HHsearch alignment for GI: 255764505 and conserved domain: cd04612
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.28 E-value=4.8e-07 Score=71.65 Aligned_cols=56 Identities=30% Similarity=0.471 Sum_probs=51.6
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
T Consensus 56 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA 111 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred CEEEEEECC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 569999707--96052999979999999997698199999689989999986886349