HHsearch alignment for GI: 255764505 and conserved domain: TIGR03520
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.29 E-value=0.00063 Score=48.94 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCC------CCHHHHCCCC
Q ss_conf 3333210475430551002388889874104662000000432323241234035676178233------7098834889
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNT------LSVEDVMIKN 292 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~------~~v~~iMt~~ 292 (341)
T Consensus 256 ~~~~~~r~---~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEeivGei~DE~d~~~~~~~-~~~~~ 331 (408)
T TIGR03520 256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYS-KIDDN 331 (408)
T ss_pred CHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEE-ECCCC
T ss_conf 88998632---148999778899999998638748999989998789988899899995888686776655508-73798
Q ss_pred CEEECCCCCHHHHHHHHH
Q ss_conf 789779987899999999
Q gi|255764505|r 293 PKVILEDTLLTVAMQLLR 310 (341)
Q Consensus 293 p~~I~~d~~i~eAl~lM~ 310 (341)
T Consensus 332 ~~~v~G~~~l~dl~~~l~ 349 (408)
T TIGR03520 332 NYVFEGKTSLKDFYKILK 349 (408)
T ss_pred EEEEEECCCHHHHHHHHC
T ss_conf 699980269999999858