HHsearch alignment for GI: 255764505 and conserved domain: TIGR03520
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.43 E-value=9.8e-13 Score=113.03 Aligned_cols=140 Identities=16% Similarity=0.291 Sum_probs=114.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCH
Q ss_conf 9850338788875311001111243333321047543055100238888987410466200000043-232324123403
Q gi|255764505|r 194 LESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDI 272 (341)
Q Consensus 194 ~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDl 272 (341)
T Consensus 169 ~~~~g~~~eE~~~i~--~vl~l~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDl 246 (408)
T TIGR03520 169 TDEEDTTKEEQKILQ--GIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDL 246 (408)
T ss_pred HHCCCCCHHHHHHHH--HHHCCCCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHH
T ss_conf 403487789999999--982759989034235457958840644389999999857987222665898761799779899
Q ss_pred HHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 567617823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 273 FRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 273 rR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 247 l~~~~~--~~~~~~~~~-r~~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEe 309 (408)
T TIGR03520 247 LPHLNK--KNFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred HHHHHC--CCCCHHHHH-HHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 878736--999889986-321489997788999999986387489999899987899888998999