HHsearch alignment for GI: 255764505 and conserved domain: cd04604

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.90  E-value=5e-23  Score=187.95  Aligned_cols=112  Identities=45%  Similarity=0.690  Sum_probs=106.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf             75430551002388889874104662000000432323241234035676178--2337098834889789779987899
Q gi|255764505|r  227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTV  304 (341)
Q Consensus       227 ~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~e  304 (341)
T Consensus         1 ~~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~   80 (114)
T cd04604           1 GDALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             CCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCHHH
T ss_conf             99477889949399999999976997899997999399999899999998716664567974743567589938988699


Q ss_pred             HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf             9999996799589998069848999858889743
Q gi|255764505|r  305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        81 a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA  114 (114)
T cd04604          81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLRA  114 (114)
T ss_pred             HHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             9999987795799999899989999988995469