HHsearch alignment for GI: 255764505 and conserved domain: cd04600
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=1e-07 Score=76.54 Aligned_cols=56 Identities=27% Similarity=0.499 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
T Consensus 69 ~~v~~iM~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A 124 (124)
T cd04600 69 ETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 898995779--98699898979999999997793499999579989999978997469