HHsearch alignment for GI: 255764505 and conserved domain: cd04617
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.86 E-value=2.2e-21 Score=175.94 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=98.4
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH--CCCCCCCHHHHCCCCC--EEECCCCCHHHHHH
Q ss_conf 5510023888898741046620000004323232412340356761--7823370988348897--89779987899999
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH--KDLNTLSVEDVMIKNP--KVILEDTLLTVAMQ 307 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~--~~~~~~~v~~iMt~~p--~~I~~d~~i~eAl~ 307 (341)
T Consensus 5 tv~~~~si~eA~~~M~~~~ig~l~VVD~~~~LvGIiT~rDl~r~~~~~~~~~~~pV~~iMT~~P~vvt~~pd~~v~~A~~ 84 (118)
T cd04617 5 VVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAK 84 (118)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 98996999999999998399879998499959999878999999974898467829998577997199789993999999
Q ss_pred HHHHCCCCEEEEEECCC---EEEEEEEHHHHHH
Q ss_conf 99967995899980698---4899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQ---KAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~---~lvGiIt~~DLlk 337 (341)
T Consensus 85 ~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~k 117 (118)
T cd04617 85 KLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHCCCCEECEEECCCCCEEEEEEEECCCEEC
T ss_conf 999829998567943997408999997751504