RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI
[Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 56.8 bits (136), Expect = 1e-09
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 3 ACDFGVPQRRERLYIIDF---LNPSVEFKFPTPLGIKPRLGDILEEHIDD----KSTISN 55
+PQ RER+ ++ F LN +F P L + +D K ++
Sbjct: 269 DGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTP 328
Query: 56 KLWEGHQKRKENNKIAGKGFGYGLFFENS--ATTNTLSARYYKDGSEI 101
LW+ + + ++ G GFGYG+ + N+ + T TLSARYYKDG+EI
Sbjct: 329 VLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEI 376
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.4 bits (70), Expect = 0.044
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 42 ILEEHIDDKSTISNKLWEGHQ-----KRKENNKIAGKGF 75
++E+ +K+ + W Q K K NN+IA K F
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 31.5 bits (70), Expect = 0.046
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 1 MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
+ G+P R R ++I L + F+ P + ++ +I ++ D L +
Sbjct: 148 LSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVKMLKD 207
Query: 60 GHQKRKENNK 69
+ + N+
Sbjct: 208 FLEDDTDVNQ 217
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 31.1 bits (70), Expect = 0.063
Identities = 2/44 (4%), Positives = 6/44 (13%), Gaps = 1/44 (2%)
Query: 1 MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILE 44
+ G + + L +
Sbjct: 309 IPDVHGG-SLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQNKQ 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 29.5 bits (66), Expect = 0.16
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 11/38 (28%)
Query: 24 SVE--FKFPTP-LGIK--PRLGDILEEHIDDKSTISNK 56
S+E P+P L I + + ++++++ +N
Sbjct: 327 SLENNEGVPSPMLSISNLTQ--EQVQDYVNK----TNS 358
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.60A {Marinobacter aquaeolei}
Length = 126
Score = 26.3 bits (58), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 22 NPSVEFKFPTPLGIKPRLGDILEEHIDD 49
V + P+G PRLG + + + +
Sbjct: 92 EHGVTIRLAEPIGKNPRLGLAIRDVVKE 119
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 230
Score = 26.1 bits (57), Expect = 1.9
Identities = 1/26 (3%), Positives = 3/26 (11%)
Query: 7 GVPQRRERLYIIDFLNPSVEFKFPTP 32
G + +
Sbjct: 158 GGSLQNAVRVWSNIPAIRSRHWALVS 183
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha
sandwich; 2.50A {Anabaena SP}
Length = 253
Score = 24.9 bits (54), Expect = 4.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 31 TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRK 65
+P + LG + +K TI N+ ++ Q RK
Sbjct: 43 SPYHLPAELGYVEGRLEGEKLTIENRCYQTPQFRK 77
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.8 bits (53), Expect = 5.6
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 23/88 (26%)
Query: 32 PLGIKPRLGDILEEHIDDKSTISNKLWEGH--------QKRKENNKIA------------ 71
P P G I EHID KS ++++ + +K+K I
Sbjct: 571 PFAAIPEQG-IELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP 629
Query: 72 --GKGFGYGLFFENSATTNTLSARYYKD 97
G G G++ E+ + TL R++ +
Sbjct: 630 NHGTFGGDGMYSESKLSLETLFNRWHSE 657
>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus
SP}
Length = 214
Score = 24.1 bits (52), Expect = 7.1
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 57 LWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDG 98
W+ + I +GF ++ A ++ + +++G
Sbjct: 119 YWKANANEPME--IVAEGFSAVRRMKDKAGSDLKAVAQHRNG 158
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest
consortium for structural genomics, protein structure
initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus}
SCOP: c.92.1.3 PDB: 2dj5_A
Length = 156
Score = 24.2 bits (52), Expect = 7.4
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 23 PSVEFKFPTPLGIKPRLGDILEEHI 47
+ P+G + + +
Sbjct: 119 EGKKVVICEPIGEDYFVTYAILNSV 143
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthesis; HET: CL1
PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
Length = 740
Score = 24.0 bits (52), Expect = 9.1
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 31 TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
T GI + ++++ + + HQ
Sbjct: 292 TQFGIGHSIKEMMDAKDFFGTKVEGPFNMPHQ 323
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 295
Score = 23.7 bits (50), Expect = 9.9
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 1 MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDK 50
M R R + + P + + + K L + LE K
Sbjct: 162 MIDAKEVSAAHRARYFWGNL--PGMNRPLASTVNDKLELQECLEHGRIAK 209
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.139 0.419
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 925,395
Number of extensions: 39061
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 101
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 35
Effective length of database: 4,093,126
Effective search space: 143259410
Effective search space used: 143259410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)