HHsearch alignment for GI: 255764505 and conserved domain: TIGR00441
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=99.49 E-value=6.1e-13 Score=114.52 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=109.7
Q ss_pred HHHHH-HHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHH------HHCCCCCCCCCCCCHHH-----HC
Q ss_conf 99972-001136699999999827---99599993381379999999998------75088611012330232-----02
Q gi|255764505|r 41 LESSL-QGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTL------ASTGTPSFFVHAAEASH-----GD 105 (341)
Q Consensus 41 l~~~l-~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl------~s~G~~a~~~~~~ea~H-----gd 105 (341)
T Consensus 12 l~~~~~De~~~~Ai~~aa~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR~glPAIAL~-tD~S~Ltai~ND 90 (186)
T TIGR00441 12 LEKSLKDEALIEAIQRAALLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLERPGLPAIALN-TDISILTAIAND 90 (186)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHCCCH
T ss_conf 9998730450889999999999999808908985685043358889998716400026776467776-223532320011
Q ss_pred CCE----------E-ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC---CCEEEEEEECCCCCC
Q ss_conf 301----------2-10470789836878078876666632045627998447889545214---533768861554324
Q gi|255764505|r 106 LGM----------I-TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHA---DIVLTLPKEPESCPH 171 (341)
Q Consensus 106 lg~----------i-~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~a---d~~l~~~~~~Ea~~~ 171 (341)
T Consensus 91 ygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l~VP~~~~t~RI 170 (186)
T TIGR00441 91 YGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVELRVPSKRDTARI 170 (186)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf 02567877776632889868887424767088999999884579669997217863113357888605676788758403
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 75217899999999999999
Q gi|255764505|r 172 GLAPTTSAIMQLAIGDALAI 191 (341)
Q Consensus 172 ~~aPt~Stt~~l~~~Dalav 191 (341)
T Consensus 171 ------QE-~H~~~~H~lc~ 183 (186)
T TIGR00441 171 ------QE-IHLLVIHILCE 183 (186)
T ss_pred ------HH-HHHHHHHHHHH
T ss_conf ------23-48899989864