HHsearch alignment for GI: 255764505 and conserved domain: cd04612

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.76  E-value=2.8e-18  Score=153.35  Aligned_cols=109  Identities=31%  Similarity=0.403  Sum_probs=101.2

Q ss_pred             CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC-CCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf             430551002388889874104662000000432323241234035676178-2337098834889789779987899999
Q gi|255764505|r  229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD-LNTLSVEDVMIKNPKVILEDTLLTVAMQ  307 (341)
Q Consensus       229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-~~~~~v~~iMt~~p~~I~~d~~i~eAl~  307 (341)
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~~~~lpVvd-~~~l~Givt~~di~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~   80 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD-DGRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK   80 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             849999929599999999971994899999-9999999989999987751477775699997079605299997999999


Q ss_pred             HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf             9996799589998069848999858889743
Q gi|255764505|r  308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        81 ~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA  111 (111)
T cd04612          81 RMAERDIGRLPVVDDSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             HHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             9997698199999689989999986886349