HHsearch alignment for GI: 255764505 and conserved domain: cd04627
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=1e-16 Score=142.01 Aligned_cols=105 Identities=25% Similarity=0.294 Sum_probs=93.6
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCEEEECCC-CCEEEEEEECCCHHHHHHCCCC-----------CCCHHHHCCCCCEEECC
Q ss_conf 05510023888898741046620000004-3232324123403567617823-----------37098834889789779
Q gi|255764505|r 231 PLVKIGCPLIDAITILSEKRFGCVAVVDE-GQKLKGIITEGDIFRNFHKDLN-----------TLSVEDVMIKNPKVILE 298 (341)
Q Consensus 231 p~V~~~~si~eal~~m~~~~~g~v~Vvd~-~~~liGIITdgDlrR~l~~~~~-----------~~~v~~iMt~~p~~I~~ 298 (341)
T Consensus 4 i~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~viti~~ 83 (123)
T cd04627 4 IPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISING 83 (123)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEEECC
T ss_conf 48489892999999997499777999958999499999979999999863765661445411200233237677179899
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHH
Q ss_conf 9878999999996799589998069848999858889
Q gi|255764505|r 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDL 335 (341)
Q Consensus 299 d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DL 335 (341)
T Consensus 84 d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dl 120 (123)
T cd04627 84 DQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHE
T ss_conf 9959999999998098878698599969999892542