HHsearch alignment for GI: 255764505 and conserved domain: cd04604
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.90 E-value=5e-23 Score=187.95 Aligned_cols=112 Identities=45% Similarity=0.690 Sum_probs=106.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 75430551002388889874104662000000432323241234035676178--2337098834889789779987899
Q gi|255764505|r 227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 227 ~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
T Consensus 1 ~~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~ 80 (114)
T cd04604 1 GDALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCHHH
T ss_conf 99477889949399999999976997899997999399999899999998716664567974743567589938988699
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 81 a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA 114 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9999987795799999899989999988995469