HHsearch alignment for GI: 255764505 and conserved domain: cd04606
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=9.9e-16 Score=134.87 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=92.6
Q ss_pred EEEHHHHHHHHHHHHCCC-----CCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 510023888898741046-----620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 233 VKIGCPLIDAITILSEKR-----FGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 233 V~~~~si~eal~~m~~~~-----~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
T Consensus 2 ~~~~~TV~eai~~lr~~~~~~~~~~~i~Vvd~~~~l~G~vt~~dll~~----~~~~~v~~iM~~~~~~v~~~~~~~~a~~ 77 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----DPDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEHHHHHHC----CCCCCHHHHHCCCEEECCCCCCHHHHHH
T ss_conf 699889999999998518885617799999799979999986772241----8887166630021363379998999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 78 ~m~~~~~~~lPVVd~~~~lvGiIt~~Di~~~ 108 (109)
T cd04606 78 LFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 9998527604689889979999996896844