HHsearch alignment for GI: 255764505 and conserved domain: COG1737
>COG1737 RpiR Transcriptional regulators [Transcription].
Probab=99.94 E-value=6.7e-25 Score=201.59 Aligned_cols=193 Identities=28% Similarity=0.318 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 67888655765533----------24579999999999999999999997200113669999999982799599993381
Q gi|255764505|r 5 FSHFKSVTRKGHSL----------MKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGK 74 (341)
Q Consensus 5 ~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~ 74 (341)
T Consensus 65 f~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~---~~l~~av~~L~~A~-rI~~~G~g~ 140 (281)
T COG1737 65 FSEFKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTLNLLDE---EALERAVELLAKAR-RIYFFGLGS 140 (281)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 89999999999763333100002456754689999999999999999853689---99999999997069-579996483
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 37999999999875088611012330232023012104707898368780788766666320456279984478895452
Q gi|255764505|r 75 SGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154 (341)
Q Consensus 75 S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~ 154 (341)
T Consensus 141 S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~ 220 (281)
T COG1737 141 SGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAK 220 (281)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 59999999999998199669966841799999838999889998489996899999999997799299983999993666
Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 1453376886155432475217899999999999999999850338788
Q gi|255764505|r 155 HADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 155 ~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
T Consensus 221 ~Ad~~L~~~~~~~~~~~~--~~~s~~a~l~l~d~L~~~~~~~~~~~~~~ 267 (281)
T COG1737 221 LADIVLLVPVAEESFFRS--PISSRIAQLALIDALITAVAQRRGEAALK 267 (281)
T ss_pred HCCEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 547788712676322255--60788999999999999999874688999