HHsearch alignment for GI: 255764505 and conserved domain: cd04636
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=3.4e-19 Score=160.11 Aligned_cols=109 Identities=33% Similarity=0.445 Sum_probs=100.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC----------------------CCCCCHH
Q ss_conf 430551002388889874104662000000432323241234035676178----------------------2337098
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD----------------------LNTLSVE 286 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~----------------------~~~~~v~ 286 (341)
T Consensus 2 dvvtv~~~~tl~ea~~~m~~~~~~~lpVvd~~~~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHH
T ss_conf 98796891979999999997299789999599939999888999999862676200000000000023331020389999
Q ss_pred HHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 8348897897799878999999996799589998069848999858889743
Q gi|255764505|r 287 DVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 287 ~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 82 diMt~~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGiIt~~Dilra 132 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKLVGIISRGDIIRS 132 (132)
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 96789987999979499999999962987899998-9999999996882349