HHsearch alignment for GI: 255764505 and conserved domain: cd04600
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.81 E-value=5.3e-19 Score=158.68 Aligned_cols=111 Identities=26% Similarity=0.351 Sum_probs=101.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC------------CCCCCCHHHHCCCCCEE
Q ss_conf 543055100238888987410466200000043232324123403567617------------82337098834889789
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK------------DLNTLSVEDVMIKNPKV 295 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~------------~~~~~~v~~iMt~~p~~ 295 (341)
T Consensus 2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~~~ 81 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCEE
T ss_conf 89699899397999999999729978999956980888856999998775046531012221055788989957799869
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 7799878999999996799589998069848999858889743
Q gi|255764505|r 296 ILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 296 I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A 124 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred ECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 9898979999999997793499999579989999978997469