HHsearch alignment for GI: 255764505 and conserved domain: COG4109
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription].
Probab=99.52 E-value=1.4e-13 Score=119.16 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=144.0
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHCCCCEEEEEEECC-CCCCCCCHHHHHHHHHHH
Q ss_conf 2104707898368780788766666320456279984478--8954521453376886155-432475217899999999
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN--KSVVACHADIVLTLPKEPE-SCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~--~S~la~~ad~~l~~~~~~E-a~~~~~aPt~Stt~~l~~ 185 (341)
T Consensus 112 ~~~g~LlIV----GnR~~iq~lA--L~~~~A--VLvTGGF~~s~evi~lAne-~~lPvlstsYDT--------FTVAtmI 174 (432)
T COG4109 112 LDPGGLLIV----GNREDIQLLA--LENGNA--VLVTGGFDVSDEVIKLANE-KGLPVLSTSYDT--------FTVATMI 174 (432)
T ss_pred CCCCCEEEE----ECHHHHHHHH--HHCCCE--EEEECCCCCCHHHHHHHCC-CCCCEEEECCCC--------EEHHHHH
T ss_conf 078956999----4689999999--864985--9995798865889976401-488448704521--------3099999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEE
Q ss_conf 99999999985033878887531100111124333332104754305510023888898741046620000004323232
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG 265 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liG 265 (341)
T Consensus 175 N~Al~n~l-------------------IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvG 235 (432)
T COG4109 175 NKALSNQL-------------------IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVG 235 (432)
T ss_pred HHHHHHHH-------------------HHHHEEEHHHHCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEECCCCEEEE
T ss_conf 89987766-------------------64432558774464434323246450999999999719873413314426999
Q ss_pred EEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 4123403567617823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 266 IITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 266 IITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 236 vVt~rDv~----~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~ 304 (432)
T COG4109 236 VVTMRDVL----DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKS 304 (432)
T ss_pred EEEEHHHH----CCCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 99834644----4799861777742697554252268899888876455265688378618989889999999