HHsearch alignment for GI: 255764505 and conserved domain: PRK11337

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=99.94  E-value=2.4e-25  Score=204.82  Aligned_cols=172  Identities=18%  Similarity=0.209  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             45799999999999999999999972001136699999999827995999933813799999999987508861101233
Q gi|255764505|r   20 KNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA   99 (341)
Q Consensus        20 ~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~   99 (341)
T Consensus       101 ~d~~~~i~~k~~~~~~~~l~~t~~~ld~---~~i~~av~li~~A~-~I~i~G~G~S~~vA~~~~~kl~rlG~~~~~~~d~  176 (293)
T PRK11337        101 DDAPQDVVNKVFNISLQTIMEGQSIVNV---DEIHRAARFFYQAR-QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDA  176 (293)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf             8889999999999999999999972699---99999999998279-7089985726999999999999859804764777


Q ss_pred             CHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf             02320230121047078983687807887666663204562799844788954521453376886155432475217899
Q gi|255764505|r  100 EASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSA  179 (341)
Q Consensus       100 ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~St  179 (341)
T Consensus       177 ~~~~~~a~~l~~~Dv~i~iS~sG~t~e~i~~~~~Ak~~Ga~vI~IT~~~~SpLa~~aD~vL~~~~~e~--~~~~~~~~sr  254 (293)
T PRK11337        177 HIMMMSASLLQEGDVVLVVSHSGRTSDVKAAVELAKQNGAKIICITHSYHSPIAKLADYIICSPAPET--PLLGRNASAR  254 (293)
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCEEEECCCCCC--CCCCCCHHHH
T ss_conf             89999997189998899981899988999999999987994999769999846895899886488764--4344445999


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999850
Q gi|255764505|r  180 IMQLAIGDALAIALLESR  197 (341)
Q Consensus       180 t~~l~~~Dalav~l~~~~  197 (341)
T Consensus       255 ~~ql~viD~L~~~~~~~~  272 (293)
T PRK11337        255 ILQLTLLDAFFVSVAQLN  272 (293)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999978