISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARY 94
           I        +++   +   G GF   L+    +  NT++  Y
Sbjct: 336 IH----TYLEEKALRDAKKGSGFQRQLYTGEESYINTVTRGY 373


>gi|126659133|ref|ZP_01730272.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
           CCY0110]
 gi|126619540|gb|EAZ90270.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
           CCY0110]
          Length = 346

 Score = 44.5 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGH 61
              D+GVPQ RER+ II      + FK+  P                D+   S +  +G 
Sbjct: 134 NFADYGVPQLRERVLIIGIRKD-INFKYRKPFPTHK----------PDEYVTSEEALQGV 182

Query: 62  QK--RKENNK 69
           +K      ++
Sbjct: 183 KKIPYNNEHQ 192


>gi|240047747|ref|YP_002961135.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae
          HRC/581]
 gi|239985319|emb|CAT05332.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae]
          Length = 211

 Score = 44.5 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE-EHIDDKSTISNKLWE 59
          + + DFG  Q R+R++++ +L    +F++P  +     L  IL+  H+ ++  +++K+++
Sbjct: 35 LNSADFGSSQNRQRVFMVSWLTNK-KFEWPATIKHNNNLKKILDLTHLPNEENLASKIFK 93

Query: 60 G 60
           
Sbjct: 94 Y 94


>gi|209525305|ref|ZP_03273847.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494320|gb|EDZ94633.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 342

 Score = 44.5 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 24/104 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEEH-----IDDKSTI 53
           + A ++GVPQ+RERL+++ +      + +P    L +    GD + +      I  K  +
Sbjct: 162 INAVNYGVPQKRERLFVVAY---QTAWHWPEAETLAMPYTAGDAIYDTASTIPIGAKF-L 217

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSAT----TNTLSAR 93
           +  + E   + +  +K                       TL+ R
Sbjct: 218 TPSMLEYIGRYEAKSKC---------VKPREIYLDIPCRTLTCR 252


>gi|218441171|ref|YP_002379500.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173899|gb|ACK72632.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 415

 Score = 44.5 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           + A ++GVPQ R+RL+++         K+P  +  K  
Sbjct: 161 LNAANYGVPQNRKRLFLLGGKKNLPPLKYPEAISDKKT 198


>gi|269986305|gb|EEZ92611.1| DNA-cytosine methyltransferase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 349

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
            A ++GVPQ R+R+ I+ +    + F F  P    
Sbjct: 145 DARNYGVPQERKRVIIVGYRKD-IGFSFLPPEPTH 178


>gi|254225219|ref|ZP_04918832.1| C-5 cytosine-specific DNA methylase superfamily [Vibrio cholerae
           V51]
 gi|125622318|gb|EAZ50639.1| C-5 cytosine-specific DNA methylase superfamily [Vibrio cholerae
           V51]
          Length = 303

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 16/80 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLN----PSVEFKFPTPL------GIKP---RLGDILEEHI 47
           + A D+GVPQ R+R++I          S     P P       G  P       + E+  
Sbjct: 74  VNAKDYGVPQNRKRVFIYGLRQDLDTDSNHVFPPEPTHFSATSGKHPHWVTASSVFEKIP 133

Query: 48  DDKSTISNKLWEGHQKRKEN 67
            +     ++ W+ + K K  
Sbjct: 134 KELY---DQYWDKYFKIKTK 150


>gi|188581100|ref|YP_001924545.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
 gi|179344598|gb|ACB80010.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
          Length = 446

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           + A DFGVPQ RERL ++           P P+   P 
Sbjct: 156 LDAADFGVPQHRERLILLGARRG-----LPLPVYPLPT 188


>gi|75906326|ref|YP_320622.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75700051|gb|ABA19727.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 431

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A  +GVPQ RERL++I         K+P P+   
Sbjct: 168 LNAAHYGVPQARERLFLIGAREDVKLPKYPKPITKP 203


>gi|149373126|ref|ZP_01892014.1| DcmB [unidentified eubacterium SCB49]
 gi|149354274|gb|EDM42843.1| DcmB [unidentified eubacterium SCB49]
          Length = 349

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + A D+ VPQ R+R++ I      + FK+  P    P++   LE+ I D
Sbjct: 145 LNASDYNVPQDRKRVFFIGIRKD-LNFKYQFPTETFPKIP--LEDVISD 190


>gi|298504551|gb|ADI83274.1| DNA cytosine methyltransferase [Geobacter sulfurreducens KN400]
          Length = 428

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 1   MKACDFGVPQRRERLYIID--FLNPSVEFKFPTPLGIKPRLGDI-LEEHIDDKSTISNKL 57
           + A D+GVPQ R R +II   F NP+  F  P     KP  G         D  T +  +
Sbjct: 178 LCAADYGVPQIRWRAFIIGCSFTNPAAVFP-PKKTNFKPNNGYRKAFSEEFDSYTENPHI 236

Query: 58  WEGHQK 63
           W+  + 
Sbjct: 237 WKTVRD 242


>gi|17229768|ref|NP_486316.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17131367|dbj|BAB73975.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 431

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A  +GVPQ RERL++I         K+P P+   
Sbjct: 168 LNAAHYGVPQARERLFLIGAREDVKLPKYPKPITKP 203


>gi|78776322|ref|YP_392637.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78496862|gb|ABB43402.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 395

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A D+GVPQ RER++ I      + 
Sbjct: 197 LNAADYGVPQSRERVFFIGIRRDLIN 222


>gi|210614083|ref|ZP_03290039.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
 gi|210150861|gb|EEA81869.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
          Length = 244

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + + DFGVPQ R+R+Y+I +L+ 
Sbjct: 140 LNSKDFGVPQSRKRVYLIGYLDE 162


>gi|302551692|ref|ZP_07304034.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
           40736]
 gi|302469310|gb|EFL32403.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
           40736]
          Length = 415

 Score = 44.5 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GVPQ R R  ++   +   + F +P        +G  L++ +  K  +  + W 
Sbjct: 144 LHANNYGVPQLRPRFVLVAMRHEDAQWFNWPEEKPTTQTVGTALQDMMAAKGWLGAEAWA 203


>gi|315639354|ref|ZP_07894516.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
           JV21]
 gi|315480680|gb|EFU71322.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
           JV21]
          Length = 320

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
           + A  + VPQ R+R+ II        E +FP PL I+P+
Sbjct: 147 LNANAYAVPQNRKRVIIIGRRKDIKREVEFPKPLNIEPK 185


>gi|325270471|ref|ZP_08137073.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
 gi|324987194|gb|EGC19175.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
          Length = 398

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP-----RLGDILEEHIDD 49
           + A D+GVPQ R R   +  L+ + EF FP+P    P      + D+ E+ + +
Sbjct: 202 LLASDYGVPQNRRRAIFVGMLDGT-EFVFPSPTLETPVTCKEAISDLPEDSLPE 254


>gi|298492225|ref|YP_003722402.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
 gi|298234143|gb|ADI65279.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
          Length = 434

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A ++GVPQ RERL+++       + K P     
Sbjct: 157 LNAANYGVPQNRERLFLLGCRQ---DLKLPNHPDK 188


>gi|77465763|ref|YP_355266.1| cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77390181|gb|ABA81365.1| Cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 443

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A D+G PQ R+RL++I           P     +    D
Sbjct: 154 LDAADYGTPQHRQRLFLIGAKRGE---TLPEIPPPQTNAAD 191


>gi|310830454|ref|YP_003965555.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
 gi|309249921|gb|ADO59487.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
          Length = 267

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
          +   D+GVPQ R+R+ ++         F+FP P+ ++ R
Sbjct: 23 LNCWDYGVPQLRKRVIVVGIRKDLDKHFEFPPPVPLEER 61


>gi|195873685|ref|ZP_02698511.2| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632788|gb|EDX51242.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 382

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + + D+G+PQ RERL+++ F      F F  
Sbjct: 163 LNSLDYGIPQDRERLFVVGFKK---SFIFDK 190


>gi|144900416|emb|CAM77280.1| modification methylase MthTI [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 356

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + AC +GVPQ RER +II +   
Sbjct: 161 LNACHYGVPQSRERAFIIGYRRD 183


>gi|40850587|gb|AAR96017.1| M2.BsaI [Geobacillus stearothermophilus]
          Length = 381

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL---GIKPRLGDILEEHIDDKSTISN 55
           + + D+GVPQRR R+ II     +   + P P+     +  L D L   I  K  +S+
Sbjct: 278 LNSVDYGVPQRRNRVVIIGDSTGTKNSEPPIPITSLKGEKTLFDALSSAISVKEALSD 335


>gi|238751088|ref|ZP_04612584.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
 gi|238710778|gb|EEQ03000.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
          Length = 362

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFP 30
           + A ++GVPQ R+RL+II       + F+FP
Sbjct: 152 VNAKEYGVPQSRKRLFIIGVRKDLDQYFEFP 182


>gi|218441855|ref|YP_002380184.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218174583|gb|ACK73316.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 342

 Score = 44.1 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR----LGDILEEHIDDKSTISNK 56
           + A  +  PQ RER++II       +F FP  L         LGD+          ++  
Sbjct: 167 LNASWYETPQNRERVFIIG---HRGKFTFPCRLSNSITAGEALGDLAISIPPGAKFLTES 223

Query: 57  LWEGHQKRKENNKIA 71
           + +   K ++ +K  
Sbjct: 224 MNQYVAKYEKASKCK 238


>gi|311977245|gb|ADQ20501.1| M2.BfuAI [Lysinibacillus fusiformis]
          Length = 342

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           +   D+GVPQ RER++II       E  FP P   +
Sbjct: 156 LNMADYGVPQLRERVFIIG-NRLGHEVNFPLPTHSE 190


>gi|226349837|ref|YP_002776950.1| modification methylase [Rhodococcus opacus B4]
 gi|226245752|dbj|BAH47019.1| modification methylase [Rhodococcus opacus B4]
          Length = 428

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           ++A D+GVPQ R R  ++         F +P     +  +G  L++
Sbjct: 158 LQASDYGVPQLRPRFVLVALRQEDAAYFHWPEKTPTQDTVGSALKD 203


>gi|167009507|ref|ZP_02274438.1| modification methylase HaeIII [Francisella tularensis subsp.
          holarctica FSC200]
          Length = 111

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGD 41
          + + DF VPQ R+R++ +         F F T    K  L D
Sbjct: 29 LNSSDFKVPQDRQRVFFVGIRKDLGFNFNFSTNTYPKITLKD 70


>gi|75906954|ref|YP_321250.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75700679|gb|ABA20355.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 385

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A ++GVPQ RER+ ++ F     +  F        +L + L           +K++  
Sbjct: 172 INAIEYGVPQNRERIILLGFSKKFFQ-DFWGINSHNQKLLEFLFPWESKVLYPKDKVFAY 230


>gi|148988375|ref|ZP_01819822.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926056|gb|EDK77130.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 351

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A D+GVPQ R+R+  +   N    F++P  LG 
Sbjct: 152 LLASDYGVPQNRKRVIFVGTRND--GFEYPEALGT 184


>gi|308229532|gb|ADO24181.1| M.ApaI [Acetobacter pasteurianus subsp. pasteurianus]
          Length = 349

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPL-GIKPRLGDILEEHIDDK 50
           A D+GVPQ+R RL I+     +  F FP P  G    +  +    + DK
Sbjct: 145 AADYGVPQKRRRLIIVGMKKGT--FWFPKPTHGPDTNIPHVASGRVIDK 191


>gi|255280633|ref|ZP_05345188.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
 gi|255269098|gb|EET62303.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
          Length = 378

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ R R  +I       +  FP P   K
Sbjct: 151 VNAADYGVPQARPRFVLIGIRGFDKKITFPQPTHGK 186


>gi|119511510|ref|ZP_01630619.1| type II DNA modification enzyme (methyltransferase) [Nodularia
           spumigena CCY9414]
 gi|119463821|gb|EAW44749.1| type II DNA modification enzyme (methyltransferase) [Nodularia
           spumigena CCY9414]
          Length = 371

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG--IKPRLGDILEEH-----IDDKSTI 53
           + A  +GVPQ+RERL+ +        +++P           G+ L +       + K  +
Sbjct: 162 LNAAHYGVPQKRERLFCVA---HKGSWQWPEKTHFYSPYTAGEALGKSAYLAPPNSK-IL 217

Query: 54  SNKLWEGHQKR 64
           +  + E  +K 
Sbjct: 218 TPSMDEYIKKY 228


>gi|262283530|ref|ZP_06061296.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
           2_1_36FAA]
 gi|262261021|gb|EEY79721.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
           2_1_36FAA]
          Length = 411

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  FGVPQ R+R++++ 
Sbjct: 147 LNSSHFGVPQNRQRVFLVG 165


>gi|256397638|ref|YP_003119202.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
 gi|256363864|gb|ACU77361.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
          Length = 389

 Score = 44.1 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A  FGVPQ+RERL ++      V+ ++P P  
Sbjct: 157 LNAAHFGVPQKRERLILLG-AQQGVKLRWPRPTH 189


>gi|17232307|ref|NP_488855.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17133952|dbj|BAB76514.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 414

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A ++G+PQ RER++I+ 
Sbjct: 159 LNAAEYGIPQIRERIFIVG 177


>gi|332366902|gb|EGJ44643.1| modification methylase BepI [Streptococcus sanguinis SK1059]
          Length = 197

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFK---FPTP--LGIKPRLGDILEE 45
          + A D+GVPQ R R+ I+   N   + +   +P P  +G      D LE+
Sbjct: 16 LDAADYGVPQSRRRVIIVGIRNDIGDNEKIYYPEPTHVGNPRTAFDALED 65


>gi|283783021|ref|YP_003373775.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|283441534|gb|ADB14000.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
          Length = 357

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DFGVPQ R+R  II  +N       P+ L  K  + D + +
Sbjct: 150 LNAADFGVPQNRKRAVIIGKMNGVAP-SLPSSLNEKVTIWDAISD 193


>gi|160931938|ref|ZP_02079330.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
 gi|156868980|gb|EDO62352.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
          Length = 379

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + + DFGVPQ R+R+Y+I +L+ 
Sbjct: 150 LNSKDFGVPQSRKRVYLIGYLDK 172


>gi|325678040|ref|ZP_08157677.1| putative modification methylase BspRI [Ruminococcus albus 8]
 gi|324110257|gb|EGC04436.1| putative modification methylase BspRI [Ruminococcus albus 8]
          Length = 358

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV----EFKFPTPLG 34
           + ACD+GVPQ R+R++ +      +    +F FPTP  
Sbjct: 150 LTACDYGVPQARKRVFFVGVNKSKIKHTEKFVFPTPTH 187


>gi|154497795|ref|ZP_02036173.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
           29799]
 gi|150273293|gb|EDN00438.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
           29799]
          Length = 222

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDIL 43
           + +  FGVPQ R+R+++I +L+P       P P G    L  +L
Sbjct: 141 LNSKHFGVPQSRKRVFLICYLDPRCAGKILPVPGGHGKALVQLL 184


>gi|57506146|ref|ZP_00372067.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
           upsaliensis RM3195]
 gi|57015541|gb|EAL52334.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
           upsaliensis RM3195]
          Length = 316

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRL 39
           + A  + VPQ R+R+ II        E  FP PL I+P++
Sbjct: 143 LNANAYAVPQNRKRVIIIGRRKDIKREIDFPKPLNIEPKI 182


>gi|254285523|ref|ZP_04960487.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
 gi|150424385|gb|EDN16322.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
          Length = 417

 Score = 43.7 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGD 41
           +KA  + VPQ+RERL ++         V+F +P+P      L D
Sbjct: 222 LKAIFYKVPQKRERLILVGIRKDLAQKVKFHWPSPYKRVMTLRD 265


>gi|168207074|ref|ZP_02633079.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|170661488|gb|EDT14171.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           RER++I+       +  F+F         L  I E  +D+K    +      + 
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKEGNDNIVTLESITESFVDEKYYCKDN--SYLKN 210


>gi|294788934|ref|ZP_06754174.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
 gi|294483036|gb|EFG30723.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
          Length = 328

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + A DFGVPQ+R R+  I     + +  FP 
Sbjct: 153 LNAVDFGVPQQRSRIVFIG-RRDNGKILFPK 182


>gi|158320926|ref|YP_001513433.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141125|gb|ABW19437.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 423

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP--TPLGIKPRLGDILEE-------HIDDKS 51
           M A DFGV Q R+R+ II +    +EF +P       +  + ++LE+        I DK 
Sbjct: 205 MDAKDFGVLQSRKRVIIIGWRKD-LEFDYPIFESDDKEFTVNNLLEDLPKINSGEIYDKF 263

Query: 52  TISNKLWEGHQK 63
               K+ +  Q 
Sbjct: 264 RYRKKINKYLQN 275


>gi|319638577|ref|ZP_07993339.1| modification methylase NgoFVII [Neisseria mucosa C102]
 gi|317400326|gb|EFV80985.1| modification methylase NgoFVII [Neisseria mucosa C102]
          Length = 374

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F  P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFHHPEPTHNET 196


>gi|291299135|ref|YP_003510413.1| DNA-cytosine methyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290568355|gb|ADD41320.1| DNA-cytosine methyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 437

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A DFGVPQ R+R+ I+ F + 
Sbjct: 199 VNAADFGVPQIRQRVIIVAFRSD 221


>gi|298253558|ref|ZP_06977348.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
 gi|297532325|gb|EFH71213.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
          Length = 317

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A DFGVPQ R+R  II  +N       P+ L  K  + D + +
Sbjct: 110 LNAADFGVPQNRKRAVIIGKMNGVAP-SLPSSLNEKVTIWDAISD 153


>gi|294787738|ref|ZP_06752982.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
 gi|294484031|gb|EFG31714.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
          Length = 331

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPT 31
           + A ++GV Q R+R++ I F    +++F+FP 
Sbjct: 144 VNAKNYGVAQERKRVFYIGFRKDLNIKFQFPQ 175


>gi|160939240|ref|ZP_02086591.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438203|gb|EDP15963.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
           BAA-613]
          Length = 366

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDIL 43
           + + D+GVPQ RER+YII      S    FP     K     I+
Sbjct: 148 VNSKDYGVPQSRERVYIIGDLTGRSTGKIFPLRSPGKTAPAQII 191


>gi|225076231|ref|ZP_03719430.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
           NRL30031/H210]
 gi|224952355|gb|EEG33564.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
           NRL30031/H210]
          Length = 374

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKP 37
              +FGVPQ RER+ I+     +  +F  P P   + 
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFHHPEPTHNET 196


>gi|77412067|ref|ZP_00788393.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           CJB111]
 gi|77161872|gb|EAO72857.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
           CJB111]
          Length = 394

 Score = 43.7 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y + 
Sbjct: 128 NSKDYGVPQNRERIYTLG 145


>gi|229126345|ref|ZP_04255362.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228657116|gb|EEL12937.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 363

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL 33
           +KA D+GVPQ+R R+  + F     V +KFP P 
Sbjct: 153 LKASDYGVPQQRYRVIFVAFRKDLDVNYKFPLPT 186


>gi|168210881|ref|ZP_02636506.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|209947599|ref|YP_002291106.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
 gi|170711042|gb|EDT23224.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|209910390|dbj|BAG75479.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
          Length = 339

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR--KE 66
           RER++I+       +  F+F         L  I E  +D+K    +    +    +  K 
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKEGNDNLVTLESITESFVDEKYYCKDNSYLKSFLNKVNKR 218

Query: 67  NNKIA 71
             K  
Sbjct: 219 ICKDK 223


>gi|167046802|ref|YP_001661472.1| DNA methyltransferase [Acinetobacter venetianus]
 gi|83833711|gb|ABC47668.1| DNA methyltransferase [Acinetobacter venetianus]
          Length = 737

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTP 32
           +GVPQ+RER++++       +F FP P
Sbjct: 160 YGVPQKRERVFLMGTRLQHKKFNFPKP 186



 Score = 33.7 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 18/63 (28%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A D+GVPQ R+R  +I       +   P P                 K   +   W+ 
Sbjct: 528 INAADYGVPQLRKRFLLIG---TKTDLVIPFPK---------------PKYFSTPDSWQL 569

Query: 61  HQK 63
             +
Sbjct: 570 PYR 572


>gi|76788592|ref|YP_329366.1| prophage LambdaSa04, methyltransferase C-5 [Streptococcus
           agalactiae A909]
 gi|76563649|gb|ABA46233.1| prophage LambdaSa04, methyltransferase, C-5 cytosine-specific
           family [Streptococcus agalactiae A909]
          Length = 417

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y + 
Sbjct: 151 NSKDYGVPQNRERIYTLG 168


>gi|30019096|ref|NP_830727.1| Type II restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
 gi|29894639|gb|AAP07928.1| Type II restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
          Length = 373

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL 33
           +KA D+GVPQ+R R+  + F     V +KFP P 
Sbjct: 163 LKASDYGVPQQRYRVIFVAFRKDLDVNYKFPLPT 196


>gi|229060735|ref|ZP_04198090.1| Modification methylase Eco47II [Bacillus cereus AH603]
 gi|228718382|gb|EEL70014.1| Modification methylase Eco47II [Bacillus cereus AH603]
          Length = 198

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG--IKPR--LGDILEEH 46
          + A  F V Q R+R++I+   N  +V F FPT +   + PR  +GD+    
Sbjct: 35 LDAVMFEVAQHRKRVFIVGVRNDMNVSFNFPTGISAVVTPRDAIGDLPSPD 85


>gi|313575370|emb|CBR26899.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 419

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y + 
Sbjct: 151 NSKDYGVPQNRERIYTLG 168


>gi|227112465|ref|ZP_03826121.1| putative C-5 cytosine-specific DNA methylase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 390

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIK 36
           + A D+GVPQ R+R++I        +   KFP      
Sbjct: 164 INAVDYGVPQNRKRVFIFGIHEDLNNSTIKFPPKPTHH 201


>gi|323703857|ref|ZP_08115492.1| DNA-cytosine methyltransferase [Desulfotomaculum nigrificans DSM
           574]
 gi|323531175|gb|EGB21079.1| DNA-cytosine methyltransferase [Desulfotomaculum nigrificans DSM
           574]
          Length = 409

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIK 36
           + A D+GVPQ+R R++II   +     F FPT     
Sbjct: 186 LCAADYGVPQKRYRIFIIGRRDGKLPGFPFPTHANNP 222


>gi|260221505|emb|CBA30136.1| hypothetical protein Csp_C22040 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 191

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
          M A +FG PQ R RL++I  L        P P   +    DIL+     K T
Sbjct: 1  MNAAEFGAPQSRVRLFLIGGLGLPPPEIRPEPSVKRMTARDILDPDDRWKFT 52


>gi|238917713|ref|YP_002931230.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238873073|gb|ACR72783.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 477

 Score = 43.7 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 1   MKACDFGVPQRRER-LYI 17
           + A +FGVPQ RER +YI
Sbjct: 247 LNAKNFGVPQNRERLIYI 264


>gi|262113733|emb|CAR95400.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 417

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y + 
Sbjct: 151 NSKDYGVPQNRERIYTLG 168


>gi|168206039|ref|ZP_02632044.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|170662518|gb|EDT15201.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
           RER++I+       +  F+F         L  I E  +D+K    +    +    +
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKEGNNNLVTLESITESFVDEKYYCKDNSYLKSFLNK 214


>gi|319757808|gb|ADV69750.1| hypothetical protein SSUJS14_0659 [Streptococcus suis JS14]
          Length = 424

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y + 
Sbjct: 151 NSKDYGVPQNRERIYTLG 168


>gi|89513784|gb|ABD74727.1| site-specific DNA-methyltransferase [Ensifer adhaerens]
          Length = 137

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF-KFPTPLG 34
           + A  FGVPQ RERL+I+   +   +  +FP P  
Sbjct: 71  LNAAYFGVPQVRERLFIVALADALDQVPEFPDPTH 105


>gi|254368946|ref|ZP_04984959.1| modification methylase FnuDI [Francisella tularensis subsp.
          holarctica FSC022]
 gi|157121867|gb|EDO66037.1| modification methylase FnuDI [Francisella tularensis subsp.
          holarctica FSC022]
          Length = 220

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGD 41
          + + DF VPQ R+R++ +         F F T    K  L D
Sbjct: 29 LNSSDFKVPQDRQRVFFVGIRKDLGFNFNFSTNTYPKITLKD 70


>gi|417325|sp|P15840|MTSI_SPISQ RecName: Full=CPG DNA methylase; AltName: Full=Cytosine-specific
           methyltransferase SssI; Short=M.SssI
 gi|66468|pir||CTYMCS site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) SssI - Spiroplasma sp. (strain MQ1)
 gi|47553|emb|CAA35058.1| unnamed protein product [Spiroplasma sp.]
          Length = 386

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG  Q R R+++I  LN  VE   P        +  +L + + +K  + N L + 
Sbjct: 219 LNAADFGSSQARRRVFMISTLNEFVE--LPKGDKKPKSIKKVLNKIVSEKDIL-NNLLKY 275

Query: 61  HQKRKENNKIAGKG---FGYGLFF--------ENSATTNTLS---ARYY-KDGSEI 101
           +    +  K         GY  F         E +  T T S   +R   KDGS I
Sbjct: 276 NLTEFKKTKSNINKASLIGYSKFNSEGYVYDPEFTGPTLTASGANSRIKIKDGSNI 331


>gi|300866085|ref|ZP_07110814.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300335911|emb|CBN55972.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 436

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  +GVPQ+RERL+++          +P      P         + D    S  +W+ 
Sbjct: 161 LNAAQYGVPQKRERLFLLGCRQDLTLPTYPQAF-THPASRKTSHSELPD----SPNVWDA 215

Query: 61  HQK 63
            + 
Sbjct: 216 LRD 218


>gi|161869727|ref|YP_001598894.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
           meningitidis 053442]
 gi|161595280|gb|ABX72940.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
           meningitidis 053442]
          Length = 374

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
              +FGVPQ RER+ I+     +  +F  P P   +     +L  ++     IS+
Sbjct: 160 NFAEFGVPQFRERVLIVGVRLDTGFDFHHPEPTHGENTDYGLL-PYVTAGQAISD 213


>gi|168206682|ref|ZP_02632687.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|190015777|ref|YP_001967782.1| probable site-specific DNA-methyltransferase [Clostridium
           perfringens]
 gi|86450199|gb|ABC96308.1| probable site-specific DNA-methyltransferase [Clostridium
           perfringens]
 gi|170661882|gb|EDT14565.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
           RER++I+       +  F+F         L  I E  +D+K    +    +    +
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKEGNNNLVTLESITESFVDEKYYCKDNSYLKSFLNK 214


>gi|1808696|gb|AAC00045.1| putative type II 5-cytosoine methyltransferase [Corynebacterium
           glutamicum]
          Length = 363

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG 34
              ++GVPQ RER+ I+     +  +FK P P  
Sbjct: 152 NFAEYGVPQFRERVLIVGIRRDTGFDFKHPAPTH 185


>gi|218245850|ref|YP_002371221.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058898|ref|YP_003136786.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218166328|gb|ACK65065.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256589064|gb|ACU99950.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 418

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A ++GVPQ RERL+++ 
Sbjct: 157 LNAANYGVPQNRERLFLLG 175


>gi|319645695|ref|ZP_07999926.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
 gi|317392242|gb|EFV73038.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
          Length = 327

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILEEHIDD 49
           + A DFGVPQRRER++ I  L     F F + L  K    + + LE ++  
Sbjct: 147 LNAMDFGVPQRRERVFTISILGNKA-FNF-SKLNRKTAQHIKEFLEGNVTA 195


>gi|254883949|ref|ZP_05256659.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
 gi|254836742|gb|EET17051.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
          Length = 420

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 14/76 (18%)

Query: 6   FGV--------PQRRERLYIIDFLNPSVEF------KFPTPLGIKPRLGDILEEHIDDKS 51
           FGV         Q R R+Y  +     V          P P   K  L  I+EE  D K 
Sbjct: 157 FGVHINSALVSAQNRARIYWTNIRTKKVGLFGELHADIPQPQDRKIFLRHIVEEEADKKY 216

Query: 52  TISNKLWEGHQKRKEN 67
            +S K+    ++  E 
Sbjct: 217 YLSEKMMGWLKRHGEK 232


>gi|192292294|ref|YP_001992899.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|192286043|gb|ACF02424.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 500

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG 34
           + A  +GVPQ RER+++I +        +FP P  
Sbjct: 185 LNAARYGVPQMRERMFLIAYRKELQQTVEFPKPTH 219


>gi|62390655|ref|YP_226057.1| modification methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324545|dbj|BAB99169.1| Site-specific DNA methylase or type II 5-cytosine methyltransferase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325993|emb|CAF20156.1| MODIFICATION METHYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 363

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG 34
              ++GVPQ RER+ I+     +  +FK P P  
Sbjct: 152 NFAEYGVPQFRERVLIVGIRRDTGFDFKHPAPTH 185


>gi|257877765|ref|ZP_05657418.1| cytosine specific DNA methyltransferase [Enterococcus casseliflavus
           EC20]
 gi|257811931|gb|EEV40751.1| cytosine specific DNA methyltransferase [Enterococcus casseliflavus
           EC20]
          Length = 380

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPT 31
           + A D+GVPQ R+R++ + F        F+FP 
Sbjct: 156 LLAADYGVPQMRKRMFFVGFRKDLNYDYFEFPK 188


>gi|9858807|gb|AAG01143.1|AF283660_1 BsrFI methylase [Geobacillus stearothermophilus]
          Length = 389

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---------FKFPTPLGI 35
           + A +FG+PQ R R++++ F    +E         F++PTP   
Sbjct: 174 LNALEFGIPQDRTRVFVVGFKKSIIEALQENNMDIFQWPTPTYP 217


>gi|310815203|ref|YP_003963167.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
 gi|308753938|gb|ADO41867.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
          Length = 437

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQ R+RL ++          +P  +  +P   D L +
Sbjct: 155 LNAADYGVPQDRQRLILMGAKKGRSLPDYPKAIAERPTCQDALAD 199


>gi|325298662|ref|YP_004258579.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
 gi|324318215|gb|ADY36106.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
          Length = 336

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGD 41
           + A D+ V + R+R++ I F       +FK+PTPL  KP L +
Sbjct: 144 LNANDYDVAEDRDRVFYIGFRKDLNIHDFKYPTPLKHKPTLRE 186


>gi|19552978|ref|NP_600980.1| site-specific DNA methylase or [Corynebacterium glutamicum ATCC
           13032]
          Length = 356

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG 34
              ++GVPQ RER+ I+     +  +FK P P  
Sbjct: 145 NFAEYGVPQFRERVLIVGIRRDTGFDFKHPAPTH 178


>gi|311897184|dbj|BAJ29592.1| putative modification methylase [Kitasatospora setae KM-6054]
          Length = 433

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----SVEFKFPTPLGIKPRL 39
           + A D+GVPQ R R+ I+ F         +  +   P   +  L
Sbjct: 201 VNAADYGVPQIRNRVIIVAFRRDLKVDIELFKELVKPTHSETAL 244


>gi|326789362|ref|YP_004307183.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326540126|gb|ADZ81985.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 415

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + A DFG+PQ+RER+Y++  L  +   K 
Sbjct: 213 LNAKDFGIPQKRERVYMLSVLVGNDALKL 241


>gi|332665156|ref|YP_004447944.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333970|gb|AEE51071.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 416

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A ++GVPQRRER  +I          FP P  +K
Sbjct: 193 LNAANYGVPQRRERFILIGMKGIKEP-AFPLPTHMK 227


>gi|50914489|ref|YP_060461.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50903563|gb|AAT87278.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y I 
Sbjct: 152 NSKDYGVPQNRERVYTIG 169


>gi|257466254|ref|ZP_05630565.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 353

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A ++GVPQ R+R + +  LN    F FP P+
Sbjct: 154 LYAPEYGVPQIRKRAFFVGLLNSKEGFTFPEPI 186


>gi|110799652|ref|YP_695464.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674299|gb|ABG83286.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
          Length = 446

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIK 36
           A D+GVPQ RER+++I       E  + +P     +
Sbjct: 187 AADYGVPQNRERVFLIGINKMYGENPYIYPEKTHGE 222


>gi|315917412|ref|ZP_07913652.1| cytosine specific DNA methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691287|gb|EFS28122.1| cytosine specific DNA methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 358

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A ++GVPQ R+R + +  LN    F FP P+
Sbjct: 159 LYAPEYGVPQIRKRAFFVGLLNSKEGFTFPEPI 191


>gi|86475982|dbj|BAE79156.1| putative cytosine methyltransferase [Clostridium perfringens]
          Length = 339

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
           RER++I+       +  F+F         L  I E  +D+K    +    +    +
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKKGNNNLVTLESITESFVDEKYYCKDNSYLKSFLNK 214


>gi|168211060|ref|ZP_02636685.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|170710923|gb|EDT23105.1| Dcm [Clostridium perfringens B str. ATCC 3626]
          Length = 339

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
           RER++I+       +  F+F         L  I E  +D+K    +    +    +
Sbjct: 159 RERVFIVSIRKDIDNGSFEFKKGNNNLVTLESITESFVDEKYYCKDNSYLKSFLNK 214


>gi|319779704|ref|YP_004130617.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109728|gb|ADU92474.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 339

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEH 46
           + + D+G+P  R R+Y+I       + EF+FP P+ +   L D L   
Sbjct: 152 LNSMDYGLPLNRLRVYMIAIRKDVNTREFEFPKPIPLTSYLEDYLLPD 199


>gi|329121769|ref|ZP_08250386.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327468239|gb|EGF13725.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 416

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + A D+G PQRR R +I  F N +  F +
Sbjct: 162 INAADYGYPQRRRRTFIFAFRNETKFFDY 190


>gi|40218563|gb|AAR83217.1| chromosome partitioning protein parB [Streptococcus pyogenes]
 gi|50261608|gb|AAT72376.1| methylase [Streptococcus pyogenes]
          Length = 388

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GVPQ RER+Y I 
Sbjct: 152 NSKDYGVPQNRERVYTIG 169


>gi|20147457|gb|AAM12503.1|AF416450_1 cytosine methyltransferase [Clostridium perfringens CPE str.
          F4969]
          Length = 182

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12 RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
          RER++I+       +  FKF         L  I E  +D+K    +    +    +
Sbjct: 2  RERVFIVSIRKDIDNGSFKFKEGNDNLVTLESITENFVDEKYYCKDNSYLKSFLNK 57


>gi|282897137|ref|ZP_06305139.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
 gi|281197789|gb|EFA72683.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
          Length = 435

 Score = 43.0 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A DFGV Q R RL ++ +     +  +P  L  K     
Sbjct: 164 LNAADFGVAQNRSRLILLGWRKDMPKPVYPETLFEKTTANS 204


>gi|296112182|ref|YP_003622593.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
 gi|294341994|emb|CAZ90422.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
          Length = 304

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + + D GVPQ RERL++I  L+     +   P        DI+E
Sbjct: 141 IDSADHGVPQHRERLFLICSLSKHP-LELDLPRRAYVPARDIIE 183


>gi|228474527|ref|ZP_04059258.1| site-specific DNA methylase [Staphylococcus hominis SK119]
 gi|228271190|gb|EEK12558.1| site-specific DNA methylase [Staphylococcus hominis SK119]
          Length = 414

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           + A D+GVPQ RER+ II      VE  FP    + P
Sbjct: 149 LNAADYGVPQARERVIIIG-NRIGVENPFPVISHVAP 184


>gi|269797252|ref|YP_003311152.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
 gi|269093881|gb|ACZ23872.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
          Length = 423

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 1   MKACDFGVPQRRERLYIID------FLNPSVEFKF------PTPLGIKPRLGDILEEHID 48
           + A DFGV Q RER+ I+       F     ++ +      P    +   L +I      
Sbjct: 196 INANDFGVSQNRERVIIVGHRKDLLFNKSFFDYLYNYVEPSPKLKELFADLPNIRAGKSS 255

Query: 49  DKS 51
            K 
Sbjct: 256 KKY 258


>gi|254450593|ref|ZP_05064030.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
 gi|198264999|gb|EDY89269.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
          Length = 365

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIK 36
           + + D+GVPQRR+RL++I         F FPT    K
Sbjct: 144 INSQDYGVPQRRKRLFVIGVRRDLGGYFHFPTETHCK 180


>gi|1098476|gb|AAC37047.1| orf; homologous to Haemophilus parahaemolyticus hphIM(C) Accession
           Number M24625 [Neisseria meningitidis]
          Length = 276

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 195


>gi|238059022|ref|ZP_04603734.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237886458|gb|EEP75286.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 442

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + A DFGVPQ R+RL  +   +   E   P   G +  L   L  H   K  +
Sbjct: 145 LDAADFGVPQTRKRLVFVGLRSDLGE-TPPVFEGTQATLHLALVRHGKGKYAL 196


>gi|159897859|ref|YP_001544106.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890898|gb|ABX03978.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 415

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFL-----NPSV---EFKFPTPLGIKPRLGDILEE 45
           + A DFGVPQ R+R ++         +P++   +F  P        +   +E+
Sbjct: 194 LDAADFGVPQHRKRFFLFGIRTDLTTDPNIRLEKFINPYRTSTLTTVAQAIED 246


>gi|299820316|gb|ADJ54326.1| C5-cytosine specific methylase [archaeon enrichment culture clone
           1(2010)]
          Length = 396

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF-KFPTPLGIKPRLGDI---------LEEHIDDK 50
           + + D+GVPQ+R RL+ I       +    PTP   +  +  I         L E I D 
Sbjct: 147 LNSADYGVPQKRFRLFTIGIHRSLGKKPSLPTPTHSEKPVVTIFGTMPTWLTLREAIQDI 206

Query: 51  STI--SNKLWEGHQKRKENNKIAGKGFGYGLF---FENSATTNTLS 91
             I  +  L +   +R +  +   KG  +G             T+S
Sbjct: 207 MNIPPTTILRQEQVERIKRERENTKGIHWGKMEFPDNLDRPARTIS 252


>gi|30523050|gb|AAP31838.1| AsiSI methylase [Arthrobacter sp. S]
          Length = 390

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-PTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GVPQ R+RL +I   +   EF F P P       G +         T S+ LW+
Sbjct: 154 LNAADWGVPQARKRLILIAVRD-VAEFSFPPKPTHSGDPSGSL-----RPYRTASDALWD 207


>gi|295836816|ref|ZP_06823749.1| modification methylase NaeI [Streptomyces sp. SPB74]
 gi|295826219|gb|EDY44437.2| modification methylase NaeI [Streptomyces sp. SPB74]
          Length = 449

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR-LGDILEEHIDDKS 51
           + +  FGVPQ R R  ++ F        +F++P     +   + D+L E + ++ 
Sbjct: 195 LDSNKFGVPQLRPRAILVAFREDIARFEDFRWPVRSAEEAESVFDVLREEMRERY 249


>gi|94958344|gb|ABF47306.1| Dcm [Clostridium perfringens]
 gi|94958377|gb|ABF47337.1| Dcm [Clostridium perfringens]
          Length = 339

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKRKEN 67
           RER++I+       +  FKF         L  I E  +D+K    +    +    +   
Sbjct: 159 RERVFIVSIRKDIDNGSFKFKEGNDNLVTLESITENFVDEKYYCKDNSYLKSFLNKVNK 217


>gi|67922668|ref|ZP_00516173.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67855516|gb|EAM50770.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 282

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP------TPLGIKPRLGDILEEHIDD 49
           + A D+GVPQ R R+  +     + EF FP        +     + D+ EE + D
Sbjct: 153 LLASDYGVPQNRRRVIFVGV-PKNYEFNFPIGDFTENKITCSQAMNDLPEESMTD 206


>gi|300868191|ref|ZP_07112823.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300333815|emb|CBN58007.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 395

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ RER+  I +   S     P P   +
Sbjct: 192 LNAADYGVPQVRERVIFIGY-KGSDSVTLPLPTHSQ 226


>gi|307244197|ref|ZP_07526312.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492347|gb|EFM64385.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 534

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIK 36
           + A  +GVPQ R R+ ++ F     + F FP     +
Sbjct: 339 VNASSYGVPQNRIRVIVVAFRKDLNKMFIFPEEQSKE 375


>gi|238788388|ref|ZP_04632182.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC 33641]
 gi|238723634|gb|EEQ15280.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC 33641]
          Length = 380

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFL------NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           +   D+GVPQ R+R+  I         N    F  PTP    P     L   +  K  IS
Sbjct: 154 LNTADYGVPQTRKRIIAIGVKAELFDINQLPAFP-PTPTHCSPDKNSALPAWVTVKDAIS 212

Query: 55  N 55
           +
Sbjct: 213 D 213


>gi|86559571|ref|YP_473392.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
           str. F4969]
 gi|168215006|ref|ZP_02640631.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
           str. F4969]
 gi|86475843|dbj|BAE79019.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
 gi|94958361|gb|ABF47322.1| Dcm [Clostridium perfringens]
 gi|170713579|gb|EDT25761.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
           str. F4969]
          Length = 339

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKRKEN 67
           RER++I+       +  FKF         L  I E  +D+K    +    +    +   
Sbjct: 159 RERVFIVSIRKDIDNGSFKFKEGNDNLVTLESITENFVDEKYYCKDNSYLKSFLNKVNK 217


>gi|169342462|ref|ZP_02863522.1| Dcm [Clostridium perfringens C str. JGS1495]
 gi|169299461|gb|EDS81526.1| Dcm [Clostridium perfringens C str. JGS1495]
          Length = 339

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKRKEN 67
           RER++I+       +  FKF         L  I E  +D+K    +    +    +   
Sbjct: 159 RERVFIVSIRKDIDNGSFKFKEGNDNLVTLESITENFVDEKYYCKDNSYLKSFLNKVNK 217


>gi|327463101|gb|EGF09422.1| modification methylase DdeI [Streptococcus sanguinis SK1]
          Length = 351

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG----IKPRLGDI--LEEHIDD 49
           + A D+GVPQ R+R+  +   N    F++PT LG     +  L D+  LE  + D
Sbjct: 152 LLASDYGVPQNRKRVIFVGTKND--GFEYPTSLGTTITTEMALSDLPTLENELGD 204


>gi|282901524|ref|ZP_06309446.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193567|gb|EFA68542.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 436

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + A DFGV Q R RL ++ +     +  +P  L  KP    
Sbjct: 164 LNAADFGVAQNRSRLILLGWRKDMPKPVYPGVLFEKPTANS 204


>gi|315035876|gb|EFT47808.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0027]
          Length = 298

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKP 37
           + + D+ VPQ RER++II           FP     + 
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPFKKNDRT 183


>gi|256958119|ref|ZP_05562290.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
 gi|256948615|gb|EEU65247.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
          Length = 298

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKP 37
           + + D+ VPQ RER++II           FP     + 
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPFKKNDRT 183


>gi|238922582|ref|YP_002936095.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238874254|gb|ACR73961.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 443

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLG 34
           + + D+GVPQ RER++++    +   E K P P  
Sbjct: 164 LNSADYGVPQVRERVFVVAIKGDEGKEIKLPNPTH 198


>gi|182625480|ref|ZP_02953252.1| Dcm [Clostridium perfringens D str. JGS1721]
 gi|177909320|gb|EDT71778.1| Dcm [Clostridium perfringens D str. JGS1721]
          Length = 339

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR--KE 66
           RER++I+       +  FKF         L  I E  +D+K    +    +    +  K 
Sbjct: 159 RERVFIVSIRKDIDNGSFKFKEGNDNLVILESITESFVDEKYYCKDNSYLKSFLNKVNKR 218

Query: 67  NNKIA 71
             K  
Sbjct: 219 ICKDK 223


>gi|284050655|ref|ZP_06380865.1| DNA-cytosine methyltransferase [Arthrospira platensis str. Paraca]
 gi|79835464|gb|ABB52092.1| Mod [Arthrospira platensis]
          Length = 406

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG-DILEEHIDDKSTISNK 56
              D+GVPQ RER+ I+        F F   +   P  G D L  +   K  + + 
Sbjct: 160 NFADYGVPQYRERVLIVGVR-MDTGFNF---IHPFPEYGSDRLYPYRTAKQALKDV 211


>gi|310817513|ref|YP_003949871.1| cytosine-specific methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390585|gb|ADO68044.1| Cytosine-specific methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 332

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGD 41
           + A D+GVPQ R R  ++      +  F +P      P +G+
Sbjct: 153 LNASDYGVPQLRPRFILVALRPVAATHFIWPKAQREIPTVGN 194


>gi|291568714|dbj|BAI90986.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 406

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG-DILEEHIDDKSTISNK 56
              D+GVPQ RER+ I+        F F   +   P  G D L  +   K  + + 
Sbjct: 160 NFADYGVPQYRERVLIVGVR-MDTGFNF---IHPFPEYGSDRLYPYRTAKQALKDV 211


>gi|196048067|ref|ZP_03115245.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
 gi|196021323|gb|EDX60052.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
          Length = 427

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           M+A D+GVPQ RER+ +I   +    F     L     L DIL+     +  
Sbjct: 158 MQAHDYGVPQLRERIIVIGTESTCDPFPLIPKLKGPRVLSDILKNCPTSEYF 209


>gi|119503900|ref|ZP_01625982.1| putative cytosine-specific methyltransferase [marine gamma
           proteobacterium HTCC2080]
 gi|119460408|gb|EAW41501.1| putative cytosine-specific methyltransferase [marine gamma
           proteobacterium HTCC2080]
          Length = 463

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 3   ACDFGVPQRRERLYIIDFLNP 23
           A D+GVPQ R R+ ++   N 
Sbjct: 207 AKDYGVPQNRPRVLLVGIRND 227


>gi|115373224|ref|ZP_01460525.1| modification methylase NaeI [Stigmatella aurantiaca DW4/3-1]
 gi|115369825|gb|EAU68759.1| modification methylase NaeI [Stigmatella aurantiaca DW4/3-1]
          Length = 303

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGIKPRLGD 41
           + A D+GVPQ R R  ++      +  F +P      P +G+
Sbjct: 124 LNASDYGVPQLRPRFILVALRPVAATHFIWPKAQREIPTVGN 165


>gi|330997449|ref|ZP_08321300.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329570823|gb|EGG52539.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 357

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           A D+GVPQ R+RL  I   +    ++FP P
Sbjct: 156 AADYGVPQIRKRLVFIGLRDSKASYEFPVP 185


>gi|86559667|ref|YP_473487.1| cytosine methyltransferase [Clostridium perfringens]
 gi|86475939|dbj|BAE79114.1| cytosine methyltransferase [Clostridium perfringens]
          Length = 314

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 12  RERLYIIDFLNP--SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNK-LWEGHQKR 64
           RER++I+       +  FKF         L  I E  +D+K    +    +    +
Sbjct: 159 RERVFIVSIRKDIDNGSFKFKEGNDNLVTLESITENFVDEKYYCKDNSYLKSFLNK 214


>gi|229489296|ref|ZP_04383160.1| modification methylase NaeI [Rhodococcus erythropolis SK121]
 gi|229323789|gb|EEN89546.1| modification methylase NaeI [Rhodococcus erythropolis SK121]
          Length = 343

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           + A DFGVPQ R+  +++ F   + +F F  P  I+ R
Sbjct: 164 LNAADFGVPQDRKHGFLVAFQGAAADF-FENPQAIRSR 200


>gi|110799020|ref|YP_694603.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110673667|gb|ABG82654.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
          Length = 361

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 18/76 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLG-------------IKPRLGDILEEH 46
           + + ++GV Q+RER+  +       + ++FP P               +   LGDI   +
Sbjct: 173 LNSAEYGVAQKRERVIFVGIRKDLNKVYEFPNPTHGVGRKYPFVTVNDVIQELGDIKHNY 232

Query: 47  IDDKSTISNKLWEGHQ 62
           +  K   S +  +  +
Sbjct: 233 V--KY--SEERLKYMK 244


>gi|46019826|emb|CAE52348.1| putative cytosine-specific methyltransferase [Streptococcus
           thermophilus]
          Length = 365

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPL 33
           + A D+GVPQ R+R++ + +        FKFP P 
Sbjct: 155 LLAADYGVPQIRKRMFFVGYRKDLNYEYFKFPEPT 189


>gi|328947611|ref|YP_004364948.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447935|gb|AEB13651.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 391

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           + A DFGVPQ R+R +I+   NP+ E   PTP   K 
Sbjct: 158 LCATDFGVPQTRKRFFILASKNPTTELSAPTPTCKKT 194


>gi|317127846|ref|YP_004094128.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
 gi|315472794|gb|ADU29397.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
          Length = 564

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE----FKFPTPL 33
           + A ++GVPQ+R RL+II      V+       P P+
Sbjct: 325 LNAANYGVPQQRRRLFIIGVREDLVKKGRRVTLPEPI 361


>gi|302559403|ref|ZP_07311745.1| modification methylase NaeI [Streptomyces griseoflavus Tu4000]
 gi|302477021|gb|EFL40114.1| modification methylase NaeI [Streptomyces griseoflavus Tu4000]
          Length = 429

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTP-LGIKPRLGDILEEHIDDK 50
           + A DFGVPQ R R  ++  L    E F +P      +  +G  LE  +  K
Sbjct: 153 LHASDFGVPQLRPRFVLVALLPEYAEYFSWPEELPDARLTVGAALEGLMAAK 204


>gi|254413124|ref|ZP_05026896.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180288|gb|EDX75280.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 416

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK 36
           + A ++GVPQ RER+ ++ F    + + + P     K
Sbjct: 172 INAIEYGVPQDRERIILLGFRQSLIRDIELPVEPSAK 208


>gi|307152624|ref|YP_003888008.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982852|gb|ADN14733.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 708

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD-----ILEEHIDDK---ST 52
           + A D+GVPQRR+RL+ +        +K+P    +            L   +  K    T
Sbjct: 169 LNASDYGVPQRRQRLFCVA---HQSVWKWPAQTHLHHPYTAGEALGELALIVPAKAKFLT 225

Query: 53  ISNKLWEGHQKRKENNK 69
           +S    +  Q+ +  +K
Sbjct: 226 LSQD--QYIQRYEAASK 240


>gi|59802210|ref|YP_208922.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           FA 1090]
 gi|239997871|ref|ZP_04717795.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|240015148|ref|ZP_04722061.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           DGI18]
 gi|240017596|ref|ZP_04724136.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           FA6140]
 gi|240081740|ref|ZP_04726283.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|240116752|ref|ZP_04730814.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|240118973|ref|ZP_04733035.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|240122219|ref|ZP_04735181.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124509|ref|ZP_04737465.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|240124618|ref|ZP_04737504.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129189|ref|ZP_04741850.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260439487|ref|ZP_05793303.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|268593717|ref|ZP_06127884.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597838|ref|ZP_06132005.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683185|ref|ZP_06150047.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
           SK-92-679]
 gi|291042721|ref|ZP_06568462.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398253|ref|ZP_06642458.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|2330911|gb|AAC45838.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]
 gi|59719105|gb|AAW90510.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           FA 1090]
 gi|268547106|gb|EEZ42524.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551626|gb|EEZ46645.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623469|gb|EEZ55869.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
           SK-92-679]
 gi|291013155|gb|EFE05121.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611516|gb|EFF40586.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317165321|gb|ADV08862.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 333

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 195


>gi|300933957|ref|ZP_07149213.1| DNA-cytosine methyltransferase [Corynebacterium resistens DSM
           45100]
          Length = 363

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLG 34
              ++GVPQ RER+ I+     +   FK P P  
Sbjct: 152 NFAEYGVPQFRERVLIVGIRRDTGFNFKHPAPTH 185


>gi|296393591|ref|YP_003658475.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180738|gb|ADG97644.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 372

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           A D+GVPQ+R R+ +I          F FP P         +L         ++ + W  
Sbjct: 155 AADYGVPQQRWRVLVIGIREDQNPEGFAFPEPTHS---FEALLHSQ-----YVTGEYWHR 206

Query: 61  H 61
           H
Sbjct: 207 H 207


>gi|111220172|ref|YP_710966.1| putative DNA modification methylase [Frankia alni ACN14a]
 gi|111147704|emb|CAJ59362.1| putative DNA Modification methylase (Cytosine-specific
           methyltransferase) [Frankia alni ACN14a]
          Length = 401

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           + A ++GVPQRR+R  +I   +   E + P P   +P
Sbjct: 191 LNAANYGVPQRRQRTIVIG--SRIGEPELPAPTHQEP 225


>gi|268602423|ref|ZP_06136590.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
           PID18]
 gi|268586554|gb|EEZ51230.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
           PID18]
          Length = 315

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 137 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 177


>gi|240114016|ref|ZP_04728506.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
           MS11]
          Length = 333

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 195


>gi|254416651|ref|ZP_05030402.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176617|gb|EDX71630.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 428

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           + A +FGVPQ+R+RL+I+          +P P    P
Sbjct: 173 LNAVNFGVPQQRQRLFILGNQVGVKPLTYPQPQLQSP 209


>gi|325133150|gb|EGC55821.1| modification methylase HphIA [Neisseria meningitidis M6190]
 gi|325138766|gb|EGC61318.1| modification methylase HphIA [Neisseria meningitidis ES14902]
 gi|325197365|gb|ADY92821.1| modification methylase HphIA [Neisseria meningitidis G2136]
 gi|325203202|gb|ADY98655.1| modification methylase HphIA [Neisseria meningitidis M01-240355]
          Length = 332

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 195


>gi|257419811|ref|ZP_05596805.1| site-specific DNA methylase [Enterococcus faecalis T11]
 gi|257161639|gb|EEU91599.1| site-specific DNA methylase [Enterococcus faecalis T11]
          Length = 380

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 6   FGVPQRRERLYIIDFLNPS----VEFKFPTPLGIKPR 38
           +GVPQ R R+ I+   N      +EFK P P    P 
Sbjct: 167 YGVPQARHRIIIVGIRNDIAEQGIEFKVPAPTTPNPE 203


>gi|268680630|ref|YP_003305061.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618661|gb|ACZ13026.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 398

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 18/62 (29%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----------SVEFK-FPTPLGIKPRLGDILEEHID 48
           + A ++GVPQ RER+  I                + EF  +P P        DI  + + 
Sbjct: 199 LHAGNYGVPQTRERIIFIGVRKDILSEDLHVKLQNGEFSLYPEPTH------DIKHDFVT 252

Query: 49  DK 50
            K
Sbjct: 253 VK 254


>gi|315650253|ref|ZP_07903326.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
 gi|315487498|gb|EFU77807.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
          Length = 349

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           D+G+PQ R R+ I+   N  SV+F  P+P
Sbjct: 159 DYGIPQTRHRIIIVGIRNDISVKFNVPSP 187


>gi|291531290|emb|CBK96875.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 425

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLG--IKPRLGDILEEHIDDKST----I 53
           + A +FG+PQ R RL +I  F+    E           K    DI++E+   +      I
Sbjct: 216 LNASNFGLPQNRPRLLMISVFIKDYDEKTIEKIKSFFDKKSSKDIVDEYASSRYYHKIDI 275

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTN 88
            + L   +   K   +             N   + 
Sbjct: 276 KDLLRIDYNNAKYREEAK-------ECTPNDTVSR 303


>gi|157691446|ref|YP_001485908.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680204|gb|ABV61348.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 548

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + +  FGVPQ R+R +II + N       P  +  K    +I   
Sbjct: 322 LNSAHFGVPQERKRYFIIGYRNSKP--SLPKSILSKEDFFNIGHA 364


>gi|312200922|ref|YP_004020983.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232258|gb|ADP85113.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 384

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A DFGVPQRR+R  +I 
Sbjct: 172 LNAADFGVPQRRQRTIMIG 190


>gi|217965593|ref|YP_002351271.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|217334863|gb|ACK40657.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|307569856|emb|CAR83035.1| methyltransferase [Listeria monocytogenes L99]
          Length = 411

 Score = 42.2 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1   MKACDFGVPQRRERLYIID---FLNPSVEFKFPTPLGIKPR 38
           + + D+GVPQ RER+++I       P+ E+  P P     +
Sbjct: 225 VNSRDYGVPQLRERVFLIGTHETKQPNFEYILPPPTNGTKK 265


>gi|323650451|gb|ADX97303.1| M.FseI [Frankia sp. Eul1b]
          Length = 374

 Score = 41.8 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A DFGVPQRR+R  +I 
Sbjct: 162 LNAADFGVPQRRQRTIMIG 180


>gi|254470861|ref|ZP_05084264.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
 gi|211960003|gb|EEA95200.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
          Length = 498

 Score = 41.8 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLG 34
           + A  +GVPQ RER++++ +     +   FP P  
Sbjct: 183 LNAAYYGVPQMRERMFLLAYRREITDSIVFPKPTH 217


>gi|261736050|ref|YP_003257392.1| DNA methylase [Streptomyces sp. ZL12]
 gi|261349173|gb|ACX71105.1| DNA methylase [Streptomyces sp. ZL12]
          Length = 368

 Score = 41.8 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           + A ++GVPQ RER  +I   +   +   P P   +    D+ 
Sbjct: 170 LNAANYGVPQTRERAVLIA--SRVRDVTAPEPTHAEHPADDLF 210


>gi|317501747|ref|ZP_07959934.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896869|gb|EFV18953.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 499

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE---EHIDDKST 52
           + +  FG+PQ R+R+YI+  L+  +             LG++LE     ++   T
Sbjct: 219 IDSQYFGLPQSRKRVYIVGMLDAKINLD--NFEKKTVTLGEVLEHGLPTVESNFT 271


>gi|1709155|sp|P50196|MTE8_ECOLX RecName: Full=Modification methylase Eco47II; Short=M.Eco47II;
           AltName: Full=Cytosine-specific methyltransferase
           Eco47II
 gi|558571|emb|CAA57629.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Escherichia coli]
 gi|1098127|prf||2115269B methyltransferase Eco47IIM
          Length = 417

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLN---PSVEFKFPTPLGIKPRLGDILEE 45
           +KA  + VPQ+RERL I+   N     +++++P+       L D L++
Sbjct: 225 LKAIFYKVPQKRERLIIVAVRNDLADGIDYEWPSSYNKILTLKDALKK 272


>gi|400287|sp|P31033|MTM4_NEIGO RecName: Full=Modification methylase NgoMIV; Short=M.NgoMIV;
           AltName: Full=Cytosine-specific methyltransferase NgoMIV
          Length = 312

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLW 58
           + A D+GV Q R R+  +   N  +  FK+P P   +P+ +G++L +       +S   W
Sbjct: 144 LYAADYGVSQLRPRVLFVALKNEYTNFFKWPEPNSEQPKTVGELLFD------LMSENNW 197

Query: 59  EGHQKRKEN 67
           +G    +  
Sbjct: 198 QGAHNWRLK 206


>gi|116748761|ref|YP_845448.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697825|gb|ABK17013.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 429

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD 49
           + A ++GVPQ RER++++  ++ +  F+ P         GD LE  +  
Sbjct: 185 LNAVNYGVPQSRERVFLLASIDGTT-FQIPPVTHG---CGDRLEPRVTA 229


>gi|290892537|ref|ZP_06555530.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
 gi|290557846|gb|EFD91367.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
          Length = 409

 Score = 41.8 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1   MKACDFGVPQRRERLYIID---FLNPSVEFKFPTPLGIKPR 38
           + + D+GVPQ RER+++I       P+ E+  P P     +
Sbjct: 225 VNSRDYGVPQLRERVFLIGTHETKQPNFEYILPPPTNGTKK 265


>gi|189459597|ref|ZP_03008382.1| hypothetical protein BACCOP_00223 [Bacteroides coprocola DSM 17136]
 gi|189433679|gb|EDV02664.1| hypothetical protein BACCOP_00223 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 14/59 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A +FGVPQRR+R++II      +    P+PL   P +              +  +W 
Sbjct: 290 LNAEEFGVPQRRKRVFIIG-SLEEISIPQPSPLFYMPSVK-------------TPNMWN 334


>gi|305665822|ref|YP_003862109.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
 gi|88710593|gb|EAR02825.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
          Length = 408

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A D+G+PQRR R++ I +   +  +K          L DI
Sbjct: 160 INAADYGMPQRRRRIFFIAYHKSTAIYKKLKKADSSQWLNDI 201


>gi|302870498|ref|YP_003839135.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302573357|gb|ADL49559.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 383

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 9/50 (18%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------RLGDILEEHI 47
            D GVPQ RERL ++       + K   P+  +P       + D L+   
Sbjct: 165 ADLGVPQHRERLIVVGVRR---DLKVRPPIIPEPYAGRHVTVADALDTSP 211


>gi|298346143|ref|YP_003718830.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236204|gb|ADI67336.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 355

 Score = 41.8 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GV + R+R++ I F    +++F FP              E    K T+ + +W+
Sbjct: 148 VNAKNYGVAEERKRVFYIGFRKDLNIDFVFPKGST----------EDDAKKITLRDVIWD 197


>gi|23100791|ref|NP_694258.1| cytosine-specific methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|50897489|sp|Q8EL95|MT36_OCEIH RecName: Full=Putative modification methylase OB3336; AltName:
           Full=Cytosine-specific methyltransferase; AltName:
           Full=M.OihORF3336P
 gi|22779025|dbj|BAC15292.1| cytosine-specific methyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 460

 Score = 41.8 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF-PTPLGIK 36
           + A DFGVPQ R RL+++       + KF P P    
Sbjct: 177 LNAADFGVPQTRVRLFVMAIKKDIGKIKFIPEPTHKP 213


>gi|315657354|ref|ZP_07910236.1| modification methylase NgoPII [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491826|gb|EFU81435.1| modification methylase NgoPII [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 355

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GV + R+R++ I F    +++F FP              E    K T+ + +W+
Sbjct: 148 VNAKNYGVAEERKRVFYIGFRKDLNIDFVFPKGST----------EDDAKKITLRDVIWD 197


>gi|313667096|gb|ADR72993.1| M1.BspMI [Bacillus sp. M(2010)]
          Length = 348

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           +   D+GVPQ RER+ II       E  FP     +   G++
Sbjct: 158 LNMADYGVPQIRERVIIIG-NRLGEEIDFPEKDYSELPTGNL 198


>gi|304390097|ref|ZP_07372051.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326579|gb|EFL93823.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 355

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GV + R+R++ I F    +++F FP              E    K T+ + +W+
Sbjct: 148 VNAKNYGVAEERKRVFYIGFRKDLNIDFVFPKGST----------EDDAKKITLRDVIWD 197


>gi|332704951|ref|ZP_08425037.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
 gi|332356303|gb|EGJ35757.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
          Length = 360

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           ++A  +G+PQ RERL+ +  L    +F FP    
Sbjct: 150 LEAASYGIPQYRERLFFVG-LATKNDFTFPRKTH 182


>gi|170718974|ref|YP_001784137.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827103|gb|ACA32474.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 323

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 13/57 (22%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + +  +GVPQ RER+Y +          ++FP     KP               +S+
Sbjct: 148 LDSQFYGVPQMRERVYFVGIRKDIKHKPYQFPEMEDAKPI-----------SYYLSD 193


>gi|315654722|ref|ZP_07907628.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
 gi|315491186|gb|EFU80805.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
          Length = 360

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A ++GV + R+R++ I F    +++F FP              E    K T+ + +W+
Sbjct: 153 VNAKNYGVAEERKRVFYIGFRKDLNIDFVFPKGST----------EDDAKKITLRDVIWD 202


>gi|307825806|ref|ZP_07656022.1| DNA-cytosine methyltransferase [Methylobacter tundripaludum SV96]
 gi|307733114|gb|EFO03975.1| DNA-cytosine methyltransferase [Methylobacter tundripaludum SV96]
          Length = 359

 Score = 41.8 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
           + A D+G+PQRR+R++I+   +  +EF    P      +   +E++
Sbjct: 161 LDARDYGLPQRRKRVFILGIRSD-IEFNSVWPPAATHGIEKEIEKN 205


>gi|323485262|ref|ZP_08090612.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|323401440|gb|EGA93788.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 335

 Score = 41.8 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILE-EHIDDKSTIS 54
           +   D+G+PQ RER + +  L  +  +F+      +K  + + LE   + D   ++
Sbjct: 167 LDCRDYGIPQARERCFTVSILGDNAFDFELMEKRPMK-NISNFLEYGDVPDCYLVT 221


>gi|254673893|emb|CBA09676.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
          Length = 326

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGD 41
           + A DFGVPQ R R+  I       +  FP PL I    +G 
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQISHQTVGS 195


>gi|21226380|ref|NP_632302.1| DNA-cytosine methyltransferase [Methanosarcina mazei Go1]
 gi|20904635|gb|AAM29974.1| DNA-cytosine methyltransferase [Methanosarcina mazei Go1]
          Length = 423

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 17/85 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-------------PRLGDILEEHI 47
           + A DF V Q R R+  I + N   +  +P  L                P L        
Sbjct: 200 LNAKDFSVLQERNRIIFIGWKNEH-DLSYPDFLKTPLGRFHVSSLLNDLPPLQAGEGTEG 258

Query: 48  DDKSTISNKLW--EGHQKRKENNKI 70
             K T     W  E  Q+ K   K 
Sbjct: 259 PAKYT-KPFSWSSEYLQRFKIREKK 282


>gi|308229522|gb|ADO24174.1| M.AclI [Acinetobacter calcoaceticus]
          Length = 458

 Score = 41.8 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGD 41
           + A D+GVPQ R R++ +   N    E  FP   G     GD
Sbjct: 272 VNAKDYGVPQSRARVFFLAIRNDIQSELGFPDAEGNNLTFGD 313


>gi|312903177|ref|ZP_07762357.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
 gi|310633053|gb|EFQ16336.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
          Length = 398

 Score = 41.8 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + + D+ VPQ RER++II           FP          + ++   + K T
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPLEKKNGTTAKNNIKPINNSKKT 198


>gi|119483468|ref|ZP_01618882.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119458235|gb|EAW39357.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 407

 Score = 41.8 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           + A D+G+PQ R RL+I+      V+   P P     
Sbjct: 157 LNATDYGIPQNRRRLFIVA---SKVKITHPFPPSTHT 190


>gi|157164246|ref|YP_001466260.1| modification methylase HaeIII (cytosine-specificmethyltransferase
           HaeIII; M.HaeIII) [Campylobacter concisus 13826]
 gi|112801543|gb|EAT98887.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
           HaeIII) (M.HaeIII) [Campylobacter concisus 13826]
          Length = 388

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A DFGVPQ R+R+ II     
Sbjct: 171 LNAVDFGVPQDRKRIIIIGTRKD 193


>gi|86360841|ref|YP_472728.1| DNA (cytosine-5-)-methyltransferase protein [Rhizobium etli CFN 42]
 gi|86284943|gb|ABC94001.1| probable DNA (cytosine-5-)-methyltransferase protein [Rhizobium
           etli CFN 42]
          Length = 504

 Score = 41.8 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLG 34
           + A  +GVPQ RER+ +I        + +FP P  
Sbjct: 186 LNAAFYGVPQMRERMILIAIRKELADDVEFPAPTH 220


>gi|46019827|emb|CAE52349.1| putative cytosine-specific methyltransferase [Streptococcus
           thermophilus]
          Length = 408

 Score = 41.4 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           DFGVPQ+R+R+ II     +    +   L     L
Sbjct: 189 DFGVPQKRKRVIIIGVRRDNQSTDYQEILNQIYSL 223


>gi|332968936|gb|EGK07982.1| DNA-cytosine methyltransferase [Desmospora sp. 8437]
          Length = 379

 Score = 41.4 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + A D+GVPQ R R +I+          FP          +ILE
Sbjct: 148 LCAADYGVPQTRYRAFIVG-SKLDTPLNFPPQKTHYNPDKNILE 190


>gi|254804928|ref|YP_003083149.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|254668470|emb|CBA05754.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
          Length = 312

 Score = 41.4 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLW 58
           + A D+GV Q R R+  +   N  +  FK+P P   +P+ +G++L +       +S   W
Sbjct: 144 LYAADYGVSQLRPRVLFVALKNEYTNFFKWPEPNSEQPKTVGELLFD------LMSENNW 197

Query: 59  EGHQKRKEN 67
           +G    +  
Sbjct: 198 QGAHNWRLK 206


>gi|312142618|ref|YP_003994064.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311903269|gb|ADQ13710.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 406

 Score = 41.4 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 17  IIDFLNPSVEFK---FPTPLG--IKPRLGDILEEHIDDKSTISNKL---WEGHQKRKENN 68
           I  F      +     P  +G   K ++ DILE ++  +  +S+K    WE  +  K   
Sbjct: 240 IAGFQKDGEIYTSAVDPKEVGEAKKTKIKDILESNVPKRYYLSDKELEDWEYMKGAKAEK 299

Query: 69  KIAGKGFGY-----GLFFENS--ATTNTL 90
           ++A  G  Y      + F +S      T+
Sbjct: 300 RVAKNGHEYTFREGAIPFPDSVDEPARTI 328


>gi|254416032|ref|ZP_05029788.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177207|gb|EDX72215.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 398

 Score = 41.4 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A  FG+PQ R+R++ + F    +   + +PL   
Sbjct: 210 LSAPSFGIPQMRKRVFFVGFRQEKMASNYQSPLPTH 245


>gi|268611036|ref|ZP_06144763.1| prophage LambdaSa2, type II DNA modification methyltransferase,
           putative [Ruminococcus flavefaciens FD-1]
          Length = 425

 Score = 41.4 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + + +FGV Q R+R++II FL 
Sbjct: 146 LNSANFGVAQARKRVFIIGFLR 167


>gi|194098495|ref|YP_002001557.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|239998889|ref|ZP_04718813.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240115566|ref|ZP_04729628.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|240125661|ref|ZP_04738547.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|254493672|ref|ZP_05106843.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440624|ref|ZP_05794440.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268594728|ref|ZP_06128895.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268601236|ref|ZP_06135403.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268684247|ref|ZP_06151109.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043935|ref|ZP_06569651.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|193933785|gb|ACF29609.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|226512712|gb|EEH62057.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548117|gb|EEZ43535.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268585367|gb|EEZ50043.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268624531|gb|EEZ56931.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012398|gb|EFE04387.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|317164179|gb|ADV07720.1| DNA modification methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 312

 Score = 41.4 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLW 58
           + A D+GV Q R R+  +   N  +  FK+P P   +P+ +G++L +       +S   W
Sbjct: 144 LYAADYGVSQLRPRVLFVALKNEYTNFFKWPEPNSEQPKTVGELLFD------LMSENNW 197

Query: 59  EGHQKRKEN 67
           +G    +  
Sbjct: 198 QGAHNWRLK 206


>gi|59801274|ref|YP_207986.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|240014199|ref|ZP_04721112.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae DGI18]
 gi|240016634|ref|ZP_04723174.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA6140]
 gi|240080823|ref|ZP_04725366.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|240112810|ref|ZP_04727300.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae MS11]
 gi|240117858|ref|ZP_04731920.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID1]
 gi|240121762|ref|ZP_04734724.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID24-1]
 gi|240123416|ref|ZP_04736372.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID332]
 gi|240128118|ref|ZP_04740779.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268596944|ref|ZP_06131111.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268598881|ref|ZP_06133048.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603557|ref|ZP_06137724.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682037|ref|ZP_06148899.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686505|ref|ZP_06153367.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399137|ref|ZP_06643302.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|5051442|emb|CAB44950.1| DNA modification methylase [Neisseria gonorrhoeae]
 gi|5262959|emb|CAB45015.2| DNA modification methylase [Neisseria gonorrhoeae]
 gi|59718169|gb|AAW89574.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|268550732|gb|EEZ45751.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268583012|gb|EEZ47688.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587688|gb|EEZ52364.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622321|gb|EEZ54721.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626789|gb|EEZ59189.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610551|gb|EFF39661.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 312

 Score = 41.4 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLW 58
           + A D+GV Q R R+  +   N  +  FK+P P   +P+ +G++L +       +S   W
Sbjct: 144 LYAADYGVSQLRPRVLFVALKNEYTNFFKWPEPNSEQPKTVGELLFD------LMSENNW 197

Query: 59  EGHQKRKEN 67
           +G    +  
Sbjct: 198 QGAHNWRLK 206


>gi|256419690|ref|YP_003120343.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
 gi|256034598|gb|ACU58142.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
          Length = 390

 Score = 41.4 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + + D+ VPQ R+R  ++  L    +F FP   
Sbjct: 162 VNSADYRVPQNRKRFMLVGVLKGK-KFIFPEAP 193


>gi|168467807|ref|ZP_02701644.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|195629099|gb|EDX48473.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
          Length = 819

 Score = 41.4 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 1   MKACDFGVPQRRERLYII-----DFLNPSVEFKFPTPLGIKPR 38
           + A  FGVPQRR R++++      F   ++ F+F       P 
Sbjct: 198 LDAEYFGVPQRRHRVFVVGSAGEGFDPETILFEFEGVRRNTPP 240


>gi|307290179|ref|ZP_07570098.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|306498807|gb|EFM68305.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
          Length = 416

 Score = 41.4 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + + D+ VPQ RER++II  L   
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGK 169


>gi|206972356|ref|ZP_03233302.1| modification methylase [Bacillus cereus AH1134]
 gi|206732681|gb|EDZ49857.1| modification methylase [Bacillus cereus AH1134]
          Length = 309

 Score = 41.4 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL-----GIKPRLGDILEEHID 48
           +   DF +PQ+R+RL++I F      F  P P        +  + DI E + D
Sbjct: 154 LDTFDFNLPQKRKRLFVIGFKK---SFSMPDPTQFQFFHRQLTIKDIKETNPD 203


>gi|315162212|gb|EFU06229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0645]
          Length = 398

 Score = 41.4 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + + D+ VPQ RER++II           FP          + +    + K T
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPFERKNGTTAKNNIRPINNSKKT 198


>gi|257081612|ref|ZP_05575973.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|256989642|gb|EEU76944.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
          Length = 398

 Score = 41.4 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + + D+ VPQ RER++II           FP          + ++   + K T
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPLERKNGTTAKNNIKPINNSKKT 198


>gi|290968468|ref|ZP_06560007.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781464|gb|EFD94053.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
          Length = 699

 Score = 41.4 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-LGIKPRLGDILEE 45
           ++A D+GVPQ RER+  +   N ++    P P +     + D +E+
Sbjct: 488 VRASDYGVPQNRERVIFLCSKNKAI--SLPEPTVKKTTTVRDAIED 531


>gi|197124335|ref|YP_002136286.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
 gi|196174184|gb|ACG75157.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
          Length = 508

 Score = 41.4 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A  +GVPQ RER++ I     
Sbjct: 177 LNAAMYGVPQLRERIFFIGIRKD 199


>gi|325478716|gb|EGC81827.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 480

 Score = 41.4 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR+R++++ 
Sbjct: 175 LDAKYFGVPQRRKRIFLVA 193


>gi|317126940|ref|YP_004093222.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
 gi|315471888|gb|ADU28491.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
          Length = 382

 Score = 41.4 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 5   DFGVPQRRERLYIIDFLNP----SVEFKFPTPLGI-----KPRLGDILEEHIDD 49
           ++GVPQ R R+ I+   N      +EFK P P  +     K     ILE  I +
Sbjct: 167 EYGVPQARHRIIIVGIRNDLAKEGIEFKVPAPTTLASTEYKTSRQAILEPPIPE 220


>gi|150400370|ref|YP_001324137.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
 gi|150013073|gb|ABR55525.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
          Length = 368

 Score = 41.4 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +   D+GVPQ R R+ I+   N  V +  +P P+    R  + L E +  K  I + LW+
Sbjct: 190 LNTADYGVPQTRIRVIIMGIRNDYVGDIMYPKPV----RGNEGLFEWMTSKEAI-DDLWD 244


>gi|24527986|emb|CAD33713.1| putative DNA methylase [Escherichia coli]
          Length = 310

 Score = 41.4 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPR 38
           +   D+GVPQ R R+ I+       + + FP P   +  
Sbjct: 142 LNCADYGVPQTRMRVIILGVRKDLPDIENFPPPKTHEKE 180


>gi|304388871|ref|ZP_07370921.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|302028149|gb|ADK90963.1| unknown [Neisseria meningitidis]
 gi|304337164|gb|EFM03348.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|316985914|gb|EFV64853.1| modification methylase HphIA [Neisseria meningitidis H44/76]
 gi|325143322|gb|EGC65656.1| cytosine-specificmethyltransferase HphIA [Neisseria meningitidis
           961-5945]
          Length = 276

 Score = 41.4 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A DFGVPQ R R+  I       +  FP PL I
Sbjct: 155 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQI 188


>gi|255972594|ref|ZP_05423180.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256762698|ref|ZP_05503278.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257422413|ref|ZP_05599403.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
 gi|255963612|gb|EET96088.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256683949|gb|EEU23644.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257164237|gb|EEU94197.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
          Length = 351

 Score = 41.4 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIK 36
           + + D+ VPQ RER++II           FP     +
Sbjct: 147 LNSKDY-VPQNRERVFIIGHLRGERTRKVFPFKKNDR 182


>gi|261420917|ref|YP_003254598.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC61]
 gi|319768595|ref|YP_004134095.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC52]
 gi|261377375|gb|ACX80116.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC61]
 gi|317113461|gb|ADU95952.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC52]
          Length = 370

 Score = 41.4 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           ++GVPQ R R+ I+      +++FK P P           ++++  K  I+N
Sbjct: 165 EYGVPQMRHRIIIVGIRKDLNLKFKVPAPTTP--------DKYVTAKEAITN 208


>gi|170718749|ref|YP_001783936.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168826878|gb|ACA32249.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 372

 Score = 41.4 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
              +FGVPQ RER+ I+        F F  P+   
Sbjct: 159 NFAEFGVPQFRERVLIVGVR-LDTGFNFQHPMPTH 192


>gi|311977229|gb|ADQ20489.1| M.AspCNI [Acinetobacter sp. 1690]
          Length = 327

 Score = 41.4 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           +   D+GV Q RER+ I+       VEF+ P             + ++  K  +
Sbjct: 148 VNFADYGVAQLRERVLIVGVRKDLDVEFEAPKKTHSP-------DSYVPSKEAL 194


>gi|159477134|ref|XP_001696666.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158282891|gb|EDP08643.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1333

 Score = 41.0 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + A ++GVPQ R+R++II  L   V   +P P+  
Sbjct: 994  LNAGNYGVPQSRQRVFIIAALPEEVLPNWPRPMHS 1028


>gi|313144510|ref|ZP_07806703.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313129541|gb|EFR47158.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 323

 Score = 41.0 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHID 48
           + + DF + Q RER+Y +        +F F +    K  L + L    D
Sbjct: 145 LNSLDFALAQARERVYFVGIRKDKKRDFSF-SQRMTKKALKEFLTPKQD 192


>gi|298377907|ref|ZP_06987856.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_19]
 gi|298265151|gb|EFI06815.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 41.0 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
            A D+ VPQ RER+ +I   N   +F    
Sbjct: 201 DAYDYDVPQHRERVILIGIRNGE-DFTLED 229


>gi|110643909|ref|YP_671639.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
           536]
 gi|110345501|gb|ABG71738.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
           536]
          Length = 305

 Score = 41.0 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FPTPLGIKPR 38
           +   D+GVPQ R R+ I+       + + FP P   +  
Sbjct: 137 LNCADYGVPQTRMRVIILGVRKDLPDIENFPPPKTHEKE 175


>gi|254671508|emb|CBA09095.1| site-specific DNA-methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 258

 Score = 41.0 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A DFGVPQ R R+  I       +  FP PL I
Sbjct: 137 LSAADFGVPQIRSRVIFIG-RRDKGKISFPEPLQI 170


>gi|158339669|ref|YP_001520676.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
           MBIC11017]
 gi|158309910|gb|ABW31526.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
           MBIC11017]
          Length = 382

 Score = 41.0 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF-KFPT-----PLGIKPRLGDILE 44
           + A DFGVPQRR R++II           FP      PL +   + D+LE
Sbjct: 154 LDASDFGVPQRRLRIFIIGSRLDLGWKPIFPKSKTKIPLTVGEAISDLLE 203


>gi|152974572|ref|YP_001374089.1| DNA-cytosine methyltransferase [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023324|gb|ABS21094.1| DNA-cytosine methyltransferase [Bacillus cytotoxicus NVH 391-98]
          Length = 371

 Score = 41.0 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK----------PRLGDILEEHIDDKST 52
           ++GVPQ R R+ I+   N  +VE++ P P                L DI E+  + + T
Sbjct: 166 EYGVPQARHRIIIVGIRNDMNVEYRVPAPTHGPGREHPYVTASQALEDIPEDAPNHEFT 224


>gi|224438066|ref|ZP_03659005.1| DNA-cytosine methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 342

 Score = 41.0 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHID 48
           + + DF + Q RER+Y +        +F F +    K  L + L    D
Sbjct: 164 LNSLDFALAQARERVYFVGIRKDKKRDFSF-SQRMTKKALKEFLTPKQD 211


>gi|52841468|ref|YP_095267.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628579|gb|AAU27320.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 416

 Score = 41.0 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDD---KST 52
           ++A    VPQ+RERL ++           FP        L + L++  D    K T
Sbjct: 222 LRAQYLDVPQKRERLVMLGIRKDLKGTIAFPKEQDYTISLREALKDVPDAPGQKYT 277


>gi|126700764|ref|YP_001089661.1| putative DNA-methyltransferase [Clostridium difficile 630]
 gi|115252201|emb|CAJ70040.1| putative DNA-methyltransferase [Clostridium difficile]
          Length = 541

 Score = 41.0 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + D+GVPQ RER  +I 
Sbjct: 314 LNSIDYGVPQNRERFVLIG 332


>gi|313201769|ref|YP_004040427.1| modification methylase [Methylovorus sp. MP688]
 gi|312441085|gb|ADQ85191.1| putative modification methylase [Methylovorus sp. MP688]
          Length = 378

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A  FG+PQ R+RL+I    +   + +      I
Sbjct: 142 INAIHFGLPQNRQRLFITGIRDHEPKIRLLPKSDI 176


>gi|228989002|ref|ZP_04149032.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770724|gb|EEM19259.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 445

 Score = 41.0 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           M+A D+GVPQ RER+ +I   +    F     L     LG++L++  + +  
Sbjct: 165 MQAHDYGVPQLRERVIVIGTKSNINPFSVIPKLDGPRTLGEVLKDCPESEFF 216


>gi|258652183|ref|YP_003201339.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258555408|gb|ACV78350.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM 44233]
          Length = 467

 Score = 41.0 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL-EEHIDDKSTISN-----KLW 58
           +FG+PQ R+R Y +   +   +F++P        +  +L  + +D +   +       +W
Sbjct: 158 EFGIPQIRDRAYFVGSRDGLEQFRWPETEKSSTDIKSVLKHDLVDVRPIPAQTTHAINMW 217

Query: 59  EGHQKR 64
           +   KR
Sbjct: 218 DDFLKR 223


>gi|302873652|ref|YP_003842285.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686624|ref|ZP_07629070.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576509|gb|ADL50521.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 445

 Score = 41.0 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           M A ++GVPQRR R+  I + +  V  ++P P   +           + K TI + + + 
Sbjct: 182 MDAANYGVPQRRNRVIFIAYRDDVVAPQYPEPTVTE-----------ETKLTIEDAITDL 230

Query: 61  HQKRKENNKI 70
            ++R+  N+I
Sbjct: 231 IRERRVRNRI 240


>gi|329960681|ref|ZP_08299024.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT 12057]
 gi|328532554|gb|EGF59348.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT 12057]
          Length = 572

 Score = 41.0 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV 25
           + A D+G+PQRR R YI+ +   SV
Sbjct: 163 INAADYGMPQRRRRTYIVGYRKGSV 187


>gi|323454079|gb|EGB09949.1| hypothetical protein AURANDRAFT_62427 [Aureococcus anophagefferens]
          Length = 634

 Score = 41.0 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 8   VPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR-LGDILEEHIDD 49
           +PQ RER+YI+           F++P      PR + D+LE+  D 
Sbjct: 353 LPQARERVYIVAIRADLAAARRFRWPALERRGPRSIRDVLEDPPDA 398


>gi|306835815|ref|ZP_07468812.1| modification methylase NaeI [Corynebacterium accolens ATCC 49726]
 gi|304568289|gb|EFM43857.1| modification methylase NaeI [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score = 41.0 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILEE 45
           ++A ++GVPQ R R  ++       E F +P  +  +  +G+ L++
Sbjct: 154 LQAANYGVPQLRPRFILVALKKEFSEFFAWPNKVPHQVTVGEALKD 199


>gi|253997214|ref|YP_003049278.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
 gi|253983893|gb|ACT48751.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
          Length = 358

 Score = 41.0 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 5   DFGVPQRRERLYIIDFL-NPSVEFKFPTPLGI 35
           ++G+PQ R R+ ++ F  + +++F  P P   
Sbjct: 168 EYGIPQSRHRIILVGFRSDLNIKFSPPAPTHK 199


>gi|323484104|ref|ZP_08089474.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
           WAL-14163]
 gi|323402546|gb|EGA94874.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
           WAL-14163]
          Length = 430

 Score = 41.0 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + D GVPQ RER++ I 
Sbjct: 151 LNSKDHGVPQNRERVFFIA 169


>gi|320527420|ref|ZP_08028601.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
 gi|320132133|gb|EFW24682.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
          Length = 428

 Score = 41.0 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
            A +FGV Q R R+ I+ +L  S   K+P  L I+
Sbjct: 207 NARNFGVLQNRRRMIIVGWLKES-GLKYPDFLKIE 240


>gi|310657622|ref|YP_003935343.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
           519]
 gi|308824400|emb|CBH20438.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 344

 Score = 41.0 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           A D+GVPQ R+R+  +   +   EF+FP  +     
Sbjct: 150 ASDYGVPQSRKRVIFVG--HQDKEFEFPEKMNTYVT 183


>gi|257421714|ref|ZP_05598704.1| predicted protein [Enterococcus faecalis X98]
 gi|257163538|gb|EEU93498.1| predicted protein [Enterococcus faecalis X98]
          Length = 286

 Score = 41.0 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 18/99 (18%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID---DKSTISNKLWEG 60
            +F +PQ R+RL +I    P  +  +P  +    RL DILE++ +        S++L  G
Sbjct: 141 ANFWLPQERKRLIVIGSKRPFPKLDYPGQI-TNLRLKDILEKNPNVSIPDYV-SSRL-NG 197

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
             + K             +         T  A Y KD S
Sbjct: 198 KYRDKP------------IITNLDGIAPTAVAHYAKDKS 224


>gi|153870986|ref|ZP_02000267.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152072545|gb|EDN69730.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 350

 Score = 41.0 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+G PQ+R RL+ +   N    F+FP P   +
Sbjct: 266 LMAADYGTPQKRRRLFFVA-ANDLQGFQFPAPTHCE 300


>gi|109947738|ref|YP_664966.1| site-specific DNA methyltransferase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714959|emb|CAJ99967.1| site-specific DNA methyltransferase [Helicobacter acinonychis str.
           Sheeba]
          Length = 327

 Score = 41.0 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     + +  P       RL            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRRDLKINYTLPKGSTHLKRL------------TLKDVIWD 191


>gi|145641419|ref|ZP_01796998.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
           influenzae R3021]
 gi|145273962|gb|EDK13829.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
           influenzae 22.4-21]
          Length = 298

 Score = 40.7 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP 32
           + +  +G PQ RER+Y +         ++ FP P
Sbjct: 121 LDSQFYGTPQMRERIYFVGIRKDIHHSDYIFPEP 154


>gi|268589649|ref|ZP_06123870.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
 gi|291314961|gb|EFE55414.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
          Length = 424

 Score = 40.7 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           +KA  + VPQ+RERL ++        S+++ +P+P      + D L
Sbjct: 219 LKAIFYQVPQKRERLILVAIRKDLVNSIKYDWPSPYHKVMTMRDAL 264


>gi|170077471|ref|YP_001734109.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
 gi|169885140|gb|ACA98853.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 413

 Score = 40.7 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           +   D+G PQRR+RL ++ +        +P P  
Sbjct: 158 LNGADYGAPQRRKRLILLGYRRDVPSVAYPAPSH 191


>gi|86151502|ref|ZP_01069717.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841849|gb|EAQ59096.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 187

 Score = 40.7 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           + A DFGVPQ R+R ++I       +F 
Sbjct: 153 LNALDFGVPQNRQRAFLIASKIFKFDFS 180


>gi|318042684|ref|ZP_07974640.1| DNA-cytosine methyltransferase [Synechococcus sp. CB0101]
          Length = 361

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + DFG+ Q R R  ++      + F+F +P   
Sbjct: 152 NSADFGLAQTRHRFMLVGIRRD-IGFRFLSPPPT 184


>gi|308063355|gb|ADO05242.1| site-specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     + + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRKDLKINYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|315586485|gb|ADU40866.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
 gi|317178791|dbj|BAJ56579.1| Type II modification enzyme [Helicobacter pylori F30]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     + + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRKDLKINYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|217034513|ref|ZP_03439924.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
 gi|216943054|gb|EEC22533.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     + + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRKDLKINYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|169829195|ref|YP_001699353.1| modification methylase SPRI [Lysinibacillus sphaericus C3-41]
 gi|168993683|gb|ACA41223.1| Modification methylase SPRI [Lysinibacillus sphaericus C3-41]
          Length = 418

 Score = 40.7 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 1   MKACDFGV-----PQRRERLYIIDFLNPSVEFK-FP 30
           +   DF       PQ RER++I+  L  +   + FP
Sbjct: 148 LNTKDFSTKERPTPQNRERIFIVGHLRGTSTREVFP 183


>gi|217033005|ref|ZP_03438476.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298736554|ref|YP_003729080.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945262|gb|EEC23940.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298355744|emb|CBI66616.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     V + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRRDLKVNYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|147919344|ref|YP_686920.1| C-5 cytosine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622316|emb|CAJ37594.1| C-5 cytosine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 419

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILEEHIDDK 50
           + A +F V Q R+R+ II +        +P     +    + D+L +  + K
Sbjct: 200 LNASNFNVLQNRKRIIIIGWKKE-YNLSYPDFAKSQTPYIINDLLSDLPELK 250


>gi|57116673|gb|AAW33810.1| M.HinP1I methyltransferase [Haemophilus influenzae]
          Length = 322

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTP 32
           + +  +G PQ RER+Y +         ++ FP P
Sbjct: 145 LDSQFYGTPQMRERIYFVGIRKDIHHSDYVFPEP 178


>gi|51245886|ref|YP_065770.1| modification methylase [Desulfotalea psychrophila LSv54]
 gi|50876923|emb|CAG36763.1| probable modification methylase [Desulfotalea psychrophila LSv54]
          Length = 360

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGI 35
           ++GVPQ R R+ I+      + EFK P P   
Sbjct: 167 EYGVPQARHRIIIVGIRKDLNTEFKVPAPTTP 198


>gi|317180612|dbj|BAJ58398.1| Type II modification enzyme [Helicobacter pylori F32]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     V + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRKDLKVNYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|308184264|ref|YP_003928397.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060184|gb|ADO02080.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 188

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+G PQ RER++++ 
Sbjct: 145 LNALDYGAPQVRERVFLVG 163


>gi|188527304|ref|YP_001909991.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
 gi|188143544|gb|ACD47961.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
          Length = 327

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+GV Q R R++ I F     + + FP       +L            T+ + +W+
Sbjct: 144 VNAKDYGVAQERLRVFYIGFRKDLKINYIFPKGSTHLKKL------------TLKDVIWD 191


>gi|322418052|ref|YP_004197275.1| DNA-cytosine methyltransferase [Geobacter sp. M18]
 gi|320124439|gb|ADW11999.1| DNA-cytosine methyltransferase [Geobacter sp. M18]
          Length = 385

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRL 39
           + A D+G  Q+R R+ I    N   ++   P P   + RL
Sbjct: 174 VNAADYGAAQKRHRVIIAGIRNDLGIKLNLPAPTHSRERL 213


>gi|295110825|emb|CBL24778.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 311

 Score = 40.7 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIK 36
           +   ++GVPQ R+R+ II       E   F+FP P   K
Sbjct: 142 VNMANYGVPQTRQRVLIIGQRKDYGEEMLFQFPQPTFSK 180


>gi|241661827|ref|YP_002980187.1| DNA-cytosine methyltransferase [Ralstonia pickettii 12D]
 gi|240863854|gb|ACS61515.1| DNA-cytosine methyltransferase [Ralstonia pickettii 12D]
          Length = 398

 Score = 40.7 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           + A ++GVPQRR R++++   N  ++F 
Sbjct: 199 LDARNYGVPQRRVRVFVLGVRND-IDFD 225


>gi|270157659|ref|ZP_06186316.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
 gi|269989684|gb|EEZ95938.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
          Length = 414

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE---EHIDDKST 52
           ++A    VPQ+RERL II           +P        L   L+   E    K T
Sbjct: 222 LRAQYLDVPQKRERLVIIGIRKDLQGNIAYPREQDYTVSLRQALQNVPESPGQKYT 277


>gi|228950066|ref|ZP_04112251.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809593|gb|EEM56029.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 445

 Score = 40.7 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           M+A D+GVPQ RER+ +I   +    F     L     LG++L++    +  
Sbjct: 165 MQAHDYGVPQLRERVIVIGTKSNINPFSVIPKLDGPRTLGEVLKDCPKSEFF 216


>gi|255591450|ref|XP_002535514.1| cytosine-specific methyltransferase, putative [Ricinus communis]
 gi|223522828|gb|EEF26867.1| cytosine-specific methyltransferase, putative [Ricinus communis]
          Length = 206

 Score = 40.7 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 9   PQRRERLYIIDFLNPS 24
           PQ RER+ I+ F   +
Sbjct: 190 PQHRERIIIVGFRGKT 205


>gi|127416|sp|P10283|MTB1_BREEP RecName: Full=Modification methylase BepI; Short=M.BepI; AltName:
           Full=Cytosine-specific methyltransferase BepI
 gi|580766|emb|CAA31907.1| unnamed protein product [Brevibacterium epidermidis]
          Length = 403

 Score = 40.7 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 23/96 (23%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK--------------FPTP-------LGIKP-- 37
           + A ++GV Q RER+  I         K              +P P         +KP  
Sbjct: 202 LNAKNYGVAQNRERVIFIGISKRYANKKILDELISLQEKSEVYPYPPYTHGTDPELKPYA 261

Query: 38  RLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGK 73
            L  IL    + +   ++K  + + K K   K  G 
Sbjct: 262 TLNQILAHLPEPELASTDKSQQSYSKAKLFKKTQGN 297


>gi|218848105|ref|YP_002454768.1| DNA-cytosine methyltransferase [Bacillus cereus G9842]
 gi|218546236|gb|ACK98629.1| DNA-cytosine methyltransferase [Bacillus cereus G9842]
          Length = 438

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           M+A D+GVPQ RER+ +I   +    F     L     LG++L++    +  
Sbjct: 158 MQAHDYGVPQLRERVIVIGTKSNINPFSVIPKLDGPRTLGEVLKDCPKSEFF 209


>gi|86141746|ref|ZP_01060270.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831309|gb|EAQ49765.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 410

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPT--PLGIKPRLGDIL---------EEHIDDK 50
           K+  FGV Q+R R+ +I +      F++P+   +  K  L  IL         E++   K
Sbjct: 196 KSEHFGVLQKRRRIILIGW-QKGFSFQYPSFTKVKEKYTLDQILSDLKKLKPGEQNNVTK 254

Query: 51  ST--ISNKLWEGHQK 63
            T  I+  L +   +
Sbjct: 255 YTGQITPYLEKYELR 269


>gi|159025987|emb|CAO87894.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 329

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKST--ISNK 56
           + +  F +PQ R R +++ F        F+FP P   +  +  I+   +    +  IS K
Sbjct: 142 IDSKYFQIPQSRPRFFLLAFRKDLGIKNFQFPQPCHAEVGIEKII---VPGDYSIPISEK 198

Query: 57  LWEGHQKRK 65
             +      
Sbjct: 199 WQQYIDYYA 207


>gi|34451612|gb|AAQ72361.1| BsaWI methylase [Geobacillus stearothermophilus]
          Length = 411

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP-----TPLGIKPRLGDILEEHIDDKSTIS 54
           + A DFGVPQ RER +I+      ++ + P       + ++    D+ EE    K TI+
Sbjct: 160 LNAEDFGVPQSRERFFILA-SREKLDLRVPVAKNRKIVTVEEAFIDLPEE---PKETIN 214


>gi|294084926|ref|YP_003551686.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664501|gb|ADE39602.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 393

 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-----------SVEFKFPTPLGIKPRLGDIL 43
           +KA  +GVPQRRER+++I                 ++  FP      P + D L
Sbjct: 197 LKAHHYGVPQRRERMFVIGVRKDICEKIGIKEEVEIKKLFPIGSSYAPSVSDAL 250


>gi|22091184|ref|NP_665998.1| M.PhiCh1-II [Natrialba phage PhiCh1]
 gi|289594296|ref|YP_003482303.1| DNA-cytosine methyltransferase [Natrialba magadii ATCC 43099]
 gi|22003505|gb|AAM88754.1|AF440695_80 putative C5-cytosine methyltransferase [Natrialba phage PhiCh1]
 gi|289533393|gb|ADD07741.1| DNA-cytosine methyltransferase [Natrialba magadii ATCC 43099]
          Length = 283

 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 2   KACDFGVPQRRERLYIID 19
            A D+GVPQ RER+ +I 
Sbjct: 189 DAADYGVPQHRERVLVIG 206


>gi|182437151|ref|YP_001824870.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465667|dbj|BAG20187.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 363

 Score = 40.3 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A DFGVPQ R RL++I         + P P  
Sbjct: 174 LNAADFGVPQARPRLFLIGVPKGKKVPQHPDPTH 207


>gi|260890952|ref|ZP_05902215.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
 gi|260859505|gb|EEX74005.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
          Length = 452

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+GVPQ+RER+ I+ 
Sbjct: 154 LNAADYGVPQQRERVIIMG 172


>gi|299531463|ref|ZP_07044871.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
 gi|298720626|gb|EFI61575.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
          Length = 435

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A DFGVPQ R R++ + F       ++  P   +P  GD+
Sbjct: 263 LAAHDFGVPQARRRVFFVGFRAARDAARWAEP---EPTHGDV 301


>gi|159029905|emb|CAO90959.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 346

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKST--ISNK 56
           + +  F +PQ R R +++ F        F+FP P   +  +  I+   +    +  IS K
Sbjct: 159 IDSKYFQIPQSRPRFFLLAFRKDLGIKNFQFPQPCHAEVGIEKII---VPGDYSIPISEK 215

Query: 57  LWEGHQKRK 65
             +      
Sbjct: 216 WQQYIDYYA 224


>gi|37693466|dbj|BAC99051.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1344

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + A ++GVPQ R+R++II  L   V   +P P+  
Sbjct: 1006 LNAGNYGVPQSRKRVFIIAALPEEVLPNWPRPMHS 1040


>gi|20278869|dbj|BAB91073.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1344

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + A ++GVPQ R+R++II  L   V   +P P+  
Sbjct: 1006 LNAGNYGVPQSRKRVFIIAALPEEVLPNWPRPMHS 1040


>gi|229061562|ref|ZP_04198906.1| C5 methyltransferase alpha subunit [Bacillus cereus AH603]
 gi|228717796|gb|EEL69446.1| C5 methyltransferase alpha subunit [Bacillus cereus AH603]
          Length = 353

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 1   MKACDFG---VPQRRERLYIID 19
           + + D G   VPQ RER++II 
Sbjct: 134 LNSKDIGPKPVPQNRERVFIIG 155


>gi|303328045|ref|ZP_07358484.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
 gi|302861871|gb|EFL84806.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
          Length = 417

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
             FG+PQ RER++++     ++EF+      I   +  IL
Sbjct: 151 KQFGIPQNRERVFVVASKRHAIEFE--DRPEIACDVNSIL 188


>gi|307293581|ref|ZP_07573425.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306879732|gb|EFN10949.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score = 40.3 bits (94), Expect = 0.097,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKF 29
           A DFGVPQ RER++        ++F F
Sbjct: 153 AADFGVPQTRERVFFFG-TRDDIKFPF 178


>gi|332710136|ref|ZP_08430089.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332351094|gb|EGJ30681.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 370

 Score = 40.3 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 6   FGVPQRRER-LYIIDFLNPSVEFKFPTPLGIKPR---LGDI 42
           FGVPQ R R ++I  F      F +PTP    P    LGD+
Sbjct: 153 FGVPQTRRRFIFIASFDRFPSGFHWPTPEPDTPASVYLGDL 193


>gi|296163057|ref|ZP_06845831.1| C-5 cytosine-specific DNA methylase [Burkholderia sp. Ch1-1]
 gi|295886701|gb|EFG66545.1| C-5 cytosine-specific DNA methylase [Burkholderia sp. Ch1-1]
          Length = 304

 Score = 40.3 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + A D GVPQ R+RL+++     +       PL     + D++E
Sbjct: 141 IDAADHGVPQHRKRLFLVC-TRSAAPIGLELPLRDHRPIRDVIE 183


>gi|17231665|ref|NP_488213.1| cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|8453097|gb|AAF75232.1|AF220508_2 cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17133308|dbj|BAB75872.1| cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 385

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A ++GVPQ RER+ ++ F    + 
Sbjct: 172 INAIEYGVPQDRERIILLGFSKSFIH 197


>gi|255530844|ref|YP_003091216.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255343828|gb|ACU03154.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
          Length = 350

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 22/74 (29%)

Query: 1   MKACDFGVPQRRERLYIID-----------------FLNPSVEFKFPTPLGIKPRLGDIL 43
           +    FG+PQRR R++ +                  F N          L     + DIL
Sbjct: 156 LDTQSFGLPQRRSRIFFVCSKKELEIELTEEAIVRNFNNIDHH-----GLHTYSNVLDIL 210

Query: 44  EEHIDDKSTISNKL 57
            +  D K  +S K+
Sbjct: 211 GKDADQKYYLSEKI 224


>gi|240143787|ref|ZP_04742388.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
           intestinalis L1-82]
 gi|257204222|gb|EEV02507.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
           intestinalis L1-82]
          Length = 333

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE-FKFPTP---LGIKPRLGDILEEHIDDKSTI 53
            +  + V Q RER YI    +   +  + P         P+L   L++++ ++  I
Sbjct: 180 NSKFWNVAQNRERYYIAATRDDLPDVLQMPAQNEDPENVPKLSLFLDDNVPERFYI 235


>gi|257887107|ref|ZP_05666760.1| site-specific DNA-methyltransferase [Enterococcus faecium
           1,141,733]
 gi|257823161|gb|EEV50093.1| site-specific DNA-methyltransferase [Enterococcus faecium
           1,141,733]
          Length = 360

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + DFGVPQ RER +I  
Sbjct: 163 LNSLDFGVPQDRERFFIFG 181


>gi|85710855|ref|ZP_01041916.1| DNA modification methylase M.NGOI [Idiomarina baltica OS145]
 gi|85695259|gb|EAQ33196.1| DNA modification methylase M.NGOI [Idiomarina baltica OS145]
          Length = 345

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEHIDDK 50
           +  FGVPQ R R  ++         FK+P P      +G+ L + +  K
Sbjct: 163 SSQFGVPQLRPRTILVALRPEVASHFKWPQPQSKIVTVGEALGDLMASK 211


>gi|167042310|gb|ABZ07039.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
           crenarchaeote HF4000_ANIW97J3]
          Length = 380

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+GVPQ R+R +I+ 
Sbjct: 165 LNAADYGVPQIRKRAFIVG 183


>gi|190892898|ref|YP_001979440.1| DNA-cytosine methyltransferase [Rhizobium etli CIAT 652]
 gi|190698177|gb|ACE92262.1| putative DNA-cytosine methyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 638

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)

Query: 3   ACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-LGIKPRLGDILEEHIDDKSTISNKLWEG 60
           A D+G+ Q R R+ II         F+ P      +  LGD+L   +D    ++   WEG
Sbjct: 425 AEDYGLAQERSRVLIIGIRRDLGTAFRMPPTFPQRRTNLGDVL---VD---LMAANGWEG 478

Query: 61  HQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
             +     +            E++A  +T+  R  K
Sbjct: 479 AYEWARERR------------ESNAIASTIVTRRGK 502


>gi|297159178|gb|ADI08890.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 386

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLG---------IKPRLGDILEEHIDDK 50
           ++ACD+GVPQ R R  ++         F++  P           + P +    E+  D +
Sbjct: 163 LEACDYGVPQLRPRAILVAMREEYAQHFQWTDPEEGALVTVAQALAPSMRKRFEDSGDPR 222

Query: 51  STISNKLWEGHQKRKENNKIAG 72
                  WE   +R       G
Sbjct: 223 -------WEIFYERWLKEAEKG 237


>gi|145218897|ref|YP_001129606.1| DNA-cytosine methyltransferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145205061|gb|ABP36104.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM 265]
          Length = 467

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE 26
           A D+G+PQ R R+ ++      ++
Sbjct: 215 AKDYGIPQNRPRVLLVGLRKDIIK 238


>gi|242237482|ref|YP_002985663.1| DNA-cytosine methyltransferase [Dickeya dadantii Ech703]
 gi|242129539|gb|ACS83841.1| DNA-cytosine methyltransferase [Dickeya dadantii Ech703]
          Length = 465

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 2   KACDFGVPQRRERLYIIDFLN------------PSVEFKFPTPLGIKPRLGDIL------ 43
            A +FG PQ RER+ II   N                F+ P    ++  + D+       
Sbjct: 247 NAANFGTPQIRERVIIICSRNGKTPPYLTPTHSDDPYFELPHWNTLESSISDLKNHDHLN 306

Query: 44  EEHIDDKST--ISN-KLWEGHQKRKENNKIAGKGFGYG 78
                 K    +   + W+   +  +  +  GK F  G
Sbjct: 307 FPEKRLKYYRMLKPGQNWKNLPEYLQK-EAMGKSFYSG 343


>gi|84686808|ref|ZP_01014695.1| DNA methylase, C-5 cytosine-specific family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665239|gb|EAQ11718.1| DNA methylase, C-5 cytosine-specific family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 336

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE--FKFPTPLGIKP 37
           + A  FGVPQ R R  II       +    FP P+   P
Sbjct: 88  LYAPHFGVPQTRWRTVIIGIRGDQADPLRAFPEPVRNAP 126


>gi|238765010|ref|ZP_04625947.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238696779|gb|EEP89559.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 338

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 1   MKACDFGVPQRRERLYIIDFL------NPSVEFKFPTPLGIKPRLGDILEEHIDDKSTIS 54
           +   D+GVPQ R+R+  I         N    F  PTP    P     L   +  K  IS
Sbjct: 150 LNTADYGVPQTRKRVIAIGVKAELFDINQLPAFP-PTPTHCSPDKNSALPAWVTVKDAIS 208

Query: 55  N 55
           +
Sbjct: 209 D 209


>gi|310819714|ref|YP_003952072.1| cytosine-specific methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392786|gb|ADO70245.1| Cytosine-specific methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 421

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A  +GVPQ R+RL I+   +  V F  P+P  
Sbjct: 165 VNAASYGVPQLRKRLIIVGARDGKV-FNVPSPTH 197


>gi|213964765|ref|ZP_03392965.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
 gi|213952958|gb|EEB64340.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
          Length = 333

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDIL 43
           A + GVPQ R R  ++         F +P P G  P +G+ L
Sbjct: 155 ASEHGVPQLRPRFVLVAVKQEYAPFFHWPEPQGEAPTVGETL 196


>gi|187736717|ref|YP_001840974.1| hypothetical protein pEspB_p20 [Exiguobacterium arabatum]
 gi|183223750|emb|CAQ35235.1| m5C DNA methyltransferase M.Lsp1109I [Exiguobacterium arabatum]
          Length = 377

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 6   FGVPQRRERLYIIDFLNP----SVEFKFPTPLGI 35
           +GVPQ R R+ I+          +EFK P PL  
Sbjct: 168 YGVPQARHRIIIVGIRKDLAEQGIEFKVPAPLNT 201


>gi|294084868|ref|YP_003551628.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664443|gb|ADE39544.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 538

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 20/72 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK-------------PRLGDILEEHI 47
           +K+ DFG+PQ R RL I+         K P  L                PRL   L +  
Sbjct: 255 LKSEDFGIPQTRHRLIIVGIREDIQ--KIPDSLVPNEKTYTVQDAISDLPRLRSGLSKEK 312

Query: 48  DDKSTISNKLWE 59
           DD      KLW+
Sbjct: 313 DD-----AKLWK 319


>gi|288958310|ref|YP_003448651.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
 gi|288910618|dbj|BAI72107.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
          Length = 375

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A DFGVPQ+R+R  II           PT    
Sbjct: 171 LHAADFGVPQKRQRAIIIGSRVGKPRLPMPTHQQK 205


>gi|218244975|ref|YP_002370346.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165453|gb|ACK64190.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 423

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8   VPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDD 49
           VPQ+RER+ II   N  ++   FPTP      L + L+   D 
Sbjct: 223 VPQKRERVVIIAVRNDLAIPALFPTPKNYTISLREALQNCPDS 265


>gi|322510825|gb|ADX06139.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 390

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + +  +  PQ R+R+YII   N + E+ F         +  I++  I D        ++ 
Sbjct: 227 IDSRYYNSPQSRQRIYIIC--NKNTEYIFREIKNPIVPVSTIIDNSITD-------FFDY 277

Query: 61  HQKRKEN 67
            +K K  
Sbjct: 278 TKKYKLE 284


>gi|325685522|gb|EGD27614.1| modification methylase BbvI [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 380

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 6   FGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKPR 38
           +GVPQ R R+ I+   N   E    F  P P    P 
Sbjct: 167 YGVPQMRHRIIIVGIRNDLAEQGIKFHVPAPTTPNPE 203


>gi|256390614|ref|YP_003112178.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
 gi|256356840|gb|ACU70337.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
          Length = 419

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 1   MKACDFGVPQRRERLYIIDFL 21
           + A +FGVPQ R R+ I+ F 
Sbjct: 199 VNAANFGVPQVRYRVIIVAFR 219


>gi|322510834|gb|ADX06148.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 344

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV------EFKFPTPLGIKPRLGDILEEHIDDK--ST 52
           +K  D+G+PQ R+RL I+   N +       +         +  L ++L ++ + K   T
Sbjct: 209 IKCSDYGLPQMRKRLIIVGVRNDTALINHIDKLLDLDEYKKETTLTELLGKNFEKKIAYT 268

Query: 53  I 53
           I
Sbjct: 269 I 269


>gi|257453711|ref|ZP_05618997.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
 gi|257448894|gb|EEV23851.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
          Length = 415

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 2   KACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDILEE 45
           KA  + VPQ+RERL II   N      +F  P+P      + D L+ 
Sbjct: 227 KAVFYKVPQKRERLIIIGVRNDLVAKAKFVKPSPYYRLLTVKDALQA 273


>gi|254465219|ref|ZP_05078630.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
 gi|206686127|gb|EDZ46609.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
          Length = 437

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DF VPQ R RL ++     +   ++P  +  +P   D L +  D ++   ++LW  
Sbjct: 155 LNAADFCVPQDRHRLILMGTKKGAKLPEYPKVISKRPTCEDALGDLPDAETF--DELWSS 212


>gi|116514211|ref|YP_813117.1| site-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093526|gb|ABJ58679.1| Site-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 380

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 6   FGVPQRRERLYIIDFLNPSVE----FKFPTPLGIKP 37
           +GVPQ R R+ I+   N   E    F  P P    P
Sbjct: 167 YGVPQMRHRIIIVGIRNDLAERGIKFHVPAPTTPNP 202


>gi|127439|sp|P05302|MTD1_DESNO RecName: Full=Modification methylase DdeI; Short=M.DdeI; AltName:
           Full=Cytosine-specific methyltransferase DdeI
 gi|79418|pir||S00543 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) DdeI - Desulfovibrio desulfuricans
 gi|40795|emb|CAA68505.1| DdeI methylase [Desulfovibrio vulgaris]
          Length = 415

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + ACD+GVPQ R+R++ I 
Sbjct: 149 LNACDYGVPQSRQRVFFIG 167


>gi|228947350|ref|ZP_04109643.1| hypothetical protein bthur0007_34800 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812349|gb|EEM58677.1| hypothetical protein bthur0007_34800 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 290

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + +FGVPQ R+R++II  L      + FP
Sbjct: 137 LNSREFGVPQSRDRVFIIGHLRGHSRREVFP 167


>gi|229100187|ref|ZP_04231087.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
 gi|228683229|gb|EEL37207.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
          Length = 306

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
           + + +FGVPQ R+R++II  L      + FP
Sbjct: 153 LNSREFGVPQSRDRVFIIGHLRGHSRREVFP 183


>gi|239624728|ref|ZP_04667759.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521114|gb|EEQ60980.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 554

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           + A  +G PQRRER  I+        ++  P  
Sbjct: 342 LNAIHYGAPQRRERFIIVGLKKEMDAKYTAPEI 374


>gi|228964036|ref|ZP_04125166.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795688|gb|EEM43165.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 478

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + + DFGVPQ+R+R+ II      +E  +P 
Sbjct: 181 LNSADFGVPQQRKRVVIIA-NKHGIENTYPK 210


>gi|333024772|ref|ZP_08452836.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332744624|gb|EGJ75065.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 324

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIK-PRLGDILEEHIDDK 50
           + A DFGV QRRE  +++         F +P PL    P LG+ L   +  +
Sbjct: 149 LDAKDFGVSQRREHGFLVAMSGERMKRFSWPVPLATPCPTLGETLRASMGAR 200


>gi|269792571|ref|YP_003317475.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100206|gb|ACZ19193.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 350

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 6   FGVPQRRERLYIIDFLNP-SVEFKFPTP 32
           +G+PQ R R+ I+   N  +V FK P+P
Sbjct: 160 YGIPQARHRIIIVGIRNDINVTFKVPSP 187


>gi|113478170|ref|YP_724231.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169218|gb|ABG53758.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 379

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
              D+GVPQ RER+ ++        F F   +   P  G      I  K T
Sbjct: 159 NFADYGVPQFRERVILVGIR-MDTGFNF---IHPSPEYG------IGRKYT 199


>gi|218134945|ref|ZP_03463749.1| hypothetical protein BACPEC_02850 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990330|gb|EEC56341.1| hypothetical protein BACPEC_02850 [Bacteroides pectinophilus ATCC
           43243]
          Length = 416

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDIL 43
           + A DFGV Q R+R+ I+ +L  +  +++P+   +  K  + D+L
Sbjct: 202 LNAQDFGVLQSRKRVIIVGWLKGT-GYEYPSFDVIHSKAEVWDLL 245


>gi|293407987|ref|ZP_06651827.1| modification methylase NmeDIP [Escherichia coli B354]
 gi|301328020|ref|ZP_07221181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|291472238|gb|EFF14720.1| modification methylase NmeDIP [Escherichia coli B354]
 gi|300845467|gb|EFK73227.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 379

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + + ++G PQ RER+ ++ F N ++   F
Sbjct: 166 INSIEYGAPQDRERIILLGFQNKNLTKSF 194


>gi|210610975|ref|ZP_03288684.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
 gi|210152200|gb|EEA83207.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
          Length = 423

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDIL 43
           + A DFGV Q R+R+ I+ +L  +  +++P+   +  K  + D+L
Sbjct: 202 LNAQDFGVLQSRKRVIIVGWLKGT-GYEYPSFDVIHSKAEVWDLL 245


>gi|18313899|ref|NP_560566.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
           IM2]
 gi|18161467|gb|AAL64748.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
           IM2]
          Length = 463

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 5   DF---GVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           DF   GVPQ+RERL II      +          +  +   L + +  K  ++ 
Sbjct: 186 DFAAAGVPQKRERLIIIGIRRDLIR-SAEQIWHARAVIDRALRKTVFAKFPLTP 238


>gi|303236370|ref|ZP_07322960.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483428|gb|EFL46433.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 415

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVE 26
            DFG+PQ R R+ I+     +  
Sbjct: 188 ADFGIPQHRRRVIIVGIRLDTFG 210


>gi|15828514|ref|NP_325874.1| CpG DNA methylase (cytosine-specific methyltransferase) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089456|emb|CAC13216.1| CPG DNA METHYLASE (CYTOSINE-SPECIFIC METHYLTRANSFERASE) [Mycoplasma
           pulmonis]
          Length = 296

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + + D+   Q R+R +++   + S +FK+P     K  L  +L    ++K T
Sbjct: 116 LNSADYNSCQNRQRFFMVSSFDLS-KFKWPEKRSRKKDLSTLL----NNKYT 162


>gi|313124726|ref|YP_004034985.1| modification methyltransferase, cytosine-specific [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
 gi|312281289|gb|ADQ62008.1| Modification methyltransferase, cytosine-specific [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
          Length = 284

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 2  KACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           A DFGV Q R R+ I+ +L  + +  +P 
Sbjct: 62 NAQDFGVLQNRRRMIIVGWLK-NSDLAYPD 90


>gi|169825537|ref|YP_001695712.1| modification methylase [Lysinibacillus sphaericus C3-41]
 gi|168994814|gb|ACA42353.1| Modification methylase [Lysinibacillus sphaericus C3-41]
          Length = 296

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE---EHIDDKSTISNKLWEGHQKR 64
           +PQ R+RL +I    P     +P    IK  + DI++   E    K     K  EGH + 
Sbjct: 155 LPQERKRLIVIGTKRPFNNLDYPESTPIK--MRDIIDVGTEVYTPKYV--QKRLEGHYRD 210

Query: 65  KENNKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
           K             +  +      T  A Y KD S
Sbjct: 211 KP------------IITDLDGIAPTCVAHYSKDRS 233


>gi|40063394|gb|AAR38205.1| C-5 cytosine-specific DNA methylase [uncultured marine bacterium
           580]
          Length = 435

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPL 33
           + A D+G+PQRR R++I  F   S    KF  P+
Sbjct: 181 INAADYGMPQRRRRVFIFAFKKSSALHKKFKKPI 214


>gi|309783383|ref|ZP_07678091.1| C-5 cytosine-specific DNA methylase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|330827391|ref|YP_004390629.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
           K601]
 gi|308917844|gb|EFP63533.1| C-5 cytosine-specific DNA methylase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|329312699|gb|AEB87113.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
           K601]
          Length = 304

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + A D GVPQ R+RL+++   +     +   P      + D+++
Sbjct: 141 VDAADHGVPQNRQRLFLVCTRSRRP-LRLSLPRREHRPIADVIQ 183


>gi|121582518|ref|YP_974050.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120608576|gb|ABM44315.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
          Length = 304

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
           + A D GVPQ R+RL+++   +     +   P      + D+++
Sbjct: 141 VDAADHGVPQNRQRLFLVCTRSRRP-LRLSLPRREHRPIADVIQ 183


>gi|88854619|ref|ZP_01129286.1| C-5 cytosine-specific DNA methylase family protein [marine
           actinobacterium PHSC20C1]
 gi|88816427|gb|EAR26282.1| C-5 cytosine-specific DNA methylase family protein [marine
           actinobacterium PHSC20C1]
          Length = 352

 Score = 39.1 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPRLGDIL 43
           + A D+G PQ R+R  II  L   P   F  PT  G    + ++L
Sbjct: 144 LNAADYGAPQARKRAVIIGHLKTLPFPGFPTPTHAGRHVPVKNVL 188


>gi|331091354|ref|ZP_08340194.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404515|gb|EGG84059.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 391

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 7   GVPQRRERLYIIDFLN----PSVEFKFPTPLGIKPRLGD--ILE-EHIDDKSTISNK 56
           GVPQ RER+ I+   +     ++  + P             ILE   +D+K  IS+ 
Sbjct: 154 GVPQFRERVVILGIHSSLGIQNLNIELPDKSKDDINFLTSGILETTDVDEKYYISSH 210


>gi|12229856|sp|P94147|MTA1_RUEGE RecName: Full=Modification methylase AgeI; Short=M.AgeI; AltName:
           Full=Cytosine-specific methyltransferase AgeI
 gi|8037880|gb|AAF71525.1|AF247972_2 AgeI methylase [Thalassobius gelatinovorus]
 gi|1695647|dbj|BAA11333.1| ageI metylase [Thalassobius gelatinovorus]
 gi|1588637|prf||2209243A AgeI methylase
          Length = 429

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + AC++GVPQ R R++I  
Sbjct: 150 LDACEYGVPQHRRRVFIFG 168


>gi|326564851|gb|EGE15057.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 103P14B1]
          Length = 288

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + +  FGVPQ+R R++++  L     F  
Sbjct: 160 LDSRYFGVPQKRRRVFLVAGLGKYPPFSL 188


>gi|18202059|sp|O52702|MTA1_ACEPA RecName: Full=Modification methylase ApaLI; Short=M.ApaLI; AltName:
           Full=Cytosine-specific methyltransferase ApaLI
 gi|2865599|gb|AAC97180.1| ApaLI methyltransferase [Acetobacter pasteurianus]
          Length = 429

 Score = 39.1 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           +    +GVPQ R+R+ II      ++F+FP  L
Sbjct: 151 VNLAAYGVPQTRKRVLIIG-NRLGIDFQFPEEL 182


>gi|331003101|ref|ZP_08326612.1| hypothetical protein HMPREF0491_01474 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412985|gb|EGG92361.1| hypothetical protein HMPREF0491_01474 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 356

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +   D+GVPQ R+RL +      +++  F   L  K 
Sbjct: 152 LNTADYGVPQVRKRLVLHGIKKENIDRNFKIQLPPKT 188


>gi|257058000|ref|YP_003135888.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256588166|gb|ACU99052.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 423

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8   VPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDD 49
           VPQ+RER+ II   N  ++   FPTP      L + L+   D 
Sbjct: 223 VPQKRERVVIIAVRNDLAIPALFPTPKNYTISLREALKNCPDS 265


>gi|1644234|dbj|BAA11339.1| ApaLI methylase [Acetobacter pasteurianus]
          Length = 429

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           +    +GVPQ R+R+ II      ++F+FP  L
Sbjct: 151 VNLAAYGVPQTRKRVLIIG-NRLGIDFQFPEEL 182


>gi|170084587|ref|XP_001873517.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651069|gb|EDR15309.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1273

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++A  +G PQRRER ++I  L+ +     P P    P+
Sbjct: 930 LQAAHYGTPQRRERFFLIAALDGTPLPALPQPTHDFPK 967


>gi|291539767|emb|CBL12878.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 337

 Score = 39.1 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 1   MKACDFGVPQRRERLYIIDF 20
           + A D+ VPQ RER+ I+  
Sbjct: 186 VNASDYSVPQNRERMIIVGV 205


>gi|326776070|ref|ZP_08235335.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
 gi|326656403|gb|EGE41249.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
          Length = 463

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFL 21
           + A D+G PQ R R+ I+ F 
Sbjct: 224 VNAADYGAPQVRNRVVIVAFR 244


>gi|254410214|ref|ZP_05023994.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183250|gb|EDX78234.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 392

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A   G+PQ R+R+ I+  L+   +  FP  
Sbjct: 148 VNAMHLGLPQNRQRVVILGTLDKDTKDDFPNI 179


>gi|240119361|dbj|BAH79224.1| methylase EcoO109IM [Escherichia coli O157:H7]
          Length = 414

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 1   MKACDFGVPQRRERLYIID--------FLNPSVEFKFPTPLGIKPRLGDIL--EEHIDDK 50
           + A ++G PQ RER+ +I         F +P    +    L     LGD++  E    DK
Sbjct: 175 VNAANYGAPQIRERVILIGNRFGMIANFASPLFSNRVEDNLPPFKTLGDVIGPESGFVDK 234

Query: 51  S----TISNKLWEGH 61
                  S +  +  
Sbjct: 235 YPEVMNFSPRKLKYL 249


>gi|189404646|ref|ZP_02809925.2| modification methylase SinI [Escherichia coli O157:H7 str. EC869]
 gi|189375083|gb|EDU93499.1| modification methylase SinI [Escherichia coli O157:H7 str. EC869]
          Length = 417

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 1   MKACDFGVPQRRERLYIID--------FLNPSVEFKFPTPLGIKPRLGDIL--EEHIDDK 50
           + A ++G PQ RER+ +I         F +P    +    L     LGD++  E    DK
Sbjct: 178 VNAANYGAPQIRERVILIGNRFGMIANFASPLFSNRVEDNLPPFKTLGDVIGPESGFVDK 237

Query: 51  S----TISNKLWEGH 61
                  S +  +  
Sbjct: 238 YPEVMNFSPRKLKYL 252


>gi|6318608|gb|AAF06965.1|AF157599_4 EcoO109IM [Escherichia coli]
          Length = 414

 Score = 39.1 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 1   MKACDFGVPQRRERLYIID--------FLNPSVEFKFPTPLGIKPRLGDIL--EEHIDDK 50
           + A ++G PQ RER+ +I         F +P    +    L     LGD++  E    DK
Sbjct: 175 VNAANYGAPQIRERVILIGNRFGMIANFASPLFSNRVEDNLPPFKTLGDVIGPESGFVDK 234

Query: 51  S----TISNKLWEGH 61
                  S +  +  
Sbjct: 235 YPEVMNFSPRKLKYL 249


>gi|300868938|ref|ZP_07113543.1| putative modification methylase NmeDIP [Oscillatoria sp. PCC 6506]
 gi|300333061|emb|CBN58735.1| putative modification methylase NmeDIP [Oscillatoria sp. PCC 6506]
          Length = 399

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A ++GVPQ R+R+ ++ F    ++
Sbjct: 172 INAIEYGVPQDRDRIILLGFRKDLIK 197


>gi|261225387|ref|ZP_05939668.1| C-5 cytosine-specific DNA methylase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255360|ref|ZP_05947893.1| C-5 cytosine-specific DNA methylase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|323182002|gb|EFZ67413.1| modification methylase XorII [Escherichia coli 1357]
          Length = 401

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 1   MKACDFGVPQRRERLYIID--------FLNPSVEFKFPTPLGIKPRLGDIL--EEHIDDK 50
           + A ++G PQ RER+ +I         F +P    +    L     LGD++  E    DK
Sbjct: 162 VNAANYGAPQIRERVILIGNRFGMIANFASPLFSNRVEDNLPPFKTLGDVIGPESGFVDK 221

Query: 51  S----TISNKLWEGH 61
                  S +  +  
Sbjct: 222 YPEVMNFSPRKLKYL 236


>gi|127487|sp|P09795|MTS1_SALIN RecName: Full=Modification methylase SinI; Short=M.SinI; AltName:
           Full=Cytosine-specific methyltransferase SinI
 gi|79032|pir||A32008 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella sp
 gi|154350|gb|AAA27212.1| modification methylase (M.SinI) [Salmonella enterica subsp.
           enterica serovar Infantis]
          Length = 461

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 24/97 (24%)

Query: 2   KACDFGVPQRRERLYIID--------FLNP----SVEFKFPTPLGIK---PRLGDILEEH 46
            + +FGVPQ RER+ II         FL P      E+  P  + ++     L +I  EH
Sbjct: 247 NSANFGVPQIRERVIIICSRDGSRVPFLQPTHSEKGEYGLPKWITLRETITNLKNITHEH 306

Query: 47  I-----DDKST--ISN-KLWEGHQKRKENNKIAGKGF 75
           +       K    +   + W+   +  +  +  GK F
Sbjct: 307 VLFPEKRLKYYRLLKEGQYWKHLPEDLQK-EALGKSF 342


>gi|309790027|ref|ZP_07684601.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
 gi|308227882|gb|EFO81536.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 438

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + A D+GVPQRR+RL+I          ++P  
Sbjct: 211 LNAVDYGVPQRRQRLFIQG-NRLGQNIRWPKI 241


>gi|228911341|ref|ZP_04075144.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
 gi|228848278|gb|EEM93129.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
          Length = 236

 Score = 39.1 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)

Query: 1   MKACDFG-----VPQRRERLYIID 19
           +   DF      VPQ RER++II 
Sbjct: 151 LNTKDFSTAARPVPQNRERVFIIG 174


>gi|69244913|ref|ZP_00603103.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257883136|ref|ZP_05662789.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,502]
 gi|257891884|ref|ZP_05671537.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,410]
 gi|258616872|ref|ZP_05714642.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|289567034|ref|ZP_06447433.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium D344SRF]
 gi|293563825|ref|ZP_06678258.1| methyl transferase [Enterococcus faecium E1162]
 gi|294619669|ref|ZP_06699086.1| methyl transferase [Enterococcus faecium E1679]
 gi|68196079|gb|EAN10510.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257818794|gb|EEV46122.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,502]
 gi|257828244|gb|EEV54870.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,410]
 gi|289161170|gb|EFD09071.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium D344SRF]
 gi|291594089|gb|EFF25546.1| methyl transferase [Enterococcus faecium E1679]
 gi|291604195|gb|EFF33696.1| methyl transferase [Enterococcus faecium E1162]
          Length = 380

 Score = 39.1 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER+++I 
Sbjct: 147 LNSKAY-VPQNRERIFLIG 164


>gi|314942783|ref|ZP_07849602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium TX0133C]
 gi|314953681|ref|ZP_07856564.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium TX0133A]
 gi|313594323|gb|EFR73168.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium TX0133A]
 gi|313598474|gb|EFR77319.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium TX0133C]
          Length = 380

 Score = 38.7 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER+++I 
Sbjct: 147 LNSKAY-VPQNRERIFLIG 164


>gi|314994133|ref|ZP_07859442.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|313591442|gb|EFR70287.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
          Length = 250

 Score = 38.7 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1  MKACDFGVPQRRERLYIID 19
          + +  + VPQ RER+++I 
Sbjct: 17 LNSKAY-VPQNRERIFLIG 34


>gi|226330016|ref|ZP_03805534.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
 gi|225200811|gb|EEG83165.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
          Length = 325

 Score = 38.7 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPRLGDIL 43
           +KA  + VPQ+RERL +I        S+ + +P+P      + D L
Sbjct: 120 LKAIFYQVPQKRERLILIAIRKDLVNSINYTWPSPYHKVMTMRDAL 165


>gi|313123965|ref|YP_004034224.1| modification methylase rho11Si family protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280528|gb|ADQ61247.1| Modification methylase Rho11sI family protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 349

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV 25
              D+ +PQ RER+YI+  L    
Sbjct: 151 NTADY-LPQNRERVYIVGHLRKKN 173


>gi|323143137|ref|ZP_08077837.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322417087|gb|EFY07721.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 541

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A DFGVPQ+RER  ++   +   +
Sbjct: 318 LCAADFGVPQKRERFVVMGVNSDISD 343


>gi|314998281|ref|ZP_07863147.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313587745|gb|EFR66590.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
           TX0133a01]
          Length = 171

 Score = 38.7 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER+++I 
Sbjct: 147 LNSKAY-VPQNRERIFLIG 164


>gi|260559315|ref|ZP_05831497.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium C68]
 gi|261207983|ref|ZP_05922662.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium TC 6]
 gi|260074675|gb|EEW62995.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium C68]
 gi|260077782|gb|EEW65494.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium TC 6]
          Length = 331

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER+++I 
Sbjct: 98  LNSKAY-VPQNRERIFLIG 115


>gi|281420885|ref|ZP_06251884.1| modification methylase DdeI [Prevotella copri DSM 18205]
 gi|281405177|gb|EFB35857.1| modification methylase DdeI [Prevotella copri DSM 18205]
          Length = 624

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + + ++GVPQ RER+  I   N  
Sbjct: 365 LLSSNYGVPQNRERVVFIGCRNDQ 388


>gi|331035537|gb|AEC53094.1| DNA-cytosine methyltransferase [Synechococcus phage S-CRM01]
          Length = 381

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 1   MKACDFGVPQRRER-LYI---------ID--FLNPSVEFKFPTPLGIKPRLGDILEEHID 48
           M AC  GVPQ R+R ++I         +   FLN S  F  P   G K   G+ +   ++
Sbjct: 190 MNACRHGVPQNRQRVIFIAVRQDIAEKVGMTFLNISSLF--PPESGTKMTFGEGMVGLVN 247

Query: 49  D 49
           D
Sbjct: 248 D 248


>gi|168697993|ref|ZP_02730270.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 489

 Score = 38.7 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A  FGVPQRR R++++ +L  
Sbjct: 142 LDAQHFGVPQRRRRVFVVGYLGD 164


>gi|229008070|ref|ZP_04165613.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
 gi|228753185|gb|EEM02680.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
          Length = 184

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)

Query: 1   MKACDFG-----VPQRRERLYIID 19
           +   DF      VPQ RER++II 
Sbjct: 101 LNTKDFSTATRPVPQNRERVFIIG 124


>gi|226945654|ref|YP_002800727.1| C-5 cytosine-specific DNA methylase [Azotobacter vinelandii DJ]
 gi|226720581|gb|ACO79752.1| C-5 cytosine-specific DNA methylase [Azotobacter vinelandii DJ]
          Length = 501

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF--KFPTPLG 34
           + A  +GVPQ RERL+++   + +++   +FP+P  
Sbjct: 199 LNAAFYGVPQLRERLFLVAV-DATLDVIPQFPSPTH 233


>gi|110834520|ref|YP_693379.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
           borkumensis SK2]
 gi|110647631|emb|CAL17107.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
           borkumensis SK2]
          Length = 308

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 5   DFGVPQRRERLYIIDFLNPSVE-FKFPT 31
           DFGVPQ R+RL  +   +   E F FP 
Sbjct: 141 DFGVPQERKRLIFVGVRSDLGEVFAFPE 168


>gi|303285300|ref|XP_003061940.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456351|gb|EEH53652.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 341

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 30/116 (25%)

Query: 8   VPQRRERLYIIDFLNPSV---EFKFPTPL-GIKPRLGDIL-------------EEHIDDK 50
           VPQ R+R+Y++ F   +     F++P         + DIL             +  ++D 
Sbjct: 155 VPQSRKRVYLVGFRKDAALATPFRWPPRRDDCGGTVDDILEEEVEEESPDDGYDADVEDD 214

Query: 51  ----ST---ISNKLWEGHQKRKEN--NKIAGK-GFGYGLFFENSATTNTLSARYYK 96
                T   +S    +      +   ++     GF   LF E      TL A Y K
Sbjct: 215 DANVFTSCEVSEYQMDRASAYFKRVHHREPDHPGF---LFAETGGVARTLCASYRK 267


>gi|189500352|ref|YP_001959822.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides BS1]
 gi|189495793|gb|ACE04341.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides BS1]
          Length = 420

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP--RLGDILEE 45
           + A D+GV QRR+R+ ++        F +P P    P  ++ ++ E+
Sbjct: 198 LSASDYGVLQRRKRVILVGKKGRQTGF-YPEPQKWNPNVKVSEVFED 243


>gi|229547357|ref|ZP_04436082.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
           TX1322]
 gi|256854885|ref|ZP_05560249.1| predicted protein [Enterococcus faecalis T8]
 gi|307292237|ref|ZP_07572101.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|229307506|gb|EEN73493.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
           TX1322]
 gi|256710445|gb|EEU25489.1| predicted protein [Enterococcus faecalis T8]
 gi|306496743|gb|EFM66296.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|315028686|gb|EFT40618.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
          Length = 391

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A DFGVPQ R R +++   N  +E
Sbjct: 218 LNALDFGVPQSRSRTFMLSIRNKDIE 243


>gi|159477138|ref|XP_001696668.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
           reinhardtii]
 gi|158282893|gb|EDP08645.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 1263

 Score = 38.7 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + A ++GVPQ R+R++II  L   V   +P P+  
Sbjct: 916 LNAGNYGVPQSRKRMFIIAALPEEVLPNWPRPMHS 950


>gi|145294975|ref|YP_001137796.1| hypothetical protein cgR_0920 [Corynebacterium glutamicum R]
 gi|140844895|dbj|BAF53894.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 331

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           ++A +FGVPQ R+RL +I          +P P     ++
Sbjct: 129 LQAAEFGVPQSRKRLVLIGARKDVPLPVYPEPTHSARKI 167


>gi|291525775|emb|CBK91362.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 510

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 21/69 (30%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A  +GVPQRR R++++       +F            G+IL E        S+ +W  
Sbjct: 190 LDAQFWGVPQRRNRIFLV------ADF-------GGHSAGEILFE--------SDNVWRN 228

Query: 61  HQKRKENNK 69
           +QK++E  K
Sbjct: 229 YQKKREERK 237


>gi|307149806|ref|YP_003890849.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306986606|gb|ADN18484.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 645

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK 36
           + A DFGVPQ R+R +++   N    E   P  L I 
Sbjct: 164 LDAADFGVPQCRKRFFLVATNNLIPLELTLPKKLSIT 200


>gi|300861667|ref|ZP_07107751.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|300849128|gb|EFK76881.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 385

 Score = 38.7 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A DFGVPQ R R +++   N  +E
Sbjct: 212 LNALDFGVPQSRSRTFMLSIRNKDIE 237


>gi|312890850|ref|ZP_07750379.1| DNA-cytosine methyltransferase [Mucilaginibacter paludis DSM 18603]
 gi|311296633|gb|EFQ73773.1| DNA-cytosine methyltransferase [Mucilaginibacter paludis DSM 18603]
          Length = 336

 Score = 38.7 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIK-PRLGDILEEHIDD 49
           + + D+GV Q R R  ++       + F +P    +  P +G +L E I  
Sbjct: 155 INSSDYGVSQLRPRAILVALKKEYFDLFTWPEKNQLFVPSVGQLLFEEITS 205


>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 493

 Score = 38.7 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTI------- 53
           + A DFGVPQ R R  II   N  ++     P+G   ++   +E+ I D + +       
Sbjct: 126 LNAYDFGVPQTRSRTTIICHKNHPIKL----PIGNHKKVN--IEDAISDLNYLNSNQGEF 179

Query: 54  -SNKLWEGHQKRKENNKIAGKGFGYGLFFENSATT 87
            SN L E   + ++  +         +   +S   
Sbjct: 180 ESNYLLEPKSEYQKMMRKNSNKLYNHITTNHSKIA 214


>gi|2894387|emb|CAA74997.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
           (C2) [Bacillus pumilus]
          Length = 392

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 1   MKACDFGVPQRRERLYII-----DFLNPSVEFKFPTPLGIKPRLGDILEE 45
           +   DFGVPQ R+R+++I      F+   +  ++      K  +G+ LE+
Sbjct: 152 LNTSDFGVPQGRQRVFVIAARNEAFIPLEIIGEYTQGKKAKRTVGEALED 201


>gi|311899150|dbj|BAJ31558.1| putative modification methylase [Kitasatospora setae KM-6054]
          Length = 430

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK-PRLGDILEEHIDDKSTISN 55
           ++A  FGVPQ R R  ++         F +P     +   + D L++ +  +  ++ 
Sbjct: 173 LEAASFGVPQLRPRAILVAIRKDLYRGFTWPKRTEAEGRTVFDALDKSMRKRFGMNP 229


>gi|298206640|ref|YP_003714819.1| site-specific DNA-methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83849270|gb|EAP87138.1| site-specific DNA-methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 735

 Score = 38.7 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS 24
            A ++GVPQ RER+  I      
Sbjct: 470 NASNYGVPQNRERVLFIGCRKDQ 492


>gi|332655061|ref|ZP_08420802.1| modification methylase NgoFVII (Cytosine-specificmethyltransferase
           NgoFVII) (M.NgoFVII) (M.NgoVII) [Ruminococcaceae
           bacterium D16]
 gi|332515921|gb|EGJ45530.1| modification methylase NgoFVII (Cytosine-specificmethyltransferase
           NgoFVII) (M.NgoFVII) (M.NgoVII) [Ruminococcaceae
           bacterium D16]
          Length = 369

 Score = 38.7 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
              ++GVPQ RER+  +        F F  P       G++
Sbjct: 158 NFAEYGVPQFRERVLFVGVR-IDTGFNFVHPKPTHGPNGEL 197


>gi|172038906|ref|YP_001805407.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171700360|gb|ACB53341.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 427

 Score = 38.7 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 15/59 (25%)

Query: 1   MKACDFGVPQRRERLYIID------------F---LNPSVEFKFPTPLGIKPRLGDILE 44
           + A ++GVPQ RERL+++             F    N       P    +K  + D+ E
Sbjct: 157 LNAANYGVPQLRERLFLLGAKQGLKLPNYPDFVTKYNQQDNLSLPLTPTVKDAIQDLPE 215


>gi|149373121|ref|ZP_01892009.1| site-specific DNA-methyltransferase [unidentified eubacterium
           SCB49]
 gi|149354269|gb|EDM42838.1| site-specific DNA-methyltransferase [unidentified eubacterium
           SCB49]
          Length = 735

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS 24
            A ++GVPQ RER+  I      
Sbjct: 470 NASNYGVPQNRERVLFIGCRKDQ 492


>gi|91976449|ref|YP_569108.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91682905|gb|ABE39207.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A  FG PQ R R++++ +   
Sbjct: 171 LNARYFGSPQSRSRVFMVAWRGD 193


>gi|260890544|ref|ZP_05901807.1| hypothetical protein GCWU000323_01722 [Leptotrichia hofstadii
           F0254]
 gi|260859786|gb|EEX74286.1| site-specific DNA-methyltransferase [Leptotrichia hofstadii F0254]
          Length = 425

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKS 51
           + +  +G   +RERL I+   N   +EF FP P  +      I + ++ +K 
Sbjct: 203 LNSAWYGAATKRERLIIVAVKNEIDIEFNFPKPKYMNKL---IYKSNLPEKY 251


>gi|159899163|ref|YP_001545410.1| C-5 cytosine-specific DNA methylase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892202|gb|ABX05282.1| C-5 cytosine-specific DNA methylase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 362

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A D+G PQ R+R+ I+           P P  
Sbjct: 296 VNAADYGTPQLRKRIIILGCKQDLGFVNLPLPTH 329


>gi|227524411|ref|ZP_03954460.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
          hilgardii ATCC 8290]
 gi|227088642|gb|EEI23954.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
          hilgardii ATCC 8290]
          Length = 193

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEF 27
          +   +FGVPQ R+RL ++        F
Sbjct: 4  INVKNFGVPQNRKRLVLLGSKKQQPNF 30


>gi|197105892|ref|YP_002131269.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
 gi|196479312|gb|ACG78840.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
          Length = 508

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG 34
           + A  +GVPQ RER+ +I       VE +FP P  
Sbjct: 198 LNAAFYGVPQMRERMILIATRRELGVEIRFPAPTH 232


>gi|68249825|ref|YP_248937.1| modification methylase BepI-like [Haemophilus influenzae 86-028NP]
 gi|68058024|gb|AAX88277.1| modification methylase BepI-like [Haemophilus influenzae 86-028NP]
 gi|309973261|gb|ADO96462.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae R2846]
          Length = 407

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A  +GVPQ RER+    F   ++  K    L  +
Sbjct: 205 LNAQFYGVPQSRERVIFFGFKKNALNKKALEELQKE 240


>gi|314940601|ref|ZP_07847733.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a04]
 gi|313640221|gb|EFS04802.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a04]
          Length = 289

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1  MKACDFGVPQRRERLYIID 19
          + +  + VPQ RER+++I 
Sbjct: 56 LNSKAY-VPQNRERIFLIG 73


>gi|228931114|ref|ZP_04094051.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828566|gb|EEM74265.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 221

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)

Query: 1   MKACDFG-----VPQRRERLYIID 19
           +   DF      VPQ RER++II 
Sbjct: 133 LNTRDFSTAERPVPQNRERVFIIG 156


>gi|255608013|ref|XP_002538828.1| cytosine-specific methyltransferase, putative [Ricinus communis]
 gi|223510238|gb|EEF23555.1| cytosine-specific methyltransferase, putative [Ricinus communis]
          Length = 209

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 14/57 (24%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISN 55
          + A DFGVPQ R RL ++              LG KP L   LE    +  K  ISN
Sbjct: 29 LDAADFGVPQHRRRLIVVA------------GLGWKPTLPVPLEGRALVSAKEAISN 73


>gi|160894869|ref|ZP_02075643.1| hypothetical protein CLOL250_02419 [Clostridium sp. L2-50]
 gi|156863300|gb|EDO56731.1| hypothetical protein CLOL250_02419 [Clostridium sp. L2-50]
          Length = 423

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP--LGIKPRLGDILEE 45
           + A +FGV Q R+R+ I+ +L  +  +++P+   +  K  + D+L++
Sbjct: 202 LNAQNFGVLQSRKRVIIVGWLKGT-GYEYPSFDVIHSKAEVWDLLKD 247


>gi|56899928|ref|YP_173301.1| phage-related DNA methylase, N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|56800362|gb|AAW31029.1| phage-related DNA methylase, N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 239

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)

Query: 1   MKACDFG-----VPQRRERLYIID 19
           +   DF      VPQ RER++II 
Sbjct: 151 LNTRDFSTAERPVPQNRERVFIIG 174


>gi|229847093|ref|ZP_04467198.1| modification methylase BepI-like protein [Haemophilus influenzae
           7P49H1]
 gi|229809922|gb|EEP45643.1| modification methylase BepI-like protein [Haemophilus influenzae
           7P49H1]
          Length = 395

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A  +GVPQ RER+    F   ++  K    L  +
Sbjct: 193 LNAQFYGVPQSRERVIFFGFKKNALNKKALEELQKE 228


>gi|325126553|gb|ADY85883.1| DNA-cytosine methyltransferase family protein [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 380

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 6   FGVPQRRERLYIIDFLNP-SVEF---KFPTPLGIKP 37
           +GVPQ R R+ I+   N  +V+F   + P P    P
Sbjct: 167 YGVPQMRHRIIIVGIRNDLAVKFIMSQLPAPTTPNP 202


>gi|288559285|ref|YP_003422771.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288541995|gb|ADC45879.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 342

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           + A + GVPQ+R+R+  I   +   + +FP P   K  + + L
Sbjct: 152 LDASEHGVPQKRKRVIFIG--SRIGDVEFPKPKDKKVSVMEAL 192


>gi|169834887|ref|YP_001715830.1| modification methylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408994|gb|ACA57404.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 284

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID---DKSTISNKLWEGHQKR 64
           +PQ+R+RL +I    P    K+P    IK  L D+LE+  +          K   G  + 
Sbjct: 144 LPQKRKRLILIGTKRPFDNLKYPESNPIK--LKDLLEDDPEIDIPNYVY--KRLNGAYRD 199

Query: 65  KENNKIAGKGFGYGLFFENSATTNTLSARYYKD 97
           K             +         T  A Y KD
Sbjct: 200 KP------------IISTPEGVAPTCVAHYSKD 220


>gi|90408525|ref|ZP_01216682.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
 gi|90310344|gb|EAS38472.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
          Length = 380

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MKACDFG-VPQRRERLYIIDFLNPSVEFKF 29
           +    +  +PQ RER++I+ FL  S   KF
Sbjct: 173 LNTKTYTTLPQNRERMFIVCFLKQSDADKF 202


>gi|225561042|gb|EEH09323.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus G186AR]
          Length = 650

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +   D+GVPQ R+RL I+          FP P    P
Sbjct: 467 LNCRDYGVPQSRQRLVILASGPGEPLPPFPKPTHTSP 503


>gi|89055349|ref|YP_510800.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
 gi|88864898|gb|ABD55775.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
          Length = 502

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 12/47 (25%)

Query: 1   MKACDF-------GVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           + A DF       GVPQ R R++++   N       PTP G  P + 
Sbjct: 220 LAARDFIVRAEEHGVPQARHRVFVVGIRND-----LPTPEGDMPLMP 261


>gi|238922584|ref|YP_002936097.1| modification methylase, putative [Eubacterium rectale ATCC 33656]
 gi|238874256|gb|ACR73963.1| modification methylase, putative [Eubacterium rectale ATCC 33656]
          Length = 433

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 1   MKACDFGVPQRRERLYII 18
           + A +FG+PQ+RER Y+I
Sbjct: 227 LNAQNFGIPQKRERAYMI 244


>gi|240280401|gb|EER43905.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus H143]
          Length = 651

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +   D+GVPQ R+RL I+          FP P    P
Sbjct: 468 LNCRDYGVPQSRQRLVILASGPGEPLPPFPKPTHTSP 504


>gi|255692343|ref|ZP_05416018.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
 gi|260621969|gb|EEX44840.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
           17565]
          Length = 297

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 8   VPQRRERLYIIDFLNPSVE---FKFPTP-LGIKPRLGDILEEH----IDDKSTISNKLWE 59
           +PQ RER+Y++  +        F FP P  G  P   D +  H    I            
Sbjct: 151 LPQNRERIYLVGRVADRCTGDVFPFPAPGGGNHPCRKDTVHSHTCGTITRNYYKQPNFGN 210

Query: 60  GHQK 63
               
Sbjct: 211 YLIN 214


>gi|239927639|ref|ZP_04684592.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291435979|ref|ZP_06575369.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338874|gb|EFE65830.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 387

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ R+R  +I      V    P P   K
Sbjct: 162 LNAADYGVPQTRQRAILIASRTRKV--TAPDPTHAK 195


>gi|218556814|ref|YP_002389728.1| putative modification methylase NmeDIP [Escherichia coli IAI1]
 gi|218363583|emb|CAR01240.1| putative modification methylase NmeDIP [Escherichia coli IAI1]
          Length = 379

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKF 29
           + + ++G PQ R+R+ +I FL+     +F
Sbjct: 166 INSIEYGAPQDRQRIILIGFLDEKYASQF 194


>gi|325096531|gb|EGC49841.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus H88]
          Length = 651

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +   D+GVPQ R+RL I+          FP P    P
Sbjct: 468 LNCRDYGVPQSRQRLVILASGPGEPLPPFPKPTHTSP 504


>gi|320007884|gb|ADW02734.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 660

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTPL--GIKPRLGDILEEHIDDKSTISNKLWEGHQK 63
           +GVPQ R+RL ++   N    F +   L    +  L D + +        + ++ +    
Sbjct: 205 YGVPQHRKRLILLA-RNDVERFSWRQELEQEQRTTLRDAIGDLPVLPVVPTERVGQRELP 263

Query: 64  RKENNKIAGKGFGYGL--FFENSATTNTLSARYYKDGSEI 101
             E ++++  GFG  +  +       + ++ R  KD +EI
Sbjct: 264 YDEPSELS--GFGKDMRKWARKDRVWDHMTRRVRKDDAEI 301


>gi|257386518|ref|YP_003176291.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257168825|gb|ACV46584.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 452

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + D+G+PQ R+RL+ I 
Sbjct: 172 LDSADYGIPQHRKRLFFIG 190


>gi|218460006|ref|ZP_03500097.1| DNA-cytosine methyltransferase [Rhizobium etli Kim 5]
          Length = 343

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           A DFG+PQ R R+ I+             P    PRL 
Sbjct: 202 AEDFGIPQARHRVIIVGVRRDIAS---RLPHWFSPRLK 236


>gi|182438469|ref|YP_001826188.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466985|dbj|BAG21505.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 317

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKP-RLGDILEEHIDDK 50
           + A DFGVPQ R++  ++   +   + F  P P   +   +G  L   +  +
Sbjct: 149 LNAADFGVPQDRKQGVLVALKDRYFDAFVPPAPTVTEHLPVGPALRSSVGAR 200


>gi|126657178|ref|ZP_01728344.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
 gi|126621449|gb|EAZ92160.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
          Length = 433

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 15/59 (25%)

Query: 1   MKACDFGVPQRRERLYIID------------F---LNPSVEFKFPTPLGIKPRLGDILE 44
           + A ++GVPQ RERL+++             F    N       PT   +K  + D+ E
Sbjct: 157 LNAANYGVPQLRERLFLLGAKQGLILPNYPNFVTQYNQQDNLFLPTTPNVKDAIQDLPE 215


>gi|331219056|ref|XP_003322205.1| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309301195|gb|EFP77786.1| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1194

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG-DILEEHIDDK 50
           ++A  FG PQ R R+      +     K P P    P  G  IL    D+K
Sbjct: 694 LQAAQFGSPQARRRIIFAGTRHGLTAIKLPEPTHHYPDEGLAILLPTNDEK 744


>gi|291539795|emb|CBL12906.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 251

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
          +   D+GVPQ R+RL +    N   +         K  L  
Sbjct: 34 LNCADYGVPQTRKRLVLHGIRNDVYQLLIQNQPNFKISLPS 74


>gi|193071751|ref|ZP_03052649.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|192954951|gb|EDV85456.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
          Length = 374

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF----KFPTPLGIKPRLGDILEEH 46
           +   D+GVPQ R+R   I       +      FP     +    D+    
Sbjct: 152 LNTADYGVPQTRKRTIAIGIKRELFDVHSIPAFPPAPTHRSPDKDVALPE 201


>gi|194335097|ref|YP_002016957.1| DNA-cytosine methyltransferase [Prosthecochloris aestuarii DSM 271]
 gi|194312915|gb|ACF47310.1| DNA-cytosine methyltransferase [Prosthecochloris aestuarii DSM 271]
          Length = 340

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           +   D+GVPQ R+RL ++   +     +   P   K  +  ++
Sbjct: 152 VNIKDYGVPQSRKRLVLVG--SRLAPLRIAEPTKKKKTVRQVI 192


>gi|310815193|ref|YP_003963157.1| DNA-cytosine methyltransferase [Ketogulonicigenium vulgare Y25]
 gi|308753928|gb|ADO41857.1| DNA-cytosine methyltransferase [Ketogulonicigenium vulgare Y25]
          Length = 555

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL---GIKPRLGDILEEHIDDKSTIS 54
           ++A  FGVPQRR R+ I+   +          +   G+   + D++E     +S IS
Sbjct: 281 VRAEAFGVPQRRHRVIIVGIRSDLAGRAADAEIAVSGMARTVRDVIETMPALRSGIS 337


>gi|313676237|ref|YP_004054233.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942935|gb|ADR22125.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 448

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + + D+GVPQ RER++ I    
Sbjct: 239 LHSADYGVPQSRERVFFIGIKK 260


>gi|302876801|ref|YP_003845434.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687484|ref|ZP_07629930.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579658|gb|ADL53670.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 406

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A ++ VPQ RER+ I+     
Sbjct: 185 INASEYSVPQNRERMIIVGIDKK 207


>gi|210630626|ref|ZP_03296529.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
 gi|210160401|gb|EEA91372.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
          Length = 402

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPLGIKPRLGDILE---EHIDDKSTISN 55
           +   ++GVPQRRER+ ++      V+ F+      I+ R   I       +D+   +  
Sbjct: 291 VNCANYGVPQRRERVIVLGAAQHVVDSFELAPITRIEVRTKSISRITNAGVDESYPLVP 349


>gi|149919032|ref|ZP_01907517.1| DNA-cytosine methyltransferase family protein [Plesiocystis
           pacifica SIR-1]
 gi|149820185|gb|EDM79604.1| DNA-cytosine methyltransferase family protein [Plesiocystis
           pacifica SIR-1]
          Length = 401

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + A D+GVPQ R+RL+++  +    +F  P+P  
Sbjct: 168 VNAADYGVPQFRQRLFVLASIEGK-DFSMPSPTH 200


>gi|119384793|ref|YP_915849.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
 gi|119374560|gb|ABL70153.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
          Length = 511

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL---GIKPRLGDILEEHIDDKSTIS 54
           ++A  FGVPQRR R+ I+   +          +   G+   + D++E     +S IS
Sbjct: 237 VRAEAFGVPQRRHRVIIVGIRSDLAGRAADAEIAVSGMARTVRDVIETMPALRSGIS 293


>gi|294629551|ref|ZP_06708111.1| modification methylase NaeI [Streptomyces sp. e14]
 gi|292832884|gb|EFF91233.1| modification methylase NaeI [Streptomyces sp. e14]
          Length = 328

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP-RLGDILEEHIDDK 50
           + A D+GVPQ R++  ++      +  F+ PTP   +P  +G  LE  +  +
Sbjct: 146 VNAVDYGVPQNRKQGLLVAVERRWAEAFRPPTPTVRQPMTVGAALEASMAAR 197


>gi|85706642|ref|ZP_01037734.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius sp. 217]
 gi|85668700|gb|EAQ23569.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius sp. 217]
          Length = 511

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           ++A +FGVPQRR R+ I+   + 
Sbjct: 237 VRAEEFGVPQRRHRVIIVGIRSD 259


>gi|154277578|ref|XP_001539629.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413214|gb|EDN08597.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 699

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +   D+GVPQ R+RL I+          FP P    P
Sbjct: 467 LNCRDYGVPQSRQRLVILASGPGEPLPPFPKPTHASP 503


>gi|120402107|ref|YP_951936.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119954925|gb|ABM11930.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 386

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 4   CDFGVPQRRERLYIIDFLNPSVEF--KFPTPLGIKPR-LGDILEEHI 47
            D GVPQ R+RL ++             P P    PR + + L+E+ 
Sbjct: 174 ADLGVPQHRDRLIVVGVRRDLGIRPPAIPRPFAGNPRTVREALDENP 220


>gi|186683285|ref|YP_001866481.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465737|gb|ACC81538.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 419

 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+GVPQ R+R++ + 
Sbjct: 161 LNASDYGVPQARKRVFFVA 179


>gi|327439466|dbj|BAK15831.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 286

 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +   G PQ RER++II 
Sbjct: 148 INSKHHGQPQNRERVFIIG 166


>gi|325679553|ref|ZP_08159133.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108840|gb|EGC03076.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 708

 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIK-PRLGDILEE 45
           + + D+GVPQ R+R ++I    +  +  + P P   K   + D + +
Sbjct: 499 LNSADYGVPQLRQRAIFI---CSKDIPIELPKPTAKKVTTVRDAIFD 542


>gi|257877766|ref|ZP_05657419.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus
           EC20]
 gi|257811932|gb|EEV40752.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus
           EC20]
          Length = 416

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKF 29
           +FGVPQ+R+R+ II     +    +
Sbjct: 189 EFGVPQKRKRVIIIGIRRDNDNLNY 213


>gi|67924379|ref|ZP_00517809.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67853772|gb|EAM49101.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 435

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           + + ++GVPQ RERL+++          +P+ +     + D
Sbjct: 157 LNSANYGVPQLRERLFLLGSKKGLNLPNYPSFITDYTHIND 197


>gi|327438866|dbj|BAK15231.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 392

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 5   DFGVPQRRERLYIIDFLNPSVE----FKFPTPLGI 35
           ++G+PQ R R+ I+       +    FK P P   
Sbjct: 167 EYGIPQARHRIIIVGIRKDLADEGIVFKVPAPTTP 201


>gi|154508844|ref|ZP_02044486.1| hypothetical protein ACTODO_01354 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798478|gb|EDN80898.1| hypothetical protein ACTODO_01354 [Actinomyces odontolyticus ATCC
           17982]
          Length = 355

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D+GVPQ R R++ + 
Sbjct: 157 LNAADYGVPQLRRRMFFVG 175


>gi|108763142|ref|YP_631786.1| DNA-cytosine methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467022|gb|ABF92207.1| DNA-cytosine methyltransferase [Myxococcus xanthus DK 1622]
          Length = 505

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPL 33
           + A  + VPQ RER +++     +  +  FP P 
Sbjct: 187 LNAASYDVPQMRERFFLVAVHKETRSDPSFPVPT 220


>gi|220930206|ref|YP_002507115.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000534|gb|ACL77135.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 719

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVE 26
           + A  FGVPQRR R+Y++  F + S  
Sbjct: 176 IDAQYFGVPQRRRRIYLVADFADRSAG 202


>gi|168485680|ref|ZP_02710188.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
           HaeIII) (M.HaeIII) [Streptococcus pneumoniae CDC1087-00]
 gi|183571278|gb|EDT91806.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
           HaeIII) (M.HaeIII) [Streptococcus pneumoniae CDC1087-00]
          Length = 363

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-----FKFPTPLGIKPRLGDIL 43
           +   D+GVPQ R+RL +       ++        P+         D+L
Sbjct: 152 LNTADYGVPQSRKRLVLHGIRKEILDNTNLTLNLPSKTHSNIPELDLL 199


>gi|313674498|ref|YP_004052494.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941196|gb|ADR20386.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 735

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS 24
            + ++GVPQ RER+  I      
Sbjct: 472 NSSNYGVPQNRERVLFIGCRKDQ 494


>gi|308062818|gb|ADO04706.1| site-specific DNA-methyltransferase [Helicobacter pylori Cuz20]
          Length = 418

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 214 LNSAWYGSATKRERLIIVAIRNDLPFNFTFPKPTHLSDEINTKLD 258


>gi|317132208|ref|YP_004091522.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470187|gb|ADU26791.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 346

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           + A D+G+PQ+R R++         E   P  +   P +
Sbjct: 161 LLASDYGLPQKRNRIFFCGIRKDLTE---PKGISEPPVV 196


>gi|126667824|ref|ZP_01738791.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
 gi|126627772|gb|EAZ98402.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
          Length = 327

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 16/106 (15%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPR---LGDILEEHIDDKSTIS 54
           +   D+G  + R+RL +I     L     F     + ++ +   L DIL+   +D     
Sbjct: 209 LNGNDYGCIENRDRLVVIAISKSLQALGGFDMSDIIPVRTKEATLNDILDPISED----- 263

Query: 55  NKLWEGHQKRKENNK----IAGKGFGYGLFFENSATTNTLSARYYK 96
           +  W+ H +  E  +     AGKGF   L+     + N L+  Y K
Sbjct: 264 DSAWKIH-EYLEKKEVSDIAAGKGFRRQLYTGAEESINVLTRGYAK 308


>gi|311234076|gb|ADP86930.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 489

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR R++++ 
Sbjct: 145 LDAQYFGVPQRRRRVFVVG 163


>gi|46579926|ref|YP_010734.1| type II DNA modification methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449342|gb|AAS95993.1| type II DNA modification methyltransferase, putative [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 487

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR R++++ 
Sbjct: 143 LDAQYFGVPQRRRRVFVVG 161


>gi|315150308|gb|EFT94324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0012]
          Length = 334

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFP----TPLGIKPRLGDILEEHIDDKS 51
           + +  + VPQ RER++II           FP        I P+ G I+   + +K 
Sbjct: 147 LNSKAY-VPQNRERVFIIGHSRAERTPQIFPLTREDKPVIHPKKGIIVVGKLPEKY 201


>gi|124486003|ref|YP_001030619.1| hypothetical protein Mlab_1183 [Methanocorpusculum labreanum Z]
 gi|124363544|gb|ABN07352.1| DNA-cytosine methyltransferase [Methanocorpusculum labreanum Z]
          Length = 352

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 1   MKACDFGVPQRRERLYIID---FLNPSVEFKF-PTPLGIKPRL 39
           + A D+GVPQ+R+RL II    F+    + ++ P   G KP +
Sbjct: 158 VNANDYGVPQKRKRLVIIASRFFIPKIPDGEYGPNNSGKKPYV 200


>gi|320094594|ref|ZP_08026360.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978509|gb|EFW10086.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 365

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP---RLGDILEEHIDDKSTISNKLWE 59
           A D+GV QRR R+ +  F +  V   F  P   +     +  ++E   D           
Sbjct: 193 ALDYGVAQRRYRVIVSGFRDREVSRAF-KPKKAETGNLTVRSVIEGLPDPVFFT-----H 246

Query: 60  GHQKRKENN 68
           G Q+    +
Sbjct: 247 GLQRTAIPH 255


>gi|306829493|ref|ZP_07462683.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428579|gb|EFM31669.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 450

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 3   ACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIKPRLGDI------LEEHIDD 49
           A ++GV Q RER +Y++  ++ +++++FP P      + D       L+  + D
Sbjct: 225 AKNYGVAQSRERCVYLLSRIDTNIQWEFPEPSTKIVTMRDAIGDLPSLDPDVTD 278


>gi|256819720|ref|YP_003140999.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581303|gb|ACU92438.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 389

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 29/92 (31%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
           +PQ RER+Y+I            +  G+ P   D             ++L++  + RKE 
Sbjct: 151 LPQNRERIYLIG------HLAGRSECGVFPITED-------------DRLFK-RETRKE- 189

Query: 68  NKIAGKGFGYGLFFENSATTNTLSARYYKDGS 99
                 G    +    ++   T+++RY+K GS
Sbjct: 190 -----NGEFPSI---KTSPARTITSRYHKMGS 213


>gi|325286536|ref|YP_004262326.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321990|gb|ADY29455.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A ++ VPQ+RER+  I   N   +      L  KP L         DK   + +  E 
Sbjct: 247 LNAANYYVPQKRERIIFIA--NRIGK----KNLHPKPLLT-------PDKYITTKQAIED 293

Query: 61  H 61
            
Sbjct: 294 L 294


>gi|172038386|ref|YP_001804887.1| site-specific DNA-methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699840|gb|ACB52821.1| probable site-specific DNA-methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 461

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGI 35
            + +FG PQ RER+ II   N     F  PT    
Sbjct: 243 NSANFGTPQIRERVVIICSRNGEKPPFLIPTHSEK 277


>gi|51892448|ref|YP_075139.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856137|dbj|BAD40295.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 486

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLG 34
           + A  +GVPQ RER+++I       VE +FP P  
Sbjct: 181 LNAVHYGVPQMRERMFLIAVAGELGVEPEFPVPTH 215


>gi|331090154|ref|ZP_08339042.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402100|gb|EGG81672.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 428

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILEE-------HIDDKS 51
            A  FGV Q R R+ I+ +L      K+P  L IK    + D+  +          DK 
Sbjct: 207 NAHTFGVLQNRRRMIIVGWLK-KSGLKYPDFLEIKTDAIVNDLFADLPKLHPGESSDKY 264


>gi|325690436|gb|EGD32439.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis SK115]
          Length = 390

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 2   KACDFGVPQRRERLYIID 19
            + D+GV Q RER+Y + 
Sbjct: 151 NSKDYGVAQNRERVYTLG 168


>gi|145301342|ref|YP_001144182.1| C-5 cytosine-specific DNA methylase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142856119|gb|ABO92434.1| C-5 cytosine-specific DNA methylase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 541

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR---LGDILEEHIDDKSTISNKL 57
           +   +FGV + R+RL ++   +    F       ++ +   + DILE        + ++ 
Sbjct: 281 LDGNEFGVIEARKRLCVVAVSHGIDGFDLEQVQPVRTKESCINDILEPIP-----LDSQR 335

Query: 58  WE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           W+      +++  +K AGKGF   L         T+   Y K
Sbjct: 336 WKSFDYLAEKELRDKAAGKGFARQLLAGAETFCGTVGKGYSK 377


>gi|42779474|ref|NP_976721.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
 gi|42735390|gb|AAS39329.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
          Length = 719

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR R+Y++ 
Sbjct: 176 IDAQYFGVPQRRRRIYLVA 194


>gi|254825325|ref|ZP_05230326.1| deoxycytosine methylase [Listeria monocytogenes FSL J1-194]
 gi|255521307|ref|ZP_05388544.1| modification methylase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|293594568|gb|EFG02329.1| deoxycytosine methylase [Listeria monocytogenes FSL J1-194]
          Length = 385

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 26/103 (25%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL-----GIKPRLGDIL-----EEHID-- 48
           + A DFG+PQ R R +++   N  +E   P  +      I+  L D L     EE +D  
Sbjct: 212 LNALDFGIPQSRSRTFMLSIRNSEIE---PEEISNLDYSIESNLADFLRFEYVEEGVDAM 268

Query: 49  DKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLS 91
              T S    E    R       G           +  TNT+S
Sbjct: 269 PNYTPS---REKIYNRNRLLAKNG--------VVKADFTNTIS 300


>gi|207092664|ref|ZP_03240451.1| type II DNA modification enzyme [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|207108938|ref|ZP_03243100.1| type II DNA modification enzyme [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 160

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 1   MKACDFGVPQRRERLY 16
           + A D+GVPQ RER++
Sbjct: 145 LNALDYGVPQIRERVF 160


>gi|118431236|ref|NP_147563.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
 gi|116062559|dbj|BAA79854.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
          Length = 469

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 5   DF---GVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH--IDDKSTISN 55
           DF   GVPQ+RERL II          F T   ++ R+  +L     +  +  ++ 
Sbjct: 191 DFSKLGVPQKRERLVIIGLRKDLAGGGFETISRLRARIDHVLSGKRWLLHRYPLTP 246


>gi|172037464|ref|YP_001803965.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171698918|gb|ACB51899.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 430

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A +FG+PQ+RERL++I     
Sbjct: 203 LYAPNFGIPQKRERLFLIGLKKE 225


>gi|220926735|ref|YP_002502037.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS 2060]
 gi|219951342|gb|ACL61734.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS 2060]
          Length = 454

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDIL 43
           + A   GVPQ R+RL  +   +       FP PL  +  + D L
Sbjct: 251 LDAQWLGVPQARQRLIFVGVRDDLGLSPAFPKPLPFRYSVRDAL 294


>gi|2760954|gb|AAB95336.1| EaeI methyltransferase alpha subunit [Enterobacter aerogenes]
          Length = 309

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FG PQRR R+YI+ 
Sbjct: 152 LDAKYFGTPQRRRRVYIVA 170


>gi|284989342|ref|YP_003407896.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
 gi|284062587|gb|ADB73525.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
          Length = 671

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL----GDILE 44
           +    +G+PQ R+RL I+   N  V F++P        +    GD+ E
Sbjct: 206 LDCRAYGIPQFRQRLIIVALRNGHV-FEWPAVAEQTVNVWNAIGDLPE 252


>gi|262118158|ref|YP_003275928.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
 gi|262088068|gb|ACY24035.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
          Length = 652

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 11/52 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG------DILEEH 46
           + +  FGVPQ R+RLYI+ F +     K P P      L       DI+E  
Sbjct: 202 LNSMFFGVPQSRDRLYIV-FWDR----KLPAPDLDHRPLAHCAHCDDIVESK 248


>gi|317132209|ref|YP_004091523.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470188|gb|ADU26792.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 438

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 2   KACDFGVPQRRERLYIIDFLNPS 24
              DFG PQ R+R +I+      
Sbjct: 203 NTKDFGFPQNRKRAFILGIKKEH 225


>gi|315585937|gb|ADU40318.1| site-specific DNA-methyltransferase [Helicobacter pylori 35A]
          Length = 295

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   RRERL I+   N     F FP P  +   +   L+
Sbjct: 91  LNSAWYGSATRRERLIIVAIRNDLPFNFTFPKPTHLSDEINTKLD 135


>gi|261838825|gb|ACX98591.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 413

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 214 LNSAWYGSATKRERLIIVAIRNDLPFHFAFPKPTHLSDEINTKLD 258


>gi|227357019|ref|ZP_03841390.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|261345118|ref|ZP_05972762.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|227162822|gb|EEI47782.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|282566805|gb|EFB72340.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 301

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FG PQRR R+YII 
Sbjct: 152 LDAKYFGTPQRRRRVYIIG 170


>gi|308183509|ref|YP_003927636.1| DNA-cytosine methyltransferase [Helicobacter pylori PeCan4]
 gi|308065694|gb|ADO07586.1| DNA-cytosine methyltransferase [Helicobacter pylori PeCan4]
          Length = 238

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPTPLGIK-PRLGDILEEHIDDKSTISNK- 56
           +K  DFGV Q RER+ ++          F F        P + +IL++  +    ++   
Sbjct: 83  LKVSDFGVSQLRERVIMVGVNESYFKEPFNFKILKKSHAPFVYEILKDLEN----LTEGA 138

Query: 57  LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYY 95
           +      + + NK  G                T+ A ++
Sbjct: 139 MPNHFYSKAKRNKGQGNN-----AINKDTYAPTMRAEHH 172


>gi|26553946|ref|NP_757880.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
 gi|26453954|dbj|BAC44284.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
          Length = 395

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKF---PTPLGIKPRLGDILEEHIDDKS 51
           + + +F   Q RER++ +   +       FKF           ++ DIL +  + K 
Sbjct: 217 LNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVKNPPKKIKDILVDSSNYKY 273


>gi|168698288|ref|ZP_02730565.1| cytosine-specific methyltransferase [Gemmata obscuriglobus UQM
          2246]
          Length = 293

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHI 47
          ++A  FGVPQ R RL+I+         + P  +  +P  G+ L + +
Sbjct: 51 LEASAFGVPQVRRRLFIVG-----NRLQLP-IITPQPIFGEGLAKPV 91


>gi|328543334|ref|YP_004303443.1| DNA methylase, C-5 cytosine-specific family [polymorphum gilvum
           SL003B-26A1]
 gi|326415695|gb|ADZ72758.1| DNA methylase, C-5 cytosine-specific family [Polymorphum gilvum
           SL003B-26A1]
          Length = 418

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           + A +FG PQ R R++I+     +     P P    P L 
Sbjct: 172 LSAEEFGTPQLRRRVFIVASRIGAASELLPNPTHWSPALA 211


>gi|207094141|ref|ZP_03241928.1| hypothetical protein HpylHP_15485 [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 35

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 4  CDFGVPQRRERLYIIDFLNPSVEFKF 29
            F VPQ RER +I+     S +F  
Sbjct: 9  KTFCVPQNRERAFIVGASRFSFDFNL 34


>gi|301020988|ref|ZP_07185039.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|3660493|emb|CAA57706.1| M.EcoHK31I alpha polypeptide [Escherichia coli]
 gi|300398362|gb|EFJ81900.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 309

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FG PQRR R+YI+ 
Sbjct: 152 LDAKYFGTPQRRRRVYIVA 170


>gi|328914001|gb|AEB65597.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 600

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF--KFPTPLGIKPR---------LGDI-----LE 44
           + A DFGVPQ R R  I+   N   E   K P  L              L DI     +E
Sbjct: 369 LTATDFGVPQIRRRFIILGVRNDLFENSPKLPDALVHSTPFTVRDAIQDLADITPLTDME 428

Query: 45  EHIDDKSTISNKLWEGHQKRKENNKIAG 72
           +        S+       +    +   G
Sbjct: 429 KAKPLDYIESDAQASPMLRYFRKDADKG 456


>gi|308175642|ref|YP_003922347.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307608506|emb|CBI44877.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|328555623|gb|AEB26115.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens
           TA208]
          Length = 597

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF--KFPTPLGIKPR---------LGDI-----LE 44
           + A DFGVPQ R R  I+   N   E   K P  L              L DI     +E
Sbjct: 366 LTATDFGVPQIRRRFIILGVRNDLFENSPKLPDALVHSTPFTVRDAIQDLADITPLTDME 425

Query: 45  EHIDDKSTISNKLWEGHQKRKENNKIAG 72
           +        S+       +    +   G
Sbjct: 426 KAKPLDYIESDAQASPMLRYFRKDADKG 453


>gi|332674342|gb|AEE71159.1| site-specific DNA-methyltransferase [Helicobacter pylori 83]
          Length = 418

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 214 LNSAWYGSATKRERLIIVAIRNDLPFHFAFPKPTHLSDEINTKLD 258


>gi|317504402|ref|ZP_07962385.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
 gi|315664482|gb|EFV04166.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
          Length = 579

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV 25
           + A ++G+PQRR R+YII +   S 
Sbjct: 167 INAAEYGMPQRRRRIYIIGYYKGST 191


>gi|327534643|gb|AEA93477.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis OG1RF]
          Length = 334

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER++II 
Sbjct: 147 LNSKAY-VPQNRERVFIIG 164


>gi|114570713|ref|YP_757393.1| DNA (cytosine-5-)-methyltransferase [Maricaulis maris MCS10]
 gi|114341175|gb|ABI66455.1| DNA (cytosine-5-)-methyltransferase [Maricaulis maris MCS10]
          Length = 375

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A DFG    RER+ I+ F    ++
Sbjct: 148 LNAADFGAATSRERVLIVGFNPSEMD 173


>gi|108805045|ref|YP_644982.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766288|gb|ABG05170.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
          Length = 405

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT---PLGIKPRLGDILEEHIDDKSTISN 55
           ++A ++GVPQRR R+ ++   +  VE + P     LG    L + L   +  +  +S+
Sbjct: 304 LRAEEYGVPQRRTRVILVGDSSGDVESEPPKTVTQLGNNMSLFNELPAAVSVRDALSD 361


>gi|150024948|ref|YP_001295774.1| type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771489|emb|CAL42958.1| Probable type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + +  +GVPQ RER+  I F  
Sbjct: 209 LHSGQYGVPQSRERIIFIGFKK 230


>gi|171911440|ref|ZP_02926910.1| DNA-cytosine methyltransferase [Verrucomicrobium spinosum DSM 4136]
          Length = 292

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR RL+++ 
Sbjct: 159 LDAAGFGVPQRRRRLFMVG 177


>gi|313678719|ref|YP_004056459.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950602|gb|ADR25197.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 324

 Score = 37.2 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + + +FGVPQ+RER+  I 
Sbjct: 153 LDSSNFGVPQKRERVIFIG 171


>gi|112983066|ref|NP_001036934.1| DNA cytosine-5 methyltransferase [Bombyx mori]
 gi|54888741|dbj|BAD67190.1| DNA cytosine-5 methyltransferase [Bombyx mori]
          Length = 336

 Score = 37.2 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 7   GVPQRRERLYIIDFLNPSVEFK--------FPTPLGIKPRLGDILEEHIDDKSTISNKLW 58
           GVP  R R Y I   N +  FK         P        L DI+E ++ D   + +K+ 
Sbjct: 157 GVPNSRLRYYCIAKRNNTWNFKRKDELITCLPKTFAKPHCLKDIIENNVPDDYLVPDKML 216


>gi|169825443|ref|YP_001695618.1| modification methylase PspPI [Lysinibacillus sphaericus C3-41]
 gi|168994720|gb|ACA42259.1| Modification methylase PspPI [Lysinibacillus sphaericus C3-41]
          Length = 475

 Score = 37.2 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+  PQRRER +II   +   + + PTP+        + E        +S+ L
Sbjct: 286 LDAVDYNSPQRRERTFIIG--SKIGKIELPTPITTPDNYKTVQEAFAG----LSDNL 336


>gi|206579328|ref|YP_002239202.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206568386|gb|ACI10162.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 347

 Score = 37.2 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           +   D+G+PQ R RL +I      + F        K  + D
Sbjct: 149 VNCSDYGLPQNRRRLILIGSRLGPISFD-QEKKDRKTTVKD 188


>gi|34451616|gb|AAQ72364.1| methylase fusion protein [Geobacillus stearothermophilus]
          Length = 1007

 Score = 37.2 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP---SVEFKFPTPLGIKPR 38
           + + D+ VPQ+R+R++II   +         FPTP+  +P 
Sbjct: 921 LMSSDYAVPQKRKRVFIICTRDDMDVKPADLFPTPITEEPE 961


>gi|228950284|ref|ZP_04112461.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809446|gb|EEM55890.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 346

 Score = 36.8 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP 30
           + A   G+PQRRER++   F+    E   P
Sbjct: 181 LNAATMGIPQRRERIF---FIARQKELSLP 207


>gi|187934831|ref|YP_001884812.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187722984|gb|ACD24205.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 424

 Score = 36.8 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 38  RLGDILEEHIDDKSTISN---KLWEGHQKRKENNKIAGKGFGY-----GLFFEN--SATT 87
            L DILEEH+D+K  +S    + W   +  K   + +  G  Y     G+ F +      
Sbjct: 270 TLRDILEEHVDEKYILSEGDLEKWTYLKGPKAIERTSKDGHKYTFREGGIAFPDPIDKPA 329

Query: 88  NTL 90
            T+
Sbjct: 330 RTM 332


>gi|182677759|ref|YP_001831905.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633642|gb|ACB94416.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 488

 Score = 36.8 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A  +GVPQ R R+ ++       +
Sbjct: 209 LNAAHYGVPQERFRVVVVGTRKDVAD 234


>gi|109946897|ref|YP_664125.1| site-specific DNA-methyltransferase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714118|emb|CAJ99126.1| site-specific DNA-methyltransferase [Helicobacter acinonychis str.
           Sheeba]
          Length = 418

 Score = 36.8 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 214 LNSAWYGSATKRERLIIVAIRNDLPFNFAFPKPTHLNDEINTKLD 258


>gi|317489194|ref|ZP_07947712.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325832321|ref|ZP_08165320.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
 gi|316911702|gb|EFV33293.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486157|gb|EGC88611.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
          Length = 447

 Score = 36.8 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 1   MKACDFGVPQRRERLYIIDFL 21
           + A  FG+ QRRER++++  L
Sbjct: 142 LDAQFFGLAQRRERVFLVGVL 162


>gi|222149028|ref|YP_002549985.1| DNA methylase [Agrobacterium vitis S4]
 gi|221736013|gb|ACM36976.1| DNA methylase [Agrobacterium vitis S4]
          Length = 492

 Score = 36.8 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLG 34
           + +  +GVPQ RERL++I +  +  V   FP P  
Sbjct: 188 LNSAFYGVPQMRERLFLIAYDRSLGVTPTFPHPSH 222


>gi|318057150|ref|ZP_07975873.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           SA3_actG]
 gi|318076182|ref|ZP_07983514.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           SA3_actF]
          Length = 324

 Score = 36.8 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 1   MKACDFGVPQRRERLYIIDFL-----NPSVEFKFPTPLGIK-PRLGDILEEHIDDK 50
           + A DFGV QRRE      FL          F +P PL    P LG+ L   +  +
Sbjct: 149 LDARDFGVSQRREH----GFLLAMSGERMKRFSWPVPLATPCPTLGETLRASMGAR 200


>gi|299065518|emb|CBJ36687.1| Cytosine-specific methyltransferase [Ralstonia solanacearum CMR15]
          Length = 441

 Score = 36.8 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG-------IKPRLGDILEEH 46
           + A ++G PQ RER   I     +V   FP P          +P  G ++E  
Sbjct: 176 VNAVNYGAPQLRERALFIG-NRYNVVVDFPDPTHGPAHSISAQPEQGSLIEPD 227


>gi|196048102|ref|ZP_03115280.1| type II DNA-methyltransferase, putative [Bacillus cereus 03BB108]
 gi|196021358|gb|EDX60087.1| type II DNA-methyltransferase, putative [Bacillus cereus 03BB108]
          Length = 464

 Score = 36.8 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           + A DFG   +R R Y + F +      F  P   +      L E++D K+ I    W+ 
Sbjct: 263 IDAVDFGSIAKRNRTYAVAFRSEEAFLNFEFPSPPRTVKRSKLREYLDGKNVI--HQWKD 320

Query: 61  HQ 62
            +
Sbjct: 321 LR 322


>gi|209525992|ref|ZP_03274525.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493518|gb|EDZ93840.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 430

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK--PRLGDILEEHIDDKST-----I 53
           + A ++G PQ+R+RL +I         ++P     +       I +    D  T     I
Sbjct: 170 LDASEYGAPQKRKRLILIGSRFDVKIAEYPATNKSEMFTVYQAISDLEKIDNFTNYDPGI 229

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENS---ATTNTL 90
           S    E    RK+          Y L   +S       T+
Sbjct: 230 SPAFLEYEGDRKK----------YSLVPSDSFSLCHKRTI 259


>gi|205360554|ref|ZP_02684441.2| modification methylase DdeI [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348823|gb|EDZ35454.1| modification methylase DdeI [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 394

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           +++ DFGVPQ R+RL+II          FP P        D L++        +  LW+
Sbjct: 156 LESTDFGVPQIRKRLFIIASRKELKN-PFPKPTHNITG-SDGLKK--------TPTLWD 204


>gi|315656923|ref|ZP_07909810.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492878|gb|EFU82482.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 503

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR R++++ 
Sbjct: 176 LDAQFFGVPQRRRRIFLVA 194


>gi|304389869|ref|ZP_07371828.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327045|gb|EFL94284.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 503

 Score = 36.8 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR R++++ 
Sbjct: 176 LDAQFFGVPQRRRRIFLVA 194


>gi|86749313|ref|YP_485809.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86572341|gb|ABD06898.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 358

 Score = 36.8 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           FGVPQ R RL ++   +   + + P P+G  P 
Sbjct: 163 FGVPQNRRRLVLLA--SKFGDIRLPEPIGTPPT 193


>gi|20068989|gb|AAM09642.1|AF458983_2 m6 adenine and m5 cytosine DNA methyltransferase [Hafnia alvei]
          Length = 1061

 Score = 36.8 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
            + +  +GVPQ R R++++   + +++   P P+  +
Sbjct: 974  LCSEQYGVPQMRRRIFVVATTDDTIDLSEPAPIYER 1009


>gi|237704019|ref|ZP_04534500.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|20068985|gb|AAM09639.1|AF458982_2 m5 cytosine DNA methyltransferase [Escherichia coli]
 gi|226901931|gb|EEH88190.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|281181427|dbj|BAI57757.1| methyltransferase [Escherichia coli SE15]
 gi|315286888|gb|EFU46305.1| C-5 cytosine-specific DNA methylase [Escherichia coli MS 110-3]
 gi|323955407|gb|EGB51176.1| C-5 cytosine-specific DNA methylase [Escherichia coli H263]
          Length = 396

 Score = 36.8 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISN 55
           + +  + +PQRR+R+ ++   +P    + P       +L +  E  +  K  +S+
Sbjct: 303 LNSEHYAIPQRRKRVILVGSNDPLFSIEPPQ------KLTEDKESWVSVKDALSD 351


>gi|238790792|ref|ZP_04634550.1| site-specific DNA methylase [Yersinia frederiksenii ATCC 33641]
 gi|238721107|gb|EEQ12789.1| site-specific DNA methylase [Yersinia frederiksenii ATCC 33641]
          Length = 712

 Score = 36.8 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           +KACD+G P  R+RL+++          +P P    P   D+L
Sbjct: 242 LKACDYGTPTIRKRLFVVG-RCDGESVVWPEPSHGAPNSADVL 283


>gi|298491379|ref|YP_003721556.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
 gi|298233297|gb|ADI64433.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
          Length = 379

 Score = 36.8 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 7/37 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-------SVEFKFP 30
           + + ++GVPQ R+R+  I F +          +F FP
Sbjct: 172 INSIEYGVPQDRDRIISIGFNSHFLEEMGIEDDFTFP 208


>gi|2129405|pir||S53867 DNA (cytosine)-methyltransferase (EC 2.1.1.-) Dcm5a - Halobacterium
           salinarum
 gi|732794|emb|CAA56444.1| cytosine methylase [Halobacterium phage phiH]
          Length = 245

 Score = 36.8 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A D+G PQ RERL+I
Sbjct: 178 LNAADYGDPQSRERLFI 194


>gi|325860528|ref|ZP_08173633.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
 gi|325481968|gb|EGC84996.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
          Length = 403

 Score = 36.8 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKF 29
           A D+GVPQ R R+ II        F F
Sbjct: 175 AKDYGVPQSRYRVLIIGTERNLPTFDF 201


>gi|288929280|ref|ZP_06423125.1| modification methylase HphIA (Cytosine-specific methyltransferase
           HphIA) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329382|gb|EFC67968.1| modification methylase HphIA (Cytosine-specific methyltransferase
           HphIA) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 370

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
           +KA +FGVP++RERL++I  LN S+E +    L     L +
Sbjct: 159 VKAIEFGVPEKRERLFVIGTLNKSIELEKLEQLTRTQILAE 199


>gi|295103751|emb|CBL01295.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 412

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFK 28
           + A D+G  QRR R ++  F N +  F+
Sbjct: 157 INAADYGEAQRRRRTFLFAFRNDTALFR 184


>gi|86750436|ref|YP_486932.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86573464|gb|ABD08021.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 438

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + A DFGVPQ R+RL  +   + S
Sbjct: 152 VDAADFGVPQTRKRLLFVGVRSRS 175


>gi|79835453|gb|ABB52085.1| Mod [Arthrospira platensis]
 gi|291569776|dbj|BAI92048.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 429

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+G+PQ R+RL+I+      +   FP P          L  H   K      LWE
Sbjct: 192 LNATDYGIPQVRKRLFILA-HRCDLTHPFPQPTHT-TSNQTELFTHNLKK---CPSLWE 245


>gi|15678523|ref|NP_275638.1| modification methyltransferase, cytosine-specific
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621566|gb|AAB85001.1| modification methyltransferase, cytosine-specific
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 413

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
            A +FGVPQRR R+ +I         +F         + DIL
Sbjct: 196 DAYNFGVPQRRRRIIVIGHRMEDKRIQFDEERYAGT-VNDIL 236


>gi|79835456|gb|ABB52087.1| Mod [Arthrospira platensis]
          Length = 443

 Score = 36.8 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A DFGVPQ R+R++I+ 
Sbjct: 155 LDAVDFGVPQFRKRVFILG 173


>gi|60202519|gb|AAX14651.1| BbvCI methyltransferase 2 [Brevibacillus brevis]
          Length = 396

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           ++A D+GVPQ R RL+++   +P     FP     
Sbjct: 154 LQAADYGVPQLRSRLFVVGSRHPIAN-PFPNKTHS 187


>gi|218439218|ref|YP_002377547.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218171946|gb|ACK70679.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 323

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
              D+G PQ RER+ II      + +++  P      
Sbjct: 147 NFADYGTPQLRERVLIIGIRQD-ISYQYIKPKPTHTP 182


>gi|292657161|ref|YP_003537057.1| site-specific DNA-methyltransferase (cytosine-specific) [Haloferax
           volcanii DS2]
 gi|291373000|gb|ADE05226.1| site-specific DNA-methyltransferase (cytosine-specific) [Haloferax
           volcanii DS2]
          Length = 406

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 1   MKACDFGVPQRRER---LYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+GVPQRR R   + I    +  VEF  P     +P  G + E  +  K  +  + 
Sbjct: 184 VNAADYGVPQRRMRTIGICIYGASDSEVEFP-PETHAREPEDG-LKERWVTVKDVLKEEY 241


>gi|325270632|ref|ZP_08137230.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
 gi|324987027|gb|EGC19012.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
          Length = 283

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 3  ACDFGVPQRRERLYIIDFLNPSVEFKF 29
          A D+GVPQ R R+ II        F F
Sbjct: 55 AKDYGVPQSRYRVLIIGTERNLPTFDF 81


>gi|291007577|ref|ZP_06565550.1| DNA-cytosine methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 418

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-------SVEFKFPTPLGIKPRLGDI 42
           + A D+GVPQ R R  I+             V  ++P P  ++  +  +
Sbjct: 173 LNAADYGVPQARRRAIILATRRDLISEHPERVGVQYPEPTHVRNAVHTL 221


>gi|284051998|ref|ZP_06382208.1| cytosine-specific methyltransferase [Arthrospira platensis str.
           Paraca]
 gi|79835461|gb|ABB52090.1| Mod [Arthrospira platensis]
 gi|291568828|dbj|BAI91100.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 411

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK--PRLGDILEEHIDDKST-----I 53
           + A ++G PQ+R+RL +I         ++P     +       I +    D  T     I
Sbjct: 158 LDASEYGAPQKRKRLILIGSRFDVKMAEYPATNNSEIVTVYQAISDLEKIDHFTNYDPGI 217

Query: 54  SNKLWEGHQKRKENNKIAGKGFGYGLFFENS 84
           S    E    RK+          Y L   +S
Sbjct: 218 SPAFLEYEGDRKK----------YSLVPSDS 238


>gi|145593130|ref|YP_001157427.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
 gi|145302467|gb|ABP53049.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
          Length = 652

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL----GDILE 44
           +GVPQ R+RL ++  L   V F +P  +  +  +    GD+ E
Sbjct: 214 YGVPQFRQRLILVA-LRDGVAFDWPPEVPDRVSVWNAIGDLPE 255


>gi|16125285|ref|NP_419849.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|221234022|ref|YP_002516458.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
 gi|13422327|gb|AAK23017.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|220963194|gb|ACL94550.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
          Length = 335

 Score = 36.8 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A D G PQ R RL+++ 
Sbjct: 155 LNAKDHGTPQNRPRLFLLG 173


>gi|331085773|ref|ZP_08334856.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406696|gb|EGG86201.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 356

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + A D+GVPQ R+RL  +         KFP 
Sbjct: 149 LCAADYGVPQIRKRLIFMGIRKDIGAPKFPE 179


>gi|307637157|gb|ADN79607.1| DNA cytosine methyltransferase [Helicobacter pylori 908]
          Length = 165

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A D+GVPQ RER+ +
Sbjct: 145 LNALDYGVPQVRERVIL 161


>gi|316934943|ref|YP_004109925.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315602657|gb|ADU45192.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 495

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPT 31
           + +   GVPQ R+R++++ F      + +FP 
Sbjct: 192 LNSAHHGVPQMRDRVFLLAFHKSIEADIRFPK 223


>gi|194335797|ref|YP_002017591.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308274|gb|ACF42974.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 434

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 1   MKACDFGVPQRRERLYIID--FLNPSVEF 27
           + A D+GVPQ R R +I+   F +P   F
Sbjct: 178 LCAADYGVPQIRWRAFIVGCKFADPQAVF 206


>gi|284053383|ref|ZP_06383593.1| hypothetical protein AplaP_18124 [Arthrospira platensis str.
           Paraca]
 gi|291571237|dbj|BAI93509.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 451

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A DFGVPQ R+R++I+ 
Sbjct: 155 LDAVDFGVPQFRKRVFILG 173


>gi|254467075|ref|ZP_05080486.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206687983|gb|EDZ48465.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 497

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPR 38
           ++A D+GVPQ R R+ I+      +   K   P+  +P+
Sbjct: 228 IRAEDYGVPQARHRVIILGIRKDLATGLKLDGPILGQPK 266


>gi|154482791|ref|ZP_02025239.1| hypothetical protein EUBVEN_00468 [Eubacterium ventriosum ATCC
           27560]
 gi|149736386|gb|EDM52272.1| hypothetical protein EUBVEN_00468 [Eubacterium ventriosum ATCC
           27560]
          Length = 193

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 1   MKACDFGVPQRRERLYIID-F---LNPSVEFKFPTPLGIKPRLGD 41
           + A  +GVPQRR+R+Y+I  F       + FK  + LG  P+  +
Sbjct: 123 LDAQYWGVPQRRKRIYLIGDFGGQRAGEILFKSESVLGYTPKSKE 167


>gi|26990694|ref|NP_746119.1| DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
 gi|24985686|gb|AAN69583.1|AE016592_2 DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
          Length = 348

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP--SVEFKFPT 31
           + +  FGV Q R R +I        +  F FP 
Sbjct: 179 INSSGFGVAQHRRRYFIAGISKEIKNKAFTFPD 211


>gi|326772743|ref|ZP_08232027.1| modification methylase XorII [Actinomyces viscosus C505]
 gi|326637375|gb|EGE38277.1| modification methylase XorII [Actinomyces viscosus C505]
          Length = 364

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A D+G PQ R R  +I          FP P       GD+
Sbjct: 152 LNAADYGAPQARRRAVLIGHRYDMAVPGFPEPTHSPDGGGDL 193


>gi|156033307|ref|XP_001585490.1| hypothetical protein SS1G_13729 [Sclerotinia sclerotiorum 1980]
 gi|154699132|gb|EDN98870.1| hypothetical protein SS1G_13729 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 437

 Score = 36.4 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 6   FGVPQRRE--R---LYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
           F +PQ+ E  R   ++I         F  P PL I P+L    E       TIS + W  
Sbjct: 165 FFIPQKSEGERMIQIFIAGIERGKPFFTMP-PLDIIPKLA--FEPK-----TISERAWLL 216

Query: 61  HQK 63
              
Sbjct: 217 LYN 219


>gi|325069024|ref|ZP_08127697.1| modification methylase XorII [Actinomyces oris K20]
          Length = 201

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A D+G PQ R R  +I          FP P       GD+
Sbjct: 152 LNAADYGAPQARRRAVLIGHRYDMAVPGFPEPTHSPDGGGDL 193


>gi|329767774|ref|ZP_08259290.1| hypothetical protein HMPREF0428_00987 [Gemella haemolysans M341]
 gi|328838875|gb|EGF88469.1| hypothetical protein HMPREF0428_00987 [Gemella haemolysans M341]
          Length = 336

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 16/102 (15%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL----GIKPRLGDILEEHIDDKS-TISN 55
           + A   GVPQ+RER++   F+    +   P           +  ++ E+   ++   ++ 
Sbjct: 174 LNASTMGVPQKRERVF---FICRRKDLNLPELQLNFNEKPIKFKEVREKGKGEEVKGVAG 230

Query: 56  KLWEGHQK-----RKENNKIAGKG--FGYGLFFENSATTNTL 90
           +L    +K      K   ++ GKG  F   LF + +   NT+
Sbjct: 231 ELLAYAKKGETNLEKACIRLRGKGSFFNTVLFSDEN-VPNTI 271


>gi|315654951|ref|ZP_07907856.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315490912|gb|EFU80532.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 508

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR+R+Y+I 
Sbjct: 177 LDAQFFGVPQRRKRIYLIC 195


>gi|298346372|ref|YP_003719059.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298236433|gb|ADI67565.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 508

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQRR+R+Y+I 
Sbjct: 177 LDAQFFGVPQRRKRIYLIC 195


>gi|325695618|gb|EGD37518.1| modification methylase SinI [Streptococcus sanguinis SK150]
          Length = 471

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 2   KACDFGVPQRRERLYIID 19
            A +FG PQ+RER  II 
Sbjct: 236 NAANFGAPQKRERFVIIA 253


>gi|328947595|ref|YP_004364932.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447919|gb|AEB13635.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 476

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 12/57 (21%)

Query: 2   KACDFGVPQRRERLYIIDFL------------NPSVEFKFPTPLGIKPRLGDILEEH 46
            A ++G PQ+RER+                  +    F  P    ++  L D+ E+ 
Sbjct: 246 NAANYGAPQKRERVVFFCSRDGEKVPYLPPTNDEFGNFGLPKWRTVREVLSDLKEDE 302


>gi|317179735|dbj|BAJ57523.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 418

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
           + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 214 LNSAWYGSATKRERLIIVAIKNDLPFNFTFPKPTHLSDEINTKLD 258


>gi|119485563|ref|ZP_01619838.1| modification methylase [Lyngbya sp. PCC 8106]
 gi|119456888|gb|EAW38015.1| modification methylase [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 7   GVPQRRERLYIIDFLNPSVEFK---FPTPLGIKPRLGDILEEHIDDKSTISNKL-WEGHQ 62
           GVPQ+R+R + +  LN         F + L  KP         + D   + +KL  E + 
Sbjct: 148 GVPQKRKRFFWVGELNGKDNRLLSYFESKLSSKPT-------TVRD--YLGDKLGLEYYY 198

Query: 63  KRKENNKIAGKGFGYGLFFENSATTN 88
           +   + +  G    + +  E S T  
Sbjct: 199 RHPRSYQRRGI---FSI-DEPSPTVR 220


>gi|325298704|ref|YP_004258621.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
 gi|324318257|gb|ADY36148.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM 18170]
          Length = 399

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 13/57 (22%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
           A D+GVPQ+R R+ ++          F F           ++LE  + + +  S   
Sbjct: 172 ASDYGVPQKRYRVLMVGIDRELNLGHFDF-----------NLLETIVRENNIPSEHY 217


>gi|284050355|ref|ZP_06380565.1| site-specific DNA-methyltransferase [Arthrospira platensis str.
           Paraca]
          Length = 371

 Score = 36.4 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + A D+G+PQ R+RL+I+      +   FP P        ++   ++         LWE
Sbjct: 151 LNATDYGIPQVRKRLFILA-HRCDLTHPFPQPTHTTSNQTELFTHNLKKC----PSLWE 204


>gi|317011768|gb|ADU85515.1| site-specific DNA-methyltransferase [Helicobacter pylori
          SouthAfrica7]
          Length = 236

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILE 44
          + +  +G   +RERL I+   N     F FP P  +   +   L+
Sbjct: 32 LNSAWYGSATKRERLIIVAIRNDLPFNFIFPKPTHLSDEINTKLD 76


>gi|115481456|ref|NP_001064321.1| Os10g0209300 [Oryza sativa Japonica Group]
 gi|19881629|gb|AAM01030.1|AC091735_3 Putative Riboflavin biosynthesis protein ribF [Oryza sativa
           Japonica Group]
 gi|110288837|gb|ABG65995.1| Riboflavin kinase/FAD synthetase family protein [Oryza sativa
           Japonica Group]
 gi|113638930|dbj|BAF26235.1| Os10g0209300 [Oryza sativa Japonica Group]
          Length = 329

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 14  RLYIIDFLNPSVEF-KFPTPLGIKPRLGDILEEHID----DKSTISNKLWEGHQKRKENN 68
           RL I+ ++ P   F    + +        I E+ ++     K T S  L       KE+N
Sbjct: 261 RLVIVGYIRPEANFPSLESLIERIHEDARIAEKALNLPLYAKYTDSPYLRNSL---KEDN 317

Query: 69  KIAGK 73
              G 
Sbjct: 318 SANGN 322


>gi|260591129|ref|ZP_05856587.1| modification methylase AluI [Prevotella veroralis F0319]
 gi|260536994|gb|EEX19611.1| modification methylase AluI [Prevotella veroralis F0319]
          Length = 452

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 5   DFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR 38
            FG+P  R R+YI+  L        FKFP        
Sbjct: 156 YFGIPHHRNRMYIVGRLKSKGGLQGFKFPDHEERPKC 192


>gi|311977244|gb|ADQ20500.1| M1.BfuAI [Lysinibacillus fusiformis]
          Length = 357

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           A D+GVPQ+R R+ +I       +  FP P   +
Sbjct: 162 AADYGVPQKRYRMLMIG-NRLGQDIIFPEPTHSE 194


>gi|283796860|ref|ZP_06346013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075266|gb|EFE12630.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 547

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  +GVPQRR+R+Y++ 
Sbjct: 184 LDAQYWGVPQRRKRIYLVA 202


>gi|312902260|ref|ZP_07761468.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
 gi|310634319|gb|EFQ17602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0635]
          Length = 359

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILE 44
           + +  +GVPQRR R++++  F     +F+    L     +   LE
Sbjct: 174 LDSQYWGVPQRRRRIFLVADFR----DFRAREILFDTQGMQSHLE 214


>gi|119897062|ref|YP_932275.1| C-5 cytosine-specific DNA methylase [Azoarcus sp. BH72]
 gi|119669475|emb|CAL93388.1| probable C-5 cytosine-specific DNA methylase [Azoarcus sp. BH72]
          Length = 434

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           + + ++G PQ RER+  I     ++E  FP P  
Sbjct: 173 VNSVNYGAPQIRERVIFIG-NRFNMEVDFPNPTH 205


>gi|150396423|ref|YP_001326890.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027938|gb|ABR60055.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
          Length = 632

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           A D+G+ Q R R+  I          F  P     R  +I +  +D    ++   WEG  
Sbjct: 425 AKDYGLAQERSRVLFIGIRKDLAR-GFRMPPKFPQRSANIGDVLVD---LMAANGWEGAY 480

Query: 63  KRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
           +     + A            +   +T+  R  K
Sbjct: 481 EWARERREA------------NDVASTVVTRRGK 502


>gi|89243223|gb|ABD64771.1| Met1 [Volvox carteri f. nagariensis]
          Length = 2262

 Score = 36.4 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + A  FGVPQ R+R +I   L   V  ++PTP  +
Sbjct: 1920 LNAGHFGVPQSRKRTFIWAALPGEVLPEWPTPRHV 1954


>gi|317127844|ref|YP_004094126.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
 gi|315472792|gb|ADU29395.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
          Length = 360

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 19/89 (21%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------RLGDILEEHID-----D 49
           + A +FGVPQ+R R + I       +  F   L  KP       LG++ E          
Sbjct: 153 LDASEFGVPQKRLRAFFIATRKDIPQITFDK-LKKKPIVLVKDALGELYELEEQMGKNRS 211

Query: 50  KSTISNK----LWEGHQKRK---ENNKIA 71
              +S+K      +  +  K   EN++I 
Sbjct: 212 NYFLSSKPDSSYRKYLRNSKNSIENHEIR 240


>gi|242022906|ref|XP_002431878.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
            corporis]
 gi|212517219|gb|EEB19140.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
            corporis]
          Length = 1330

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
            ++A ++G+PQ R RL+I+          FP P  +       L+  +DDK   +N  W  
Sbjct: 1032 LQAGNYGIPQTRRRLFILAAAPNLKLPLFPEPTHVFSLRASNLQVTVDDKRFTTNCKWST 1091


>gi|169834680|ref|YP_001693292.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169123228|gb|ACA47063.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 284

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 8   VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHID---DKSTISNKLWEGHQKR 64
           +PQ+R+RL +I    P    K+P    IK  L ++LE+  +          K   G  + 
Sbjct: 144 LPQKRKRLILIGTKRPFDNLKYPESNPIK--LKNLLEDDPEIDIPNYVY--KRLNGAYRD 199

Query: 65  KENNKIAGKGFGYGLFFENSATTNTLSARYYKD 97
           K             +         T  A Y KD
Sbjct: 200 KP------------IISTPEGVAPTCVAHYSKD 220


>gi|113461565|ref|YP_719634.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
 gi|112823608|gb|ABI25697.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
          Length = 365

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGV QRR+R++++ 
Sbjct: 173 LNAQYFGVAQRRKRVFLVA 191


>gi|170719036|ref|YP_001784193.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827165|gb|ACA32536.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 365

 Score = 36.4 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGV QRR+R++++ 
Sbjct: 173 LNAQYFGVAQRRKRVFLVA 191


>gi|289669548|ref|ZP_06490623.1| DNA-cytosine methyltransferase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 330

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV 25
           + A D+GVPQ RER  ++       
Sbjct: 145 INAADYGVPQIRERCIVMGIKGRDP 169


>gi|109900394|ref|YP_663649.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109702675|gb|ABG42595.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
          Length = 535

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF----KFPTPLGIKPRLGDILEEHIDDKSTIS-- 54
           +K  DFG+PQRR R+ ++       +        +P   +    D+L +    +S +S  
Sbjct: 249 IKTEDFGIPQRRHRVILLGLREDIADKWDNSLILSPTATQTSTQDVLNDLPKLRSGLSKG 308

Query: 55  ---NKLW-EGHQKRKEN 67
              ++ W E  +  K  
Sbjct: 309 INNDESWVETLKNSKAK 325


>gi|302836690|ref|XP_002949905.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
 gi|300264814|gb|EFJ49008.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
          Length = 2277

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
            + A  FGVPQ R+R +I   L   V  ++PTP  +
Sbjct: 1935 LNAGHFGVPQSRKRTFIWAALPGEVLPEWPTPRHV 1969


>gi|325971313|ref|YP_004247504.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
 gi|324026551|gb|ADY13310.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
          Length = 516

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 2   KACDFGVPQRRERLYIIDFLNP 23
              +FGVPQ RER  +I  L  
Sbjct: 293 NTVNFGVPQLRERFVMIGVLKQ 314


>gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus
           stearothermophilus]
          Length = 1068

 Score = 36.0 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A  +GVPQ R+R++I+         + P P 
Sbjct: 947 LSAEQYGVPQMRKRVFIVA---AKKGLELPKPP 976


>gi|312959258|ref|ZP_07773776.1| DNA (cytosine-5-)-methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286518|gb|EFQ65081.1| DNA (cytosine-5-)-methyltransferase [Pseudomonas fluorescens WH6]
          Length = 741

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           +KACDFG    RERL++I         ++P P   K
Sbjct: 370 LKACDFGAATTRERLFLIA-RRDGKPLRWPEPTHFK 404


>gi|312200730|ref|YP_004020791.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232066|gb|ADP84921.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 464

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A +FGVPQ RERL  +     
Sbjct: 179 VDAANFGVPQTRERLLFLGVRRR 201


>gi|257867242|ref|ZP_05646895.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873577|ref|ZP_05653230.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801298|gb|EEV30228.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807741|gb|EEV36563.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
          Length = 373

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILE 44
           + +  +GVPQRR R++++  F     +F+    L     +   LE
Sbjct: 188 LDSQYWGVPQRRRRIFLVADFR----DFRAREILFDTQGMQSHLE 228


>gi|167761084|ref|ZP_02433211.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC 35704]
 gi|167661318|gb|EDS05448.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC 35704]
          Length = 405

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 17/64 (26%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH------------IDDKST 52
            FGVPQ RER+ I+    P+   +   PL I     D++++             +D K  
Sbjct: 170 HFGVPQLRERVVILGKYEPN---RVDEPLDI--VFHDLIKKEQNSIYDVVKDHPVDKKYA 224

Query: 53  ISNK 56
           IS  
Sbjct: 225 ISEH 228


>gi|20068992|gb|AAM09644.1|AF458984_2 m6 adenine and m5 cytosine DNA methyltransferase [Acinetobacter
           lwoffii]
          Length = 952

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-----PSVEFKFPTPLGI 35
           +    +GVPQ+R+R+ I+           +E  FPTP  +
Sbjct: 873 LNTVHYGVPQKRKRVIILGVHKNLIGSHKIEEFFPTPTTL 912


>gi|91773503|ref|YP_566195.1| DNA-cytosine methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91712518|gb|ABE52445.1| DNA-cytosine methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 569

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 34/114 (29%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG----------DILEEHID--- 48
            A D+G+PQRR+RL I        ++  P P      +           DI + +     
Sbjct: 183 NAADYGIPQRRKRLVI-------GDYPRPDPTHKDKWISLSEVINAFDYDITDPNFGFSI 235

Query: 49  DKSTISNKLWEG-------HQKRKENNKIAGKGFGYG-LFFEN--SATTNTLSA 92
           D   +++  ++         Q R    +       YG + F    S  + T+ A
Sbjct: 236 DTEELTDHFYDTSIHEYDWLQARDRKQQAR----YYGRMAFPEETSVPSRTVMA 285


>gi|328463177|gb|EGF34918.1| cytosine-specific methyltransferase [Lactobacillus rhamnosus MTCC
          5462]
          Length = 240

 Score = 36.0 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 5  DFGVPQRRERLYIIDFLNPSVEFKF 29
          +FGVPQ R+R+ +    N   +F F
Sbjct: 29 EFGVPQERKRIILYGQRNDLPKFSF 53


>gi|161789274|ref|YP_001595753.1| methyl transferase [Vibrio sp. 09022]
 gi|161761495|gb|ABX77139.1| methyl transferase [Vibrio sp. 09022]
          Length = 421

 Score = 36.0 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
            + +FG PQ RER+ II   +     K P  +      G 
Sbjct: 173 NSANFGTPQVRERVVIIASRDGK---KLPYLVPTHSETGS 209


>gi|319782483|ref|YP_004141959.1| DNA-cytosine methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168371|gb|ADV11909.1| DNA-cytosine methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 368

 Score = 36.0 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + A D+G+ QRR+R++I+      
Sbjct: 157 LDARDYGIAQRRKRVFILGLRRGE 180


>gi|313905794|ref|ZP_07839153.1| DNA-cytosine methyltransferase [Eubacterium cellulosolvens 6]
 gi|313469400|gb|EFR64743.1| DNA-cytosine methyltransferase [Eubacterium cellulosolvens 6]
          Length = 427

 Score = 36.0 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
            A  FGV Q R R+ I+ +   +  + +P      
Sbjct: 207 NARTFGVLQNRRRMIIVGWKKGT-NYSYPEFQDKT 240


>gi|260664324|ref|ZP_05865177.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|260562210|gb|EEX28179.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
          Length = 298

 Score = 36.0 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 8   VPQRRERLYIID 19
           VPQ RER+YII 
Sbjct: 156 VPQNRERIYIIG 167


>gi|312794286|ref|YP_004027209.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181426|gb|ADQ41596.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 419

 Score = 36.0 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           + + DF V Q R+R+ ++ +   S  FK+P    I+    
Sbjct: 202 LNSADFLVLQNRKRVILMGWKKGS-NFKYPEFKKIEHNYK 240


>gi|125531419|gb|EAY77984.1| hypothetical protein OsI_33028 [Oryza sativa Indica Group]
          Length = 301

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 14  RLYIIDFLNPSVEF-KFPTPLGIKPRLGDILEEHID----DKSTISNKLWEGHQKRKENN 68
           RL I+ ++ P   F    + +        I E+ ++     K T S  L       KE+N
Sbjct: 233 RLVIVGYIRPEANFPSLESLIERIHEDARIAEKALNLPLYAKYTDSPYLRNSL---KEDN 289

Query: 69  KIAGK 73
              G 
Sbjct: 290 SANGN 294


>gi|309799879|ref|ZP_07694084.1| DNA-cytosine methyltransferase [Streptococcus infantis SK1302]
 gi|308116469|gb|EFO53940.1| DNA-cytosine methyltransferase [Streptococcus infantis SK1302]
          Length = 412

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP--RLGDILEE 45
            +  FGV Q R R+ II +L  +    +P  L  +    + D+L +
Sbjct: 208 NSKHFGVLQNRRRMIIIGWLK-NSGMAYPDFLKKESSFTVNDLLAD 252


>gi|254228592|ref|ZP_04922017.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262392607|ref|YP_003284461.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
 gi|151938974|gb|EDN57807.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262336201|gb|ACY49996.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
          Length = 427

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFK--FPTPLGIKPR 38
           + +  FG PQ R R++I  F  NP   F   + T +G KP+
Sbjct: 152 VNSRFFGAPQSRPRVFICAFRGNPLKAFSTLYETGVGTKPK 192


>gi|313667095|gb|ADR72992.1| M2.BspMI [Bacillus sp. M(2010)]
          Length = 353

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           A DFGVPQ+R R+++I          FP+P  
Sbjct: 161 AADFGVPQQRYRMFMIG-NRVGKPVNFPSPSH 191


>gi|332706962|ref|ZP_08427022.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332354227|gb|EGJ33707.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 450

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTP 32
           + ++G+PQRR+R+ II       +F+ P P
Sbjct: 179 SQEYGIPQRRKRVLIIG-NRLGHDFRIPAP 207


>gi|150024829|ref|YP_001295655.1| modification methyltransferase Sau3AI [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771370|emb|CAL42839.1| Probable modification methyltransferase Sau3AI [Flavobacterium
           psychrophilum JIP02/86]
          Length = 431

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV 25
           + A ++G+PQRR+R++I+ +L  S 
Sbjct: 175 VNAAEYGMPQRRKRIFILAYLQDST 199


>gi|311896967|dbj|BAJ29375.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 676

 Score = 36.0 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 6   FGVPQRRERLYIIDFLNPSVEFKFP---TPLGIKPRLGDI 42
           +GVPQ R+RL ++   N   +F +     P+ ++  + D+
Sbjct: 219 YGVPQHRKRLILLA-RNDVEQFDWEPDQEPVTLREAIADL 257


>gi|323650700|gb|ADX97434.1| M2.BspACI [Bacillus psychrodurans]
          Length = 444

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 28/82 (34%)

Query: 1   MKACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGI------------------------ 35
           + + + GVPQ R+R YI+  ++ PS +F +                              
Sbjct: 229 INSSEAGVPQSRDRTYIVAIMDYPSEDFYYDYRSKKIDILKSELNIFGFKGFNFFSDLVF 288

Query: 36  ---KPRLGDILEEHIDDKSTIS 54
              K  + D++E+ +++K   +
Sbjct: 289 DCVKTVIEDVIEDDVEEKYFFN 310


>gi|229552043|ref|ZP_04440768.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539457|ref|YP_003173956.1| cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc
           705]
 gi|229314620|gb|EEN80593.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151133|emb|CAR90105.1| Cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc
           705]
          Length = 415

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 5   DFGVPQRRERLYIIDFLNPSVEFKF 29
           +FGVPQ R+R+ +    N   +F F
Sbjct: 204 EFGVPQERKRIILYGQRNDLPKFSF 228


>gi|283466067|emb|CBG92842.1| hypothetical protein [Enterococcus casseliflavus]
          Length = 359

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILE 44
           + +   GVPQRR R++++  F     +F+    L     +   LE
Sbjct: 174 LDSQYLGVPQRRRRIFLVADFR----DFRAREILFDTQGMQSHLE 214


>gi|312901967|ref|ZP_07761229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
 gi|311290903|gb|EFQ69459.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
          Length = 412

 Score = 36.0 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + + ++ VPQ+RERL+I      
Sbjct: 194 INSAEYEVPQKRERLFIFGIRKD 216


>gi|315650298|ref|ZP_07903370.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487409|gb|EFU77719.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 644

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  +GVPQRR+R+Y++ 
Sbjct: 195 LDAQYWGVPQRRKRIYLVA 213


>gi|119173265|ref|XP_001239116.1| hypothetical protein CIMG_10138 [Coccidioides immitis RS]
          Length = 626

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------------RLGDILEEHID 48
           +   D+GVPQ+R+RL +I          FP P    P             +GDI E   D
Sbjct: 472 LSCEDYGVPQQRKRLVMIGAGPGEPLPPFPKPTHGPPGSNLLPHRTILDAIGDIPENAPD 531


>gi|167771959|ref|ZP_02444012.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
           17241]
 gi|167665757|gb|EDS09887.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
           17241]
          Length = 520

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 1   MKACDFGVPQRRERLYIID-FLNP---SVEFKFPTPLGIKPRLG 40
           + A  +GVPQRR R+Y++  F +     + F+ P  +   P  G
Sbjct: 177 LDAQFWGVPQRRRRIYLVADFRDDCAAKILFE-PARVFWHPTAG 219


>gi|302531731|ref|ZP_07284073.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302440626|gb|EFL12442.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 357

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + A DFGV Q R+RL++   L 
Sbjct: 164 LNAADFGVAQSRQRLFVTGVLK 185


>gi|166366114|ref|YP_001658387.1| cytosine-specific modification DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166088487|dbj|BAG03195.1| cytosine-specific modification DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 431

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + A D+G+PQ RER+  I    
Sbjct: 208 LFAPDYGIPQTRERIIFIGLNK 229


>gi|308069782|ref|YP_003871387.1| Site-specific DNA methylase [Paenibacillus polymyxa E681]
 gi|305859061|gb|ADM70849.1| Site-specific DNA methylase [Paenibacillus polymyxa E681]
          Length = 204

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           + +   GVPQ+RER++   F+    +  FP 
Sbjct: 113 LNSATMGVPQKRERVF---FIAAREDLPFPP 140


>gi|296535365|ref|ZP_06897565.1| site-specific DNA methylase [Roseomonas cervicalis ATCC 49957]
 gi|296264307|gb|EFH10732.1| site-specific DNA methylase [Roseomonas cervicalis ATCC 49957]
          Length = 337

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A DFGVPQ R R++I
Sbjct: 148 LDASDFGVPQSRRRVFI 164


>gi|282849501|ref|ZP_06258885.1| C-5 cytosine-specific DNA methylase [Veillonella parvula ATCC
           17745]
 gi|282580438|gb|EFB85837.1| C-5 cytosine-specific DNA methylase [Veillonella parvula ATCC
           17745]
          Length = 294

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE-FKFPTPL 33
           + +  +G   +RERL I+   N   + F++P P 
Sbjct: 92  LNSAWYGAATKRERLIIVAIRNDVEDIFEYPQPQ 125


>gi|166366204|ref|YP_001658477.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
 gi|166088577|dbj|BAG03285.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
          Length = 346

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           + +  F +PQ R R +++ F        F+FP     +  +  I+   +    +I
Sbjct: 159 IDSKYFQIPQSRPRFFLLAFRKDLGIKNFQFPQHCHAEVGIEKII---VPGDYSI 210


>gi|220903552|ref|YP_002478864.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867851|gb|ACL48186.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 24/86 (27%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIKPR-------------LGDILEE 45
              DFGVPQ R R+ I           ++++P     +               L +I E 
Sbjct: 143 NVADFGVPQSRFRVIIAGTRKDIPKRLDYEYPAATHAQAPSQGKLPWVTIGEALKEIPEP 202

Query: 46  --------HIDDKSTISNKLWEGHQK 63
                   H   K  I+N+ + GH+K
Sbjct: 203 GDGVALLNHDYSKYKITNRNFTGHRK 228


>gi|296425866|ref|XP_002842459.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638727|emb|CAZ86650.1| unnamed protein product [Tuber melanosporum]
          Length = 857

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           +   ++GVPQ R+RL+++         +FP P    P+  +I
Sbjct: 666 LHGVEYGVPQTRKRLFLLAASPGEELPEFPKPTHAHPKTANI 707


>gi|262038316|ref|ZP_06011702.1| modification methylase spri [Leptotrichia goodfellowii F0264]
 gi|261747667|gb|EEY35120.1| modification methylase spri [Leptotrichia goodfellowii F0264]
          Length = 318

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + + D+GV Q RERLYI+     
Sbjct: 144 LDSLDYGVSQMRERLYIVGIKKE 166


>gi|291535263|emb|CBL08375.1| DNA-methyltransferase (dcm) [Roseburia intestinalis M50/1]
          Length = 350

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           ++G+PQ R R+ I+   N  +V ++ P+P   +
Sbjct: 159 EYGIPQARHRIIIVGIRNNINVTYRVPSPEPYR 191


>gi|255020360|ref|ZP_05292428.1| DNA-cytosine methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970280|gb|EET27774.1| DNA-cytosine methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 449

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLN 22
           + A  FGVPQ R R+ I+   +
Sbjct: 180 LDASLFGVPQSRRRVVIVGIQD 201


>gi|225026529|ref|ZP_03715721.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
 gi|224956143|gb|EEG37352.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
          Length = 461

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
           + A ++G  QRR R++I  + N +   K+   +    R  D LEE 
Sbjct: 173 INAAEYGYQQRRRRIFIFAYKNDT---KYAERILKTIRYTDELEED 215


>gi|66768381|ref|YP_243143.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|66573713|gb|AAY49123.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 512

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 1   MKACDFGVPQRRERLYII-----DFLNPSVEFK 28
           + A  FGV QRR+R++++      F    V F+
Sbjct: 182 LDAQYFGVAQRRKRVFLVASGGDGFDPAEVLFE 214


>gi|323650463|gb|ADX97312.1| M.FspI [Fischerella muscicola SAG 1427-1]
          Length = 385

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A  +G+PQ R R + I  L+  + F  P P       GDI
Sbjct: 155 LNAAHYGIPQTRSRAFFIASLDHYLHF--PKPTH----FGDI 190


>gi|116750223|ref|YP_846910.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699287|gb|ABK18475.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 399

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 1   MKACDFGVPQRRERLYIID--FLNPSVEFKFPTPLGIKPRLGD---ILEEHID 48
           + A D+GVPQ R R +II   F +P   F  P        L +     E+ + 
Sbjct: 163 LCAADYGVPQIRWRAFIIGCLFTDPKKVFP-PKRTNYPTDLNNRRIFAEKEVP 214


>gi|319787207|ref|YP_004146682.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465719|gb|ADV27451.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 443

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A ++GVPQ R+RL+++ 
Sbjct: 155 LNAYEYGVPQDRQRLFLLG 173


>gi|78047842|ref|YP_364017.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036272|emb|CAJ23963.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 512

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 1   MKACDFGVPQRRERLYII-----DFLNPSVEFK 28
           + A  FGV QRR+R++++      F    V F+
Sbjct: 182 LDAQYFGVAQRRKRVFLVASGGDGFDPVKVLFE 214


>gi|300867442|ref|ZP_07112096.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
 gi|300334557|emb|CBN57264.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
          Length = 350

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 1   MKACDFGVPQRRERLYIIDF---LNPSVEFKF----PTPLGIKPRLGDILEEHIDDKSTI 53
           + A  + VPQ R+R+  + +   L     F +       L +K  +GD+ E  I     +
Sbjct: 149 LNAMYYNVPQDRKRVIFVGYHLSLKRRFNFDWVGKSRRILTLKDAIGDLQESVIPA---L 205

Query: 54  SNK 56
           S  
Sbjct: 206 SPN 208


>gi|126658774|ref|ZP_01729918.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
 gi|126619872|gb|EAZ90597.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
          Length = 461

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 2   KACDFGVPQRRERLYIIDFLN-PSVEFKFPTPLGI 35
            + +FG PQ RER+ II   N     F  PT    
Sbjct: 243 NSANFGTPQIRERVIIICSRNGEKPPFLVPTHSEK 277


>gi|291514217|emb|CBK63427.1| DNA-methyltransferase (dcm) [Alistipes shahii WAL 8301]
          Length = 296

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 8   VPQRRERLYIID 19
           +PQ RER+Y++ 
Sbjct: 151 LPQNRERIYLVG 162


>gi|221369948|ref|YP_002521044.1| Modification methylase [Rhodobacter sphaeroides KD131]
 gi|221163000|gb|ACM03971.1| Modification methylase [Rhodobacter sphaeroides KD131]
          Length = 540

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           ++A ++GVPQRR R+ I+   +   +
Sbjct: 237 VRAEEWGVPQRRHRVIIVGIRSDLAD 262


>gi|221065716|ref|ZP_03541821.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
 gi|220710739|gb|EED66107.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
          Length = 202

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1  MKACDFGVPQRRERLYIID 19
          + A D GVPQ R R++II 
Sbjct: 13 VDAADHGVPQHRVRMFIIA 31


>gi|42779446|ref|NP_976693.1| DNA-cytosine methyltransferase family protein [Bacillus cereus ATCC
           10987]
 gi|42735362|gb|AAS39301.1| DNA-cytosine methyltransferase family protein [Bacillus cereus ATCC
           10987]
          Length = 350

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 5   DFGVPQRRERLYIIDFLNP-SVEFKFPT 31
           ++GVPQ R RL I+   +   VEFK P+
Sbjct: 159 EYGVPQARHRLIIVGIRDDIDVEFKVPS 186


>gi|303245411|ref|ZP_07331695.1| DNA-cytosine methyltransferase [Desulfovibrio fructosovorans JJ]
 gi|302493260|gb|EFL53122.1| DNA-cytosine methyltransferase [Desulfovibrio fructosovorans JJ]
          Length = 490

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF-KFPTPLGIK 36
           + +  +GVP+ RER ++I +     E  +FP P    
Sbjct: 188 LNSVHYGVPEMRERAFLIGYAAGIAERIRFPEPTRRH 224


>gi|21225136|ref|NP_630915.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|6900913|emb|CAB71857.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 423

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 1   MKACDFGVPQRRER 14
           + A DFGVPQ R+R
Sbjct: 166 LNAADFGVPQTRKR 179


>gi|284928852|ref|YP_003421374.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
 gi|284809311|gb|ADB95016.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
          Length = 422

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A ++GVPQ R+RL+I+ 
Sbjct: 157 LNAANYGVPQIRKRLFIMG 175


>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
 gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
          Length = 657

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGVPQ R R +++ 
Sbjct: 425 LNATTFGVPQDRTRCFLVA 443


>gi|283782595|ref|YP_003373349.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|283441341|gb|ADB13807.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
          Length = 424

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A D+G+PQRR R+YI          K+P  L
Sbjct: 180 INAADYGMPQRRRRVYIFA---EHDSKKWPNKL 209


>gi|256375192|ref|YP_003098852.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255919495|gb|ACU35006.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 361

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK---PRLGDIL 43
           + A DFGVPQRR R  +I   +   + + P P   +     + D+L
Sbjct: 135 LLAADFGVPQRRRRAIVIG--SRVGKVELPAPTHARESWHAVRDVL 178


>gi|325995748|gb|ADZ51153.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
          Length = 160

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 1   MKACDFGVPQRRERLY 16
           + A D+GVPQ RER+ 
Sbjct: 145 LNALDYGVPQVRERVI 160


>gi|332881189|ref|ZP_08448845.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680863|gb|EGJ53804.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 367

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 8   VPQRRERLYIID 19
           +PQ RER+Y++ 
Sbjct: 151 LPQNRERIYLVG 162


>gi|291007578|ref|ZP_06565551.1| DNA modification methylase M.NGOI [Saccharopolyspora erythraea NRRL
           2338]
          Length = 308

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIK-PRLGDILEEHIDDK 50
           + A  FGVPQRR    I+         F +P       P +GD+L + +  +
Sbjct: 134 LDAQRFGVPQRRPHGLIVGMAPEHLARFSWPVGNDHGAPTVGDVLRKSMASR 185


>gi|134098143|ref|YP_001103804.1| DNA modification methylase M.NGOI [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910766|emb|CAM00879.1| DNA modification methylase M.NGOI [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPTPLGIK-PRLGDILEEHIDDK 50
           + A  FGVPQRR    I+         F +P       P +GD+L + +  +
Sbjct: 60  LDAQRFGVPQRRPHGLIVGMAPEHLARFSWPVGNDHGAPTVGDVLRKSMASR 111


>gi|256847840|ref|ZP_05553285.1| DNA-cytosine methyltransferase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715529|gb|EEU30505.1| DNA-cytosine methyltransferase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 349

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 5   DFGVPQRRERLYIIDFLNP 23
           D+GVPQ R R+ ++   N 
Sbjct: 158 DYGVPQARHRIIVVGIRND 176


>gi|86142380|ref|ZP_01060890.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831132|gb|EAQ49589.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
           blandensis MED217]
          Length = 332

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP-LGIKPRLGDILEEHIDDK 50
           + + D+GVPQ R+R+  I   N      FP   +     + + L  +   K
Sbjct: 155 LNSADYGVPQVRKRVIFIGTKNSQKIL-FPKKEVDKYVTVKEALSSYPKLK 204


>gi|303324183|ref|XP_003072079.1| C-5 cytosine methyltransferase DmtA, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111789|gb|EER29934.1| C-5 cytosine methyltransferase DmtA, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 535

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------------RLGDILEEHID 48
           +   D+GVPQ+R+RL +I          FP P    P             +GDI E   D
Sbjct: 415 LSCEDYGVPQQRKRLVMIGAGPGEPLPPFPKPTHGPPGSNLLPHRTILDAIGDIPENAPD 474


>gi|261381417|ref|ZP_05985990.1| DNA (cytosine-5-)-methyltransferase [Neisseria subflava NJ9703]
 gi|284795594|gb|EFC50941.1| DNA (cytosine-5-)-methyltransferase [Neisseria subflava NJ9703]
          Length = 420

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           + A D+G  Q R+R+ ++        F +P     KP +
Sbjct: 197 LNANDYGALQARKRIILVGRRGHQTGF-YPQLEIDKPNV 234


>gi|332879681|ref|ZP_08447373.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682372|gb|EGJ55277.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 299

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 8   VPQRRERLYIID 19
           +PQ RER+Y++ 
Sbjct: 151 LPQNRERIYLVG 162


>gi|119488852|ref|ZP_01621814.1| NgoIM [Lyngbya sp. PCC 8106]
 gi|119455013|gb|EAW36155.1| NgoIM [Lyngbya sp. PCC 8106]
          Length = 385

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           +    FG+PQ R+R++I+ 
Sbjct: 144 INPLHFGIPQNRDRVFILG 162


>gi|29566860|ref|NP_818425.1| gp127 [Mycobacterium phage Omega]
 gi|29425585|gb|AAN12767.1| gp127 [Mycobacterium phage Omega]
          Length = 247

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A   GVPQRR R++I+ 
Sbjct: 150 LDAQFTGVPQRRRRIFIVG 168


>gi|186686332|ref|YP_001869528.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186468784|gb|ACC84585.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 331

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 7   GVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKL-WEGHQKR 64
           GVPQ+R+R +    L    E       G++P L   L +     +  + NKL  + + + 
Sbjct: 161 GVPQKRKRFFCFGELQGKDE-------GLEPYLKKRLADKPMTIRDYLGNKLEIQYYYRH 213

Query: 65  KENNKIAGKGFGYGLFFENSATTN 88
             + +  G    + +  E S T  
Sbjct: 214 PRSYQRRGI---FSI-DEPSPTVR 233


>gi|86131659|ref|ZP_01050257.1| DNA (cytosine-5-)-methyltransferase [Dokdonia donghaensis MED134]
 gi|85818104|gb|EAQ39272.1| DNA (cytosine-5-)-methyltransferase [Dokdonia donghaensis MED134]
          Length = 409

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 13/52 (25%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTI 53
           K+  FGV Q+R R+ +I +   S  FK+P              E +D+K TI
Sbjct: 196 KSEHFGVLQKRRRIILIGWQKGS-GFKYPE------------FEELDEKFTI 234


>gi|50365124|ref|YP_053549.1| modification methylase Sau3AI (GATC cytosine-specific
           methyltransferase) [Mesoplasma florum L1]
 gi|50363680|gb|AAT75665.1| modification methylase Sau3AI (GATC cytosine-specific
           methyltransferase) [Mesoplasma florum L1]
          Length = 404

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 30  PTPLGIKPRLGDILEEHIDDKSTISNKLWEG---HQKRKENNKIAGKG 74
           P   G + +L DILE+ +DD   ++ +  +     +  K+  +    G
Sbjct: 252 PLFKGKQKKLKDILEDKVDDSYFLTEEQIQKISILKDSKKIPRTKPNG 299


>gi|320037073|gb|EFW19011.1| hypothetical protein CPSG_04557 [Coccidioides posadasii str.
           Silveira]
          Length = 607

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP------------RLGDILEEHID 48
           +   D+GVPQ+R+RL +I          FP P    P             +GDI E   D
Sbjct: 415 LSCEDYGVPQQRKRLVMIGAGPGEPLPPFPKPTHGPPGSNLLPHRTILDAIGDIPENAPD 474


>gi|54026007|ref|YP_120249.1| hypothetical protein nfa40370 [Nocardia farcinica IFM 10152]
 gi|54017515|dbj|BAD58885.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 592

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL 39
           + +  FGVPQ R+RLYI+ F +     + P P      L
Sbjct: 199 LNSMFFGVPQSRDRLYIV-FWDR----RMPAPDLEHRPL 232


>gi|292670760|ref|ZP_06604186.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647381|gb|EFF65353.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 476

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  +GVPQRR R++++ 
Sbjct: 168 LDAQYWGVPQRRRRIFLVA 186


>gi|209546991|ref|YP_002278909.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538235|gb|ACI58169.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 355

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 1   MKACDFGVPQRRERLYII 18
           + A DFG PQRR R YI+
Sbjct: 147 LNAADFGCPQRRSR-YIV 163


>gi|34014717|dbj|BAC81824.1| methylase [Acidocella facilis]
          Length = 443

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPL 33
           + A +FG PQ+R+RL +       V   +P P 
Sbjct: 154 LDASNFGTPQKRQRLILFGAKKGLVLPDYPAPT 186


>gi|332158207|ref|YP_004423486.1| modification methylase [Pyrococcus sp. NA2]
 gi|331033670|gb|AEC51482.1| modification methylase [Pyrococcus sp. NA2]
          Length = 310

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           + + D+GVPQ R R++I      ++E K P  +    R+ D+L++   D    +N+LW 
Sbjct: 155 LNSLDYGVPQIRRRVFI-----SNIELK-PRKVRGPNRVWDVLKDVPPD--APNNELWN 205


>gi|291439417|ref|ZP_06578807.1| DNA modification methylase M.NGOI [Streptomyces ghanaensis ATCC
           14672]
 gi|291342312|gb|EFE69268.1| DNA modification methylase M.NGOI [Streptomyces ghanaensis ATCC
           14672]
          Length = 338

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 1   MKACDFGVPQRRERL--YIIDFLNPSVE-FKFPTPL 33
           + A DFGVPQ  ERL   ++    P    F  PTP 
Sbjct: 143 LNAADFGVPQ--ERLQGVLVALKKPWGRTFTPPTPT 176


>gi|239931046|ref|ZP_04687999.1| putative 5-methylcytosine methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 345

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 1   MKACDFGVPQRRERL--YIIDFLNPSVE-FKFPTPL 33
           + A DFGVPQ  ERL   ++    P    F  PTP 
Sbjct: 150 LNAADFGVPQ--ERLQGVLVALKKPWGRTFTPPTPT 183


>gi|182438468|ref|YP_001826187.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466984|dbj|BAG21504.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 448

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIID-FLNPSVEFKFPTPLGIKPRLGDILE 44
           +   DFGVPQ R R  +I  F   +V  K   P     R     E
Sbjct: 199 LHTEDFGVPQTRRRAVLIAQFDPENVHRKVRFPEATHQRYRKGAE 243


>gi|167725800|ref|ZP_02409036.1| putative cytosine-specific modification methylase [Burkholderia
           pseudomallei DM98]
          Length = 661

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACD+G P  R+RL+++      +   +PTP    P+
Sbjct: 208 LRACDYGTPTIRKRLFVVG-RRDHLPIVWPTPTHGDPK 244


>gi|163716644|gb|ABY40554.1| putative site-specific DNA methylase [Burkholderia phage Bups phi1]
          Length = 334

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACD+G P  R+RL+++      +   +PTP    P+
Sbjct: 208 LRACDYGTPTIRKRLFVVG-RRDHLPIVWPTPTHGDPK 244


>gi|254191931|ref|ZP_04898431.1| DNA cytosine methyltransferase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157987753|gb|EDO95518.1| DNA cytosine methyltransferase [Burkholderia pseudomallei Pasteur
           52237]
          Length = 661

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACD+G P  R+RL+++      +   +PTP    P+
Sbjct: 208 LRACDYGTPTIRKRLFVVG-RRDHLPIVWPTPTHGDPK 244


>gi|91203606|emb|CAJ71259.1| similar to HhaI Dna (cytosine-C5-)-methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 416

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKF 29
           A +FGV Q R+R+ II +    + F F
Sbjct: 193 AKEFGVLQNRKRVIIIGWKKD-LNFSF 218


>gi|13358092|ref|NP_078366.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|170762087|ref|YP_001752613.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171920252|ref|ZP_02931618.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701746|ref|ZP_02971433.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|11356834|pir||D82880 cytosine-specific methyltransferase UU528 [imported] - Ureaplasma
           urealyticum
 gi|6899531|gb|AAF30941.1|AE002151_7 cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827664|gb|ACA32926.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171902654|gb|EDT48943.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701017|gb|EDU19299.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 299

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 31/112 (27%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---------EFKFPTPLGIKPRLGDILEEHID-DK 50
           + A D+G  QRR+R+Y I  LN            + + P   G + +L D+L+ +   +K
Sbjct: 107 LNALDYGSAQRRKRVYAISILNYDGLIDSNGNILDLEAPIFDGKQKQLKDVLKTNYKIEK 166

Query: 51  STISNKL---------WEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSAR 93
                 L          +    +            Y L   N   T+T++ R
Sbjct: 167 YYQEAYLAQPNRTFSRIKYVIPK------------YDLLNPNCYCTSTITTR 206


>gi|295395774|ref|ZP_06805962.1| short-chain fatty acid transporter [Brevibacterium mcbrellneri
          ATCC 49030]
 gi|294971309|gb|EFG47196.1| short-chain fatty acid transporter [Brevibacterium mcbrellneri
          ATCC 49030]
          Length = 289

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 17 IIDFLNPSVEFKF--PTPLGIKPRLGDILEEHIDDK 50
          I+ FL     F F  P P  I P  GDI E   D K
Sbjct: 41 IVGFLGIYAGFAFMAPKPNEIIPLNGDIAEPPADPK 76


>gi|16331413|ref|NP_442141.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|1001584|dbj|BAA10211.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
          Length = 424

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKST 52
           + A  +G PQ+R+RL I+          +P PL     + ++ + +  +KS 
Sbjct: 157 LDASLYGAPQKRKRLIILGSRKDVKPVTYPLPLYF--DVAELKQSNCSEKSV 206


>gi|306829494|ref|ZP_07462684.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428580|gb|EFM31670.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 389

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIKPRLGDI------LEEHIDDK 50
           +   D+G+PQ R+R +Y++   +  V+++FP        L D       L+  I +K
Sbjct: 164 VNTMDYGIPQSRQRYIYLMTLKSEGVKWEFPPKEEKIITLQDAIGSLPSLDPQIREK 220


>gi|270307689|ref|YP_003329747.1| DNA-cytosine methyltransferase [Dehalococcoides sp. VS]
 gi|270153581|gb|ACZ61419.1| DNA-cytosine methyltransferase [Dehalococcoides sp. VS]
          Length = 365

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)

Query: 1   MKACDFGVPQRRER-LYI 17
           + A ++GVPQRRER +YI
Sbjct: 167 LDAGNYGVPQRRERLIYI 184


>gi|269123998|ref|YP_003306575.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268315324|gb|ACZ01698.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 438

 Score = 35.3 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEH 46
           + + +FG+ Q R+R+YI+   +  +  +            DI E++
Sbjct: 164 LDSIEFGLAQSRKRIYIVGTKDKLISLE--NFDKKYSSFRDIQEKN 207


>gi|57505223|ref|ZP_00371152.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
           upsaliensis RM3195]
 gi|57016359|gb|EAL53144.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
           upsaliensis RM3195]
          Length = 326

 Score = 35.3 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIKPRLGDILEEH 46
           + + DF + Q RER+Y I         F F +       L D L   
Sbjct: 145 LNSLDFELAQSRERVYFIGIKEDKKCYFNF-SKNASHKDLKDFLNPD 190


>gi|289608986|emb|CBI60514.1| unnamed protein product [Sordaria macrospora]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 1  MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
          ++A D+GVPQ R R+  I          FP P   K
Sbjct: 41 LRAEDYGVPQERRRVVFIA-NRVGAPILFPEPTHGK 75


>gi|317506240|ref|ZP_07964059.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255486|gb|EFV14737.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 347

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFP 30
           + A  FGVPQ R+R  +I      VE  +P
Sbjct: 149 LDASYFGVPQSRKRAVLIASRLGKVELPWP 178


>gi|145604116|ref|XP_360423.2| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145012186|gb|EDJ96842.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 16/99 (16%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           A  FG+PQRRE + ++      +    P P   +P      E   D    + + L    +
Sbjct: 81  AGSFGLPQRREHIIVLAVRKDLI----PGPFSPRPA-----ERDPDQTLELKDFLLSY-E 130

Query: 63  KRKENNKIA--GKGFGYGLFFE----NSATTNTLSARYY 95
           +    NK      G    +       N      + +R Y
Sbjct: 131 EYLRLNKDRYWPNGMVPQMVDGVLCLNEDEVRPIGSRIY 169


>gi|329122250|ref|ZP_08250838.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327473811|gb|EGF19228.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 387

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FG+ QRR+R++++ 
Sbjct: 173 LNAQYFGLAQRRKRVFLVA 191


>gi|319428134|gb|ADV56208.1| DNA-cytosine methyltransferase [Shewanella putrefaciens 200]
          Length = 305

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS-VEFKFPT 31
           + A    VPQ RERL+I+   + + +E K PT
Sbjct: 144 INAKTLQVPQSRERLFIVATRSQNPIELKLPT 175


>gi|325997344|gb|ADZ49552.1| Type II DNA modification enzyme [Helicobacter pylori 2017]
          Length = 159

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 1   MKACDFGVPQRRERL 15
           + A D+GVPQ RER+
Sbjct: 145 LNALDYGVPQVRERV 159


>gi|257882475|ref|ZP_05662128.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,502]
 gi|294620467|ref|ZP_06699776.1| methyl transferase [Enterococcus faecium E1679]
 gi|294623872|ref|ZP_06702700.1| methyl transferase [Enterococcus faecium U0317]
 gi|257818133|gb|EEV45461.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
           1,231,502]
 gi|291593380|gb|EFF24945.1| methyl transferase [Enterococcus faecium E1679]
 gi|291596826|gb|EFF28049.1| methyl transferase [Enterococcus faecium U0317]
          Length = 380

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + +  + VPQ RER+++I 
Sbjct: 147 LNSKAY-VPQSRERIFLIG 164


>gi|320109274|ref|YP_004184864.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927795|gb|ADV84870.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 409

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)

Query: 2   KACDFGVPQRRER-LYI 17
              +FGVPQ RER ++I
Sbjct: 179 NTANFGVPQSRERLIFI 195


>gi|290999391|ref|XP_002682263.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
 gi|284095890|gb|EFC49519.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
          Length = 1527

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 1    MKACDFGVPQRRERLYIIDFLNPSVEF--KFPTPLGIKPRLGDILEEHIDDK 50
            + A  FG+PQ R R+               FP       ++  +L+     K
Sbjct: 1115 VNAQHFGLPQTRTRVIFFGARKDENLKVPDFPKNTHASHKVSAVLDNASQVK 1166


>gi|115525257|ref|YP_782168.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519204|gb|ABJ07188.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisA53]
          Length = 589

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           +KA ++GVPQ R R++I+     
Sbjct: 309 VKAEEYGVPQARHRMFIVGIRED 331


>gi|22256926|sp|O33481|MTP1_PSYTA RecName: Full=Modification methylase PspPI; Short=M.PspPI; AltName:
           Full=Cytosine-specific methyltransferase PspPI
 gi|2558610|emb|CAA68841.1| type II DNA m5C-methyltransferase [Psychrobacter sp.]
          Length = 416

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVE---FKFPTPLGIKPRLGDIL 43
           KA  + VPQ+RERL II       +   ++ P+P      + D L
Sbjct: 222 KAIFYKVPQKRERLIIIGVRTDLYDKLAYEKPSPYYKVLTVADAL 266


>gi|123965753|ref|YP_001010834.1| putative carboxypeptidase [Prochlorococcus marinus str. MIT 9515]
 gi|123200119|gb|ABM71727.1| Putative carboxypeptidase [Prochlorococcus marinus str. MIT 9515]
          Length = 290

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 17  IIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFG 76
           I+ FL  +  F  P   G      DI E    D   I +++    +  K+ N+IAG GFG
Sbjct: 171 IVSFLIGTNHF--PELKGKIIIFEDINE----DIYKI-DRMLTYLRMTKKLNEIAGIGFG 223


>gi|301165798|emb|CBW25370.1| conserved hypothetical exported protein [Bacteriovorax marinus SJ]
          Length = 940

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 30  PTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKGFGYGLFFENSATTNT 89
           PT    K   GD+      DK  I    W            AG GFG  L  +N     T
Sbjct: 593 PTKHYEKHEYGDL------DKGVIVPHSWSFF---------AGNGFGLSLTTDN--YLRT 635

Query: 90  LS--ARYYKDGSE 100
           L   A+  KDGSE
Sbjct: 636 LGIFAQVGKDGSE 648


>gi|294155594|ref|YP_003559978.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291600134|gb|ADE19630.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 388

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 8   VPQRRERLYIID-FLNPSVEFKFP-----TPLGIKPRLGDILEEH-IDDKSTIS---NKL 57
           +PQ RER++II  +   +++                 + DI++++ ++DK  IS   +KL
Sbjct: 155 IPQLRERVFIIGKYDLDNIDKDLIINNSTYSKKNDNSIYDIIDKNKVEDKYYISKAEDKL 214

Query: 58  WEG 60
            E 
Sbjct: 215 LET 217


>gi|78778049|ref|YP_394364.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498589|gb|ABB45129.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 435

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS 24
           + A D+G+PQRR R++I+ + N +
Sbjct: 187 INASDYGMPQRRRRVFIMAYKNGT 210


>gi|302187943|ref|ZP_07264616.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
           syringae pv. syringae 642]
          Length = 307

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 4   CDFGVPQRRERLYIID 19
            D GVPQ R RL+++ 
Sbjct: 147 ADLGVPQHRVRLFLVC 162


>gi|28869583|ref|NP_792202.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852825|gb|AAO55897.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 295

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 4   CDFGVPQRRERLYIID 19
            D GVPQ R RL+++ 
Sbjct: 147 ADLGVPQHRVRLFLVC 162


>gi|186476672|ref|YP_001858142.1| C-5 cytosine-specific DNA methylase [Burkholderia phymatum STM815]
 gi|184193131|gb|ACC71096.1| C-5 cytosine-specific DNA methylase [Burkholderia phymatum STM815]
          Length = 535

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACDFG P  R+RL+++      +   +PTP    P+
Sbjct: 173 LRACDFGAPTIRKRLFLVA-RRDHLPIVWPTPTHGDPK 209


>gi|329937997|ref|ZP_08287479.1| putative 5-methylcytosine methyltransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329302954|gb|EGG46843.1| putative 5-methylcytosine methyltransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 312

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 1   MKACDFGVPQRRERLYIIDF-LNPSVEFKFPTPLGIKP-RLGDILEEHIDDK 50
           + A  FGVPQ R++  ++    + +  ++ P P   +P  +G  LE  +  +
Sbjct: 130 VNAVAFGVPQNRKQGVLVAVERSCAGAYRPPAPTVTRPQTVGAALEASMAAR 181


>gi|167841732|ref|ZP_02468416.1| putative cytosine-specific modification methylase [Burkholderia
           thailandensis MSMB43]
          Length = 587

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACD+G P  R+RL+++      +   +P P    P+
Sbjct: 208 LRACDYGAPTIRKRLFVVG-RRDHLPIVWPAPTHGDPK 244


>gi|331085772|ref|ZP_08334855.1| hypothetical protein HMPREF0987_01158 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406695|gb|EGG86200.1| hypothetical protein HMPREF0987_01158 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 411

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 5   DFGVPQRRERLYIIDFLN 22
           +FGVPQ R+R+ I     
Sbjct: 192 EFGVPQNRKRIIIFGVSK 209


>gi|261363795|ref|ZP_05976678.1| C-5 cytosine-specific DNA methylase family protein [Neisseria
           mucosa ATCC 25996]
 gi|288568375|gb|EFC89935.1| C-5 cytosine-specific DNA methylase family protein [Neisseria
           mucosa ATCC 25996]
          Length = 530

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIK 36
           + A D+G P  RERL+++      +   +P P   +
Sbjct: 200 LCAADYGAPTTRERLFMVA-RRDGLPIVWPEPTHFR 234


>gi|17228429|ref|NP_484977.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17130280|dbj|BAB72891.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 477

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
              ++GVPQ RER+ +I         K P        +GD 
Sbjct: 244 NTANYGVPQIRERVVMICHRGKD---KVPYLCPTHSEMGDF 281


>gi|318057151|ref|ZP_07975874.1| DNA-cytosine methyltransferase [Streptomyces sp. SA3_actG]
 gi|318076183|ref|ZP_07983515.1| DNA-cytosine methyltransferase [Streptomyces sp. SA3_actF]
          Length = 386

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ R R + I    +     + P P   +
Sbjct: 155 LNAADYGVPQARRRAIVIATRRDLGEPLRHPIPTHRR 191


>gi|119509253|ref|ZP_01628403.1| DNA-cytosine methyltransferase family protein [Nodularia spumigena
           CCY9414]
 gi|119466095|gb|EAW46982.1| DNA-cytosine methyltransferase family protein [Nodularia spumigena
           CCY9414]
          Length = 418

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPT 31
           M A  + +PQ R RL++      + +F FP 
Sbjct: 238 MNAASYSIPQNRNRLFVFG-HRTANQFVFPE 267


>gi|297194175|ref|ZP_06911573.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152146|gb|EFH31551.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 328

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPL 33
           + A DFGVPQ R++  ++         F  P P 
Sbjct: 150 LNAADFGVPQDRKQGILVALKKEWFHAFTPPVPT 183


>gi|228918462|ref|ZP_04081908.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228949261|ref|ZP_04111525.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810387|gb|EEM56744.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228841185|gb|EEM86381.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 413

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 31  TPLGIKPRLGDILEEHIDDKSTISNKLW---EGHQKRKENNKIAGKGFGY-----GLFFE 82
                   L  ILE+++DDK  +S       E  +  K+  + A  G  Y     G+ F 
Sbjct: 257 AIEESPIPLRSILEKNVDDKYYLSEMAIEKFEYLKGPKKIERTAASGHKYIFSEGGMAFP 316

Query: 83  N--SATTNTL 90
                   T+
Sbjct: 317 ELLDKPGRTI 326


>gi|189233760|ref|XP_001814230.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase
           [Tribolium castaneum]
          Length = 1187

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL---GDILEEHIDD-KSTISNKLW 58
           A +FGVPQ R R  +I     +  ++ P     +      G  L+ ++D  K T +   W
Sbjct: 891 AGEFGVPQARRRFILIA---SAPGYQLPRIPEPQHVFLQRGSRLDIYVDGVKYT-NGNFW 946

Query: 59  EGHQKRKENN 68
                 +  +
Sbjct: 947 TQSAPYRMLH 956


>gi|299769738|ref|YP_003731764.1| C-5 cytosine-specific DNA methylase [Acinetobacter sp. DR1]
 gi|298699826|gb|ADI90391.1| C-5 cytosine-specific DNA methylase [Acinetobacter sp. DR1]
          Length = 492

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           MKACD+G P  R R +++     ++  ++P P    P+
Sbjct: 171 MKACDYGSPTIRRRFFMVA-RRDNLAIEWPKPTHADPK 207


>gi|270015149|gb|EFA11597.1| DNA methyltransferase 1 [Tribolium castaneum]
          Length = 1882

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRL---GDILEEHIDD-KSTISNKLW 58
           A +FGVPQ R R  +I     +  ++ P     +      G  L+ ++D  K T +   W
Sbjct: 909 AGEFGVPQARRRFILIA---SAPGYQLPRIPEPQHVFLQRGSRLDIYVDGVKYT-NGNFW 964

Query: 59  EGHQKRKENN 68
                 +  +
Sbjct: 965 TQSAPYRMLH 974


>gi|227431295|ref|ZP_03913348.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352888|gb|EEJ43061.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 353

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTP---LGIKPRLGDILEEHIDDKSTISNKL 57
           + A D+GV Q R R  II     ++++ +P     + ++  +GD+      +KS+I    
Sbjct: 163 LNAKDYGVGQSRPR-AIIKLYKKNIKWPWPKQEKEISLQESIGDLPSLQPGEKSSIK--- 218

Query: 58  WEGHQK------RKENNKIAG 72
           W   +K          +   G
Sbjct: 219 WHYAKKCRPQIEEALKHTATG 239


>gi|119513855|ref|ZP_01632813.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
           spumigena CCY9414]
 gi|119461493|gb|EAW42572.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
           spumigena CCY9414]
          Length = 318

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A  +G+PQ R R + +  L+ S+ F  P P       GDI
Sbjct: 155 LNAAHYGIPQTRSRAFFLASLDNSLHF--PEPTN----FGDI 190


>gi|168070728|ref|XP_001786917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660176|gb|EDQ48269.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 290

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 1   MKACDFGVPQRRER 14
           + A DFGVPQ R R
Sbjct: 277 INAMDFGVPQNRNR 290


>gi|333024773|ref|ZP_08452837.1| putative DNA-cytosine methyltransferase [Streptomyces sp. Tu6071]
 gi|332744625|gb|EGJ75066.1| putative DNA-cytosine methyltransferase [Streptomyces sp. Tu6071]
          Length = 386

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIK 36
           + A D+GVPQ R R + I    +     + P P   +
Sbjct: 155 LNAADYGVPQARRRAIVIATRRDLGEPLRHPIPSHRR 191


>gi|332878260|ref|ZP_08445986.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683711|gb|EGJ56582.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 424

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           A ++GV Q R+R+ I+ +   S  +K+P            L + ++    + +   +
Sbjct: 201 ASEYGVLQNRQRVIIVGWKKGSP-YKYPY-----------LTKEVNKYEVLKDLFID 245


>gi|331082114|ref|ZP_08331242.1| hypothetical protein HMPREF0992_00166 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405709|gb|EGG85239.1| hypothetical protein HMPREF0992_00166 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 523

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI 35
           + +  F VPQ RER+Y I  L      K     G 
Sbjct: 174 INSKWF-VPQNRERIYTIGHLRRYGSRKILPVTGT 207


>gi|313142342|ref|ZP_07804535.1| LOW QUALITY PROTEIN: cytosine specific DNA methyltransferase
          [Helicobacter canadensis MIT 98-5491]
 gi|313131373|gb|EFR48990.1| LOW QUALITY PROTEIN: cytosine specific DNA methyltransferase
          [Helicobacter canadensis MIT 98-5491]
          Length = 232

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 1  MKACDFGVPQRRERLYIIDFLN---PSVEFKF 29
          +   DFG+   RER+Y +   N    + +F F
Sbjct: 56 LNTIDFGLAHSRERVYFVGIHNIMDKNFDFMF 87


>gi|213692399|ref|YP_002322985.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523860|gb|ACJ52607.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458540|dbj|BAJ69161.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 401

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 1   MKACDFGVPQRRERLYII 18
           + A  FGV QRRER++++
Sbjct: 148 LDAQFFGVAQRRERVFLV 165


>gi|154486240|ref|ZP_02027647.1| hypothetical protein BIFADO_00043 [Bifidobacterium adolescentis
          L2-32]
 gi|154084103|gb|EDN83148.1| hypothetical protein BIFADO_00043 [Bifidobacterium adolescentis
          L2-32]
          Length = 220

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 1  MKACDFGVPQRRERLYII 18
          + A  FGV QRRER++++
Sbjct: 2  LDAQFFGVAQRRERVFLV 19


>gi|328947445|ref|YP_004364782.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447769|gb|AEB13485.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 445

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 1   MKACDFGVPQRRERLYIID----FLNPSVEFK 28
           + A  FG+PQ+R RLY++     F   ++ F+
Sbjct: 175 LDAKYFGLPQQRRRLYVVAGGKDFSPENILFE 206


>gi|329940565|ref|ZP_08289846.1| restriction/modification system DNA methylase [Streptomyces
           griseoaurantiacus M045]
 gi|329300626|gb|EGG44523.1| restriction/modification system DNA methylase [Streptomyces
           griseoaurantiacus M045]
          Length = 350

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 1   MKACDFGVPQRRER 14
           + A DFGVPQ R R
Sbjct: 93  LNAADFGVPQTRRR 106


>gi|290957787|ref|YP_003488969.1| restriction/modification system DNA methylase [Streptomyces scabiei
           87.22]
 gi|260647313|emb|CBG70418.1| putative restriction/modification system DNA methylase
           [Streptomyces scabiei 87.22]
          Length = 424

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 1   MKACDFGVPQRRER 14
           + A DFGVPQ R R
Sbjct: 167 LNAADFGVPQTRRR 180


>gi|53728781|ref|ZP_00135132.2| COG0270: Site-specific DNA methylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 354

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGV QRR+R++++ 
Sbjct: 173 INAQYFGVAQRRKRVFLVA 191


>gi|217966224|ref|YP_002351902.1| hypothetical protein LMHCC_2957 [Listeria monocytogenes HCC23]
 gi|217335494|gb|ACK41288.1| hypothetical protein LMHCC_2957 [Listeria monocytogenes HCC23]
          Length = 192

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 39  LGDILEEHIDDKSTISNKLWEGHQK 63
           L DILEE +D+K  +S K  E   K
Sbjct: 138 LSDILEEQVDEKYFLSQKHLERLMK 162


>gi|89055380|ref|YP_510831.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
 gi|88864929|gb|ABD55806.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
          Length = 373

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           ++A D+GVPQ R R+  I 
Sbjct: 153 LRAEDYGVPQERRRVVFIG 171


>gi|212633712|ref|YP_002310237.1| site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
 gi|212555196|gb|ACJ27650.1| Site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
          Length = 475

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGD 41
            + +FG PQ RER+ II   +     K P  +      G 
Sbjct: 245 NSANFGTPQIRERVIIICSRD---GVKPPYLVPTHSEFGS 281


>gi|169544173|ref|YP_001692948.1| methylase [Yersinia enterocolitica]
 gi|168218357|emb|CAP20100.1| methylase [Yersinia enterocolitica]
          Length = 481

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 21/109 (19%)

Query: 1   MKACDFGVPQRRERLYIID----------FLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
           + + D+G  + R+R+ +I           + +  + F           L DI E   DD 
Sbjct: 298 IDSRDYGSIEERKRMLVIGVSVGLTNVVSYFDDEIAF---YKKECIQTLNDIFEPIADDH 354

Query: 51  STISNKLWE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
                  W+       ++  +  AGKGF   L   ++    T+   Y+K
Sbjct: 355 -----TAWKEYSYLADKEIRDLKAGKGFKRQLLTGDNNKCGTIGRGYHK 398


>gi|218905512|ref|YP_002453346.1| modification methylase ScrFIB [Bacillus cereus AH820]
 gi|218536933|gb|ACK89331.1| modification methylase ScrFIB [Bacillus cereus AH820]
          Length = 324

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR-LGDILEEHIDDKSTISNKLWE 59
           + A  FGVP  RER++ I  L     F F        R + + +E   DDK   S  L  
Sbjct: 146 LDARKFGVPHARERVFCISLLGGKA-FDFNKLRFKPMRDIKEFMEYGPDDK-IPSQYLIN 203


>gi|83950654|ref|ZP_00959387.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius nubinhibens ISM]
 gi|83838553|gb|EAP77849.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius nubinhibens ISM]
          Length = 504

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           ++A D GVPQ R R+ ++       E
Sbjct: 229 LRAEDHGVPQARHRVIVVGVRKDVAE 254


>gi|224437470|ref|ZP_03658432.1| site-specific DNA-methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 418

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILE 44
           + A  +G   +RERL I+    +   +F +P P      +G  L+
Sbjct: 215 LNAAWYGAATKRERLIIVATRADLKGDFSYPLPRFYDESIGTKLD 259


>gi|304407248|ref|ZP_07388901.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus YK9]
 gi|304343689|gb|EFM09530.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus YK9]
          Length = 401

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           +KA +FGVPQ RER+  +     
Sbjct: 165 VKAVEFGVPQSRERVIFLGVRKD 187


>gi|293369629|ref|ZP_06616207.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
 gi|292635333|gb|EFF53847.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC 3f]
          Length = 296

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 8   VPQRRERLYIID--FLNPSVE-FKFPTPLGIKPRLGD 41
           +PQ RER+Y++       + + F FP P G+  ++G 
Sbjct: 151 LPQNRERMYLVGRAAKKCTADIFPFPAPGGMYGKVGS 187


>gi|2894386|emb|CAA74996.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
           (C1) [Bacillus pumilus]
          Length = 398

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF 27
           + A DFG+PQ R R +++  L P  + 
Sbjct: 157 INAADFGIPQERIRFFMVASLGPVPDL 183


>gi|304390603|ref|ZP_07372556.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326359|gb|EFL93604.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 309

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 1   MKACDFGVPQRRERLYII-------DFLNPSVEFKF-PTPLGIKPRLGDIL 43
           + A   GVPQ R+R++++        FL+  +E    P P+ I   LGD L
Sbjct: 148 LDAAYCGVPQSRKRMFVVGGQKEDDGFLDAELERALSPEPMSIFNYLGDSL 198


>gi|75812889|ref|YP_320506.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75705645|gb|ABA25317.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 415

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
           + A D+GVPQ R+R++ +           P     +  + D + +
Sbjct: 161 LTASDYGVPQARKRVFFVA---SKFGEIIPPEHQPQHTVRDAIAD 202


>gi|313143922|ref|ZP_07806115.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313128953|gb|EFR46570.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 294

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILE 44
           + A  +G   +RERL I+    +   +F +P P      +G  L+
Sbjct: 91  LNAAWYGAATKRERLIIVATRADLKGDFSYPLPRFYDESIGTKLD 135


>gi|57242036|ref|ZP_00369976.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
           upsaliensis RM3195]
 gi|57017228|gb|EAL54009.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
           upsaliensis RM3195]
          Length = 294

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKFPTPLGIKPRLGDILE 44
           + A  +G   +RERL I+    +   +F +P P      +G  L+
Sbjct: 91  LNAAWYGAATKRERLIIVATRADLKGDFSYPLPRFYDESIGTKLD 135


>gi|308275289|emb|CBX31885.1| hypothetical protein N47_O13040 [uncultured Desulfobacterium sp.]
          Length = 423

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP--RLGDILEE 45
           + A D+GV Q+R+R+ +         F FP P   KP   + +IL++
Sbjct: 202 ISANDYGVLQKRKRVILFGNREGKTGF-FPMPEEWKPGINVEEILKD 247


>gi|240142441|ref|YP_002966951.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
           AM1]
 gi|240012385|gb|ACS43610.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 463

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           M A  +GVPQ R+R +++ +     VE  FP P    
Sbjct: 168 MNAVHYGVPQMRDRAFLLAYRQDLGVEPVFPEPTRAH 204


>gi|325962428|ref|YP_004240334.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468515|gb|ADX72200.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
          Length = 454

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A  +G PQ R RL II     
Sbjct: 175 VNAVHYGAPQHRPRLLIIALRRD 197


>gi|239918514|ref|YP_002958072.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|281415284|ref|ZP_06247026.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|239839721|gb|ACS31518.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
          Length = 315

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 1   MKACDFGVPQRRERLYIIDF 20
           + +  FGVPQ R R++I   
Sbjct: 157 LDSRHFGVPQSRTRVFICGV 176


>gi|238786362|ref|ZP_04630295.1| Methylase [Yersinia bercovieri ATCC 43970]
 gi|238712733|gb|EEQ04812.1| Methylase [Yersinia bercovieri ATCC 43970]
          Length = 466

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 21/109 (19%)

Query: 1   MKACDFGVPQRRERLYIID----------FLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
           + + D+G  + R+R+ +I           + +  + F           L DI E   DD 
Sbjct: 283 IDSRDYGSIEERKRMLVIGVSVGLTNVVSYFDDEIAF---YKKECIQTLNDIFEPIADDH 339

Query: 51  STISNKLWE---GHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYK 96
                  W+       ++  +  AGKGF   L   ++    T+   Y+K
Sbjct: 340 -----TAWKEYSYLADKEIRDLKAGKGFKRQLLTGDNNKCGTIGRGYHK 383


>gi|121712592|ref|XP_001273907.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119402060|gb|EAW12481.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 398

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 6  FGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKL 57
          FG   +R+R+ ++       +F F   L ++ R  DIL    D K T+ +K 
Sbjct: 45 FG---KRDRILLVG----EGDFSFARSLAVQYRCRDILATCYDSKETLWDKY 89


>gi|327356617|gb|EGE85474.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis ATCC
           18188]
          Length = 661

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           ++  D+GVPQ R+RL I+          FP P    P
Sbjct: 468 LRCQDYGVPQSRQRLVILASGPGEPLPPFPKPTHGPP 504


>gi|239614647|gb|EEQ91634.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis ER-3]
          Length = 661

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           ++  D+GVPQ R+RL I+          FP P    P
Sbjct: 468 LRCQDYGVPQSRQRLVILASGPGEPLPPFPKPTHGPP 504


>gi|261196301|ref|XP_002624554.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis
           SLH14081]
 gi|239587687|gb|EEQ70330.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis
           SLH14081]
          Length = 661

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           ++  D+GVPQ R+RL I+          FP P    P
Sbjct: 468 LRCQDYGVPQSRQRLVILASGPGEPLPPFPKPTHGPP 504


>gi|167763801|ref|ZP_02435928.1| hypothetical protein BACSTE_02181 [Bacteroides stercoris ATCC
           43183]
 gi|167697917|gb|EDS14496.1| hypothetical protein BACSTE_02181 [Bacteroides stercoris ATCC
           43183]
          Length = 357

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A   GVPQ+RER++ I   + 
Sbjct: 181 LDASKMGVPQKRERVFFICIRHD 203


>gi|330830237|ref|YP_004393189.1| Modification methylase [Aeromonas veronii B565]
 gi|328805373|gb|AEB50572.1| Modification methylase [Aeromonas veronii B565]
          Length = 433

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           +K+ ++G+PQ R R+ ++   +  +  + P     +P
Sbjct: 151 IKSEEYGIPQARHRVILLGIRDDRILTELPKLSQEEP 187


>gi|296814510|ref|XP_002847592.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
 gi|238840617|gb|EEQ30279.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
          Length = 586

 Score = 34.5 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           +   D+GVPQ R+RL II 
Sbjct: 425 VNCKDYGVPQSRKRLVIIA 443


>gi|330997448|ref|ZP_08321299.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329570822|gb|EGG52538.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 417

 Score = 34.1 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 4   CDFGVPQRRERLYIID 19
            D+G+PQ R+R+ I+ 
Sbjct: 190 ADYGIPQHRKRVIILG 205


>gi|237720893|ref|ZP_04551374.1| DNA-cytosine methyltransferase [Bacteroides sp. 2_2_4]
 gi|229449728|gb|EEO55519.1| DNA-cytosine methyltransferase [Bacteroides sp. 2_2_4]
          Length = 370

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A   GVPQ+RER++ I   + 
Sbjct: 194 LDASKMGVPQKRERVFFICIRHD 216


>gi|317051620|ref|YP_004112736.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
 gi|316946704|gb|ADU66180.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
          Length = 306

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 4   CDFGVPQRRERLYIIDFLNPSV-EFKFPTP 32
            D GVPQ R RL+++   +      KFP+ 
Sbjct: 146 ADLGVPQNRIRLFLVCTRSRVPLHLKFPSK 175


>gi|242217704|ref|XP_002474649.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726179|gb|EED80137.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1157

 Score = 34.1 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
           ++A  +G PQ R R ++I   +      FP P    P L D L+    +K
Sbjct: 867 LQAAHYGTPQSRIRFFLIAARSGHPLPAFPQPTHDFP-LKDSLKLEFTNK 915


>gi|331090172|ref|ZP_08339060.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402118|gb|EGG81690.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 681

 Score = 34.1 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 2   KACDFGVPQRRERLYIID 19
            A  +GVPQRR+R+Y++ 
Sbjct: 177 DAQYWGVPQRRKRIYLVA 194


>gi|284046510|ref|YP_003396850.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
 gi|283950731|gb|ADB53475.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
          Length = 424

 Score = 34.1 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A DFG PQRR RL  I     
Sbjct: 158 LDAGDFGTPQRRPRLVFIGVRTD 180


>gi|294637303|ref|ZP_06715601.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291089511|gb|EFE22072.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 722

 Score = 34.1 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 1   MKACDFGVPQRRERLYII-----DFLNPSVEFKFPTPLGIKPRLGD 41
           + A  FGV QRR+R++++      F   +V F+  +     P   +
Sbjct: 174 LDAQFFGVAQRRKRVFVVASARKGFDPTAVLFELESVRRDTPPSRE 219


>gi|238760580|ref|ZP_04621711.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
 gi|238701199|gb|EEP93785.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
          Length = 304

 Score = 34.1 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 4   CDFGVPQRRERLYIIDFLNPSV-EFKFPTPLGIK 36
            D GVPQ R R++II   +        P    + 
Sbjct: 146 ADLGVPQNRVRMFIICTRSKKPLHLTLPKFSHVP 179


>gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score = 34.1 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 14   RLYIIDFLNPSVEFKF-PTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKE 66
            R+  +     + EF F    +   P L DI+    DD+    +++ + H +R  
Sbjct: 1166 RIIHVGNRKLAYEFGFTDEDIDTHPALADIIHP--DDR----DRIIDYHVRRMA 1213


>gi|218847945|ref|YP_002454784.1| type II DNA-methyltransferase, putative [Bacillus cereus G9842]
 gi|218546076|gb|ACK98469.1| type II DNA-methyltransferase, putative [Bacillus cereus G9842]
          Length = 463

 Score = 34.1 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 22/104 (21%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLG--IKPRLGDILEEHIDDKSTISNKLW 58
           A D+G   RR R Y + F       +F+FP+P     +P+L   L+         ++  W
Sbjct: 263 AYDYGSIARRNRTYALAFRTKEAFLDFQFPSPPRTIKRPKLKVFLDGKD------TDHEW 316

Query: 59  EGHQKRKE--------NNKIAGKGFGYGLFFENSATTNTLSARY 94
           +  +  K+         N+   K F       ++     + +RY
Sbjct: 317 KDFKAWKKSFESRDAFKNRSLEKSF----VTPDAKEIQCILSRY 356


>gi|254413040|ref|ZP_05026812.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180204|gb|EDX75196.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 355

 Score = 34.1 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MKACDFGVPQRRERLYIIDFL-NPSVEFKF 29
           + A  + VPQ R+R+  I +  + +  FKF
Sbjct: 151 LNARHYNVPQDRKRVIFIGYHIDLNKCFKF 180


>gi|157112484|ref|XP_001657555.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
 gi|108878059|gb|EAT42284.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
          Length = 344

 Score = 34.1 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 5   DFGVPQRRERLYIID----FLNPSVE-FKFP--TPLGIKPRLGDILEEHIDD--KSTISN 55
           DFGVP  R R Y +     F NPS E    P    +G   R+ D++E   +   +  + +
Sbjct: 163 DFGVPNTRHRYYCVAKRTEFRNPSDEIVSKPTLQHVGTAKRICDLVEPESEKLNRYLLKD 222

Query: 56  KLW 58
            L 
Sbjct: 223 DLL 225


>gi|251788110|ref|YP_003002831.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
 gi|247536731|gb|ACT05352.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
          Length = 490

 Score = 34.1 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVE 26
           + A  FGV QRR+R++++      ++
Sbjct: 183 LDAQYFGVAQRRKRVFLVASGRDDID 208


>gi|237710586|ref|ZP_04541067.1| DNA-cytosine methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455308|gb|EEO61029.1| DNA-cytosine methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 366

 Score = 34.1 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A   GVPQ+RER++ I   + 
Sbjct: 192 LDASKMGVPQKRERVFFICIRHD 214


>gi|282880843|ref|ZP_06289537.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281305284|gb|EFA97350.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 374

 Score = 34.1 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGI-KPRLGDILEEHIDDKSTISN 55
           KA ++GVPQ+R R+ I+       +F     L + +  L   L+   + + TI +
Sbjct: 177 KAEEYGVPQQRRRVIILG---TKFDFDLDRELKLMRESLPTELQSVFNRRETIRD 228


>gi|18976421|ref|NP_577778.1| cytosine-specific DNA-methyltransferase [Pyrococcus furiosus DSM
           3638]
 gi|18891953|gb|AAL80173.1| site-specific DNA-methyltransferase (cytosine-specific) [Pyrococcus
           furiosus DSM 3638]
          Length = 301

 Score = 34.1 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A D+GVPQ R R++I
Sbjct: 146 LNALDYGVPQIRRRVFI 162


>gi|319654791|ref|ZP_08008867.1| hypothetical protein HMPREF1013_05489 [Bacillus sp. 2_A_57_CT2]
 gi|317393509|gb|EFV74271.1| hypothetical protein HMPREF1013_05489 [Bacillus sp. 2_A_57_CT2]
          Length = 325

 Score = 34.1 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPS--VEFKFP-TPLGIKPRLGDILE 44
           ++A DFG    R+R Y + F +    + F FP  P   + +L D L+
Sbjct: 126 LEAWDFGSLATRKRTYAVAFKDEKRFLSFDFPAAPKLRRKKLKDFLD 172


>gi|300775991|ref|ZP_07085850.1| possible DNA (cytosine-5-)-methyltransferase [Chryseobacterium
           gleum ATCC 35910]
 gi|300505124|gb|EFK36263.1| possible DNA (cytosine-5-)-methyltransferase [Chryseobacterium
           gleum ATCC 35910]
          Length = 415

 Score = 34.1 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 5   DFGVPQRRERLYIIDFLNPSVE 26
           D+GVPQ+R R  +I   N  V 
Sbjct: 173 DYGVPQKRTRFILIGVRNDIVN 194


>gi|167630968|ref|YP_001681467.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
 gi|167593708|gb|ABZ85456.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum Ice1]
          Length = 667

 Score = 34.1 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FGV QRR+R+Y++ 
Sbjct: 177 VDAQYFGVAQRRKRIYLVA 195


>gi|294155572|ref|YP_003559956.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
 gi|291599876|gb|ADE19372.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
           crocodyli MP145]
          Length = 415

 Score = 34.1 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP 23
           + A D+ +PQ+R+R++I  +   
Sbjct: 169 LNAGDYSMPQKRKRVFIFAYRKD 191


>gi|293570787|ref|ZP_06681836.1| cytosine-specific methyltransferase NlaX [Enterococcus faecium
           E980]
 gi|291609140|gb|EFF38413.1| cytosine-specific methyltransferase NlaX [Enterococcus faecium
           E980]
          Length = 310

 Score = 34.1 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 2   KACDFGVPQRRERLYIIDFLNPSVEFK-FP 30
            + +F V Q RER++II  L  +   K FP
Sbjct: 99  NSKEF-VAQNRERVFIIGHLRGAGTKKIFP 127


>gi|295666203|ref|XP_002793652.1| C-5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb01]
 gi|226277946|gb|EEH33512.1| C-5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb01]
          Length = 653

 Score = 34.1 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLG 34
           +K  D+GVPQ R+RL I+          FP P  
Sbjct: 471 LKCQDYGVPQPRQRLVILGSGPGEPLPLFPKPTH 504


>gi|294664030|ref|ZP_06729438.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606199|gb|EFF49442.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 349

 Score = 34.1 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLG 40
           +   D+GVPQ RER  ++           P P   K   G
Sbjct: 164 INGADYGVPQIRERCIVMGIKGRDP--SPPLPTHSKSPDG 201


>gi|229148238|ref|ZP_04276541.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
 gi|228635250|gb|EEK91777.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
          Length = 180

 Score = 33.7 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 7   GVPQRRERLYIIDFLNPSV 25
           GVPQRR+R++I  +L  S 
Sbjct: 156 GVPQRRKRIFIAGYLRGSG 174


>gi|291521423|emb|CBK79716.1| DNA-methyltransferase (dcm) [Coprococcus catus GD/7]
          Length = 521

 Score = 33.7 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV---EFKFPTPLGIK-----PRLGDILEEHIDD 49
           + +  FGVPQ R R  +I   +  +   E + P   G +       +GD+ +  +D+
Sbjct: 310 INSLWFGVPQERRRFIMIGVRSDIIQEKEIEMPEGNGAEIVTVGQAIGDLRDYEVDE 366


>gi|309378924|emb|CBX22511.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 330

 Score = 33.7 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDD-KSTISNKL-W 58
           + A   GVPQ R R ++I  L     F       + P L D L E     +  + N L  
Sbjct: 142 LDASYCGVPQARTRFFLIGKLGEEHNF-------LTPTLTDRLAEKPMTVRDYLGNSLNL 194

Query: 59  EGHQKRKENNKIAGKGFGYGLFFENSATTN 88
           E + +   N    G    + +  E S T  
Sbjct: 195 EHYYRHPRNYNRRGI---FSI-DEPSPTIR 220


>gi|294673411|ref|YP_003574027.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
           23]
 gi|294473101|gb|ADE82490.1| DNA methylase, C-5 cytosine-specific family [Prevotella ruminicola
           23]
          Length = 448

 Score = 33.7 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 21/94 (22%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKS-TISNKL-- 57
           + A   G PQRR+R  +I  L     F           + +ILE    DK  T+++    
Sbjct: 142 LNASRCGAPQRRKRFIMIGHLGEEDGF-----------MSNILELRQSDKEMTVADYFGS 190

Query: 58  ---WEGHQKRKENNKIAGKGFGYGLFFENSATTN 88
               + + +   +    G    +    E S T  
Sbjct: 191 QLDIQYYYRHPRSYARRGI---FS-VNEPSPTIR 220


>gi|299756527|ref|XP_001829400.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
 gi|298411717|gb|EAU92360.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
          Length = 1235

 Score = 33.7 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKP 37
           ++A  +G PQ RER  ++  L  +   + P P    P
Sbjct: 943 LQAGHYGTPQGRERFILVAALPGTQLPELPQPTHAFP 979


>gi|71361889|gb|AAZ30053.1| C5-cytosine methyltransferase [Halorubrum saccharovorum]
          Length = 408

 Score = 33.7 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 1   MKACDFGVPQRRER-LYIIDFLNPSVEFKFPTPLGIK 36
           + A ++GVPQ+R R + +  +     + + P P   +
Sbjct: 194 VNAANYGVPQKRNRTIGMFVYGAEDSDIELPEPTHAE 230


>gi|325270514|ref|ZP_08137114.1| modification methylase HindV [Prevotella multiformis DSM 16608]
 gi|324987090|gb|EGC19073.1| modification methylase HindV [Prevotella multiformis DSM 16608]
          Length = 320

 Score = 33.7 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF 27
           + A   GVPQRR+R +++  L  +  F
Sbjct: 142 LNAALCGVPQRRKRFFMVGRLGAADGF 168


>gi|254252470|ref|ZP_04945788.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124895079|gb|EAY68959.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 669

 Score = 33.7 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDIL 43
           ++ACD+G P  R+RL+II      +   +PTP    P+   +L
Sbjct: 208 LRACDYGAPTIRKRLFIIA-RRDGLPIVWPTPTHGDPKSAAVL 249


>gi|224539035|ref|ZP_03679574.1| hypothetical protein BACCELL_03935 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519363|gb|EEF88468.1| hypothetical protein BACCELL_03935 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 345

 Score = 33.7 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 1   MKACDFGVPQRRERLYIID 19
           +   ++GVPQ R+RL ++ 
Sbjct: 151 VNVKEYGVPQSRKRLVLVG 169


>gi|332711623|ref|ZP_08431554.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332349601|gb|EGJ29210.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 427

 Score = 33.7 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 1   MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDIL---EEHIDDKS 51
           ++A    V Q+RER+ II       +   FP        L ++L    + I  K 
Sbjct: 224 LRAQFLDVAQKRERVIIIAVRKDLDLNAIFPKEKDYTISLREVLKDCPKSIGAKY 278


>gi|210630924|ref|ZP_03296669.1| hypothetical protein COLSTE_00554 [Collinsella stercoris DSM 13279]
 gi|210160239|gb|EEA91210.1| hypothetical protein COLSTE_00554 [Collinsella stercoris DSM 13279]
          Length = 931

 Score = 33.7 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A D+G PQ+R R+YI
Sbjct: 687 VNAADYGFPQKRRRVYI 703


>gi|222151724|ref|YP_002560880.1| type II modification methyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|222120849|dbj|BAH18184.1| type II modification methyltransferase [Macrococcus caseolyticus
           JCSC5402]
          Length = 413

 Score = 33.7 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV 25
           + A D+G  QRR R++I  +   + 
Sbjct: 162 INAADYGNAQRRRRVFIFGYRRETN 186


>gi|239625135|ref|ZP_04668166.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519365|gb|EEQ59231.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
           1_7_47FAA]
          Length = 301

 Score = 33.7 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 1   MKACDFGVPQRRERLYIID 19
           + A  FG PQRR R YI+ 
Sbjct: 144 LDAKFFGTPQRRRRTYIVA 162


>gi|325857409|ref|ZP_08172464.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
           18C-A]
 gi|325483119|gb|EGC86099.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
           18C-A]
          Length = 320

 Score = 33.7 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEF 27
           + A   GVPQRR+R +++  L  +  F
Sbjct: 142 LNAALCGVPQRRKRFFMVGRLGAADGF 168


>gi|300723947|ref|YP_003713260.1| hypothetical protein XNC1_3088 [Xenorhabdus nematophila ATCC 19061]
 gi|297630477|emb|CBJ91142.1| Dmt (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 389

 Score = 33.7 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 1   MKACDFGVPQRRERLYIID-----FLNPSVEFKFPTPLGIKPR 38
           + A  FGV QRR R++++      F   +V F+ P  +   P 
Sbjct: 189 LDAQYFGVAQRRRRVFVVASARKNFCPATVLFE-PDSVHRHPE 230


>gi|332664528|ref|YP_004447316.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333342|gb|AEE50443.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 420

 Score = 33.7 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 3   ACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR----LGDIL 43
           A +FGV Q R+R+ I+ +   S +   P    IK +    + D+L
Sbjct: 195 AINFGVLQNRKRIIILGW-QESAKLNIPDLEDIKIKGNYLVADLL 238


>gi|330818898|ref|YP_004351115.1| C-5 cytosine-specific DNA methylase [Burkholderia gladioli BSR3]
 gi|327374440|gb|AEA65792.1| C-5 cytosine-specific DNA methylase [Burkholderia gladioli BSR3]
          Length = 828

 Score = 33.7 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR 38
           ++ACD G P  R+RL+I+      +  +FP      P 
Sbjct: 217 LRACDNGAPTIRKRLFIVG-RRDGLPVRFPEQEYGDPT 253


>gi|207111635|ref|ZP_03245797.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 42

 Score = 33.7 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 1  MKACDFGVPQRR 12
          + A D+GVPQ R
Sbjct: 31 LNAKDYGVPQNR 42


>gi|126433434|ref|YP_001069125.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
 gi|126233234|gb|ABN96634.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
          Length = 349

 Score = 33.7 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDI 42
           + A D+GV QRR R  +I   +       P P   K    D+
Sbjct: 130 LLAADYGVAQRRPRTIVIG--SRVGRVDLPPPTHSKTPTVDL 169


>gi|153932387|ref|YP_001385110.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937602|ref|YP_001388579.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
 gi|152928431|gb|ABS33931.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933516|gb|ABS39015.1| DNA-cytosine methyltransferase family protein [Clostridium
           botulinum A str. Hall]
          Length = 350

 Score = 33.3 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 6   FGVPQRRERLYIIDFLNP-SVEFKFPTPLGIK 36
           +G+PQ R R+ II        EFK P+P   K
Sbjct: 160 YGIPQARHRVIIIGIRKDLPFEFKVPSPEPYK 191


>gi|53712640|ref|YP_098632.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Bacteroides fragilis YCH46]
 gi|52215505|dbj|BAD48098.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Bacteroides fragilis YCH46]
          Length = 296

 Score = 33.3 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 8   VPQRRERLYIID--FLNPSVE-FKFPTPLGIKPRLG 40
           +PQ RER+Y++       + + F FP P G+  ++G
Sbjct: 151 LPQNRERMYLVGRAAKKCTADIFPFPAPGGMYGKVG 186


>gi|119026251|ref|YP_910096.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765835|dbj|BAF40014.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 424

 Score = 33.3 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 1   MKACDFGVPQRRERLYI 17
           + A D+G+PQRR R+YI
Sbjct: 180 VNAADYGMPQRRRRVYI 196


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.194    0.757 

Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,800,664,526
Number of Sequences: 14124377
Number of extensions: 136078889
Number of successful extensions: 266717
Number of sequences better than 10.0: 1920
Number of HSP's better than 10.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 583
Number of HSP's that attempted gapping in prelim test: 263427
Number of HSP's gapped (non-prelim): 2574
length of query: 101
length of database: 4,842,793,630
effective HSP length: 70
effective length of query: 31
effective length of database: 3,854,087,240
effective search space: 119476704440
effective search space used: 119476704440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 77 (33.7 bits)