HHsearch alignment for GI: 255764505 and conserved domain: cd04802
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.76 E-value=1.2e-17 Score=148.88 Aligned_cols=107 Identities=31% Similarity=0.435 Sum_probs=97.0
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH-C--CCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761-7--823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH-K--DLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~-~--~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
T Consensus 2 ~vvti~~~~tl~~a~~~m~~~~i~~l~V~d-~~~~vGivt~~Di~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~l~~a 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD-NEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCHHHHH
T ss_conf 978968919899999999974998799998-9999999982187888875479812389999723485599479869999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99999679958999806984899985888974
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 81 ~~~m~~~~~~~lpVvd~-~~lvGiIt~~Dil~ 111 (112)
T cd04802 81 AKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHCCCEEEEEEC-CEEEEEEECHHHCC
T ss_conf 99878719858999989-99999998067105