HHsearch alignment for GI: 255764505 and conserved domain: cd04643
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=4.5e-07 Score=71.81 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
T Consensus 63 ~~V~~iM~~--~~~tv~~~~~i~~~~~~m~~~~~--lpVVD~~~~lvGIITr~DilkA 116 (116)
T cd04643 63 LKVIDVMNT--DVPVIIDDADIEEILHLLIDQPF--LPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCE--EEEEECCCEEEEEEEHHHHHCC
T ss_conf 687795156--98899079999999999987898--9999459999999992795579