RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter asiaticus str. psy62] (341 letters) >gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional. Length = 326 Score = 277 bits (711), Expect = 2e-75 Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 8/311 (2%) Query: 34 EKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPS 93 E+ GL+ L+ + + F A EK+ KG+VV+ G+GKSGHIG K+A+T ASTGTPS Sbjct: 21 EREGLAELDQYINQD----FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPS 76 Query: 94 FFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVA 153 FFVH EA+HGDLGM+T D++I +S SG S E+ A++ +R +PLI IT +S +A Sbjct: 77 FFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMA 136 Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKL 213 ADI L + E+CP GLAPT+S L +GDALA+ALL++R F+ DF + HPGG L Sbjct: 137 RAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGAL 196 Query: 214 G-TLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272 G L + SD+MH+GD IP V L DA+ ++ K G + D+ K++GI T+GD+ Sbjct: 197 GRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDL 256 Query: 273 FRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330 R F DL S+ DVM + L A+ L++ +I+ ++V D +G++ Sbjct: 257 RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVL 315 Query: 331 HFLDLLRFGII 341 H DLLR G++ Sbjct: 316 HMHDLLRAGVV 326 >gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. Length = 268 Score = 271 bits (695), Expect = 1e-73 Identities = 122/269 (45%), Positives = 167/269 (62%), Gaps = 3/269 (1%) Query: 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSS 124 G++VI GIGKSG IG K+ +T ASTGTPSFF+H EA HGDLGM+ +D+++++S+SG S Sbjct: 1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES 60 Query: 125 DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLA 184 EL ++ + +R S +IA T S +A AD VL + E E+CP LAPTTS + LA Sbjct: 61 LELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLA 120 Query: 185 IGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIPLVKIGCPLIDAI 243 +GDALA+AL+ +RNFS+ DF HPGG LG L V D+M + D +PL+ DA+ Sbjct: 121 LGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDLMQTTD-LPLIAPTTSFKDAL 179 Query: 244 TILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-DLNTLSVEDVMIKNPKVILEDTLL 302 +SEKR G V DE +L G+ T+GD+ R V D M PK D LL Sbjct: 180 LEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239 Query: 303 TVAMQLLRQHNISVLMVVDDCQKAIGIVH 331 A++ L + I+ L+VVDD K +G++H Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVLH 268 >gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional. Length = 321 Score = 248 bits (636), Expect = 1e-66 Identities = 117/292 (40%), Positives = 171/292 (58%), Gaps = 4/292 (1%) Query: 53 FHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRD 112 F A I +G+VV++GIGKSGHIG K+A+TLASTGTP+FFVH AEA HGDLGMI Sbjct: 31 FVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESR 90 Query: 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172 D+++ +S+SG + EL I+ SI L+A+T + S + A VL + E E+CP Sbjct: 91 DVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMH 150 Query: 173 LAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIP 231 LAPT+S + L +GDALA+A++++R F+E DF HP G LG L +M D+IP Sbjct: 151 LAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIP 210 Query: 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLS--VEDVM 289 V + ++DA+ LS G VAV D Q+++G+ T+GD+ R L+ V + M Sbjct: 211 QVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-GALTTPVNEAM 269 Query: 290 IKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII 341 + + + A ++L + I+ VVD+ K G ++ D + GII Sbjct: 270 TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII 321 >gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed. Length = 486 Score = 59.4 bits (145), Expect = 1e-09 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKV-I 296 L +A+ +++ V VVDE KL GIIT D+ F DL+ V +VM K V + Sbjct: 105 TLAEALALMARYGISGVPVVDENGKLVGIITNRDV--RFETDLSQP-VSEVMTKERLVTV 161 Query: 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330 E T L A++LL +H I L VVDD + G++ Sbjct: 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 Score = 39.0 bits (92), Expect = 0.002 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-----FRN 275 S+VM + V G L +A+ +L E R + VVD+ +LKG+IT DI F N Sbjct: 150 SEVMTKERLV-TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPN 208 Query: 276 FHKD 279 KD Sbjct: 209 ACKD 212 Score = 38.6 bits (91), Expect = 0.002 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 E ++ +P + DT L A+ L+ ++ IS + VVD+ K +GI+ D +RF Sbjct: 90 ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD-VRF 141 >gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. Length = 450 Score = 57.0 bits (138), Expect = 8e-09 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 9/105 (8%) Query: 238 PLIDAITILSEKRFGCVAVVDEG---QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294 + D + ++ K + VV++G KL GIIT+ DI F KD V +VM + + Sbjct: 98 TVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI--RFVKDKGK-PVSEVMTRE-E 153 Query: 295 VIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 VI E L A+++L +H I L VVD + +G++ D+++ Sbjct: 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198 Score = 35.4 bits (82), Expect = 0.022 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 S+VM + + + V G L +A+ +L E R + VVD+ +L G+IT DI + Sbjct: 146 SEVM-TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199 Score = 31.5 bits (72), Expect = 0.33 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD---CQKAIGIV 330 E+ +I +P I +T + ++L+ + IS + VV+D K +GI+ Sbjct: 83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGII 130 >gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional. Length = 495 Score = 50.0 bits (120), Expect = 1e-06 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 8/105 (7%) Query: 238 PLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294 + D + I +K F + + +G+ KL GI+T DI +F KD +T V +VM K Sbjct: 114 TVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDI--DFVKDKSTP-VSEVMTPREK 170 Query: 295 VILEDTLLTV--AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 +++ +T +++ A ++LR+ L +V+D + + +V DL + Sbjct: 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK 215 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 49.1 bits (117), Expect = 2e-06 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 220 ASDVMHSGDSIPLVKI-GCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK 278 A + ++ P+ K A+ ++ ++R + VVD KL G++ I + K Sbjct: 241 AERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK 300 Query: 279 DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330 ++DV+I + + TLL ++ + + I V VVD+ Q+ +GIV Sbjct: 301 A---QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIKV-PVVDEDQRLVGIV 348 Score = 32.5 bits (74), Expect = 0.15 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGC-VAVVDEGQKLKGIITEGDIFR 274 DV+ D I V G L + + + + G V VVDE Q+L GI+T G + Sbjct: 305 QDVLI--DDIYTVDAGTLLRETVRKVLKA--GIKVPVVDEDQRLVGIVTRGSLVD 355 Score = 32.5 bits (74), Expect = 0.17 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%) Query: 282 TLSVEDVMIKNPKV---ILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330 E + + D A+QL+R + L VVD K +G+V Sbjct: 238 VFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVV 289 >gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. Length = 454 Score = 48.3 bits (115), Expect = 3e-06 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF--HKDLNTLSVEDVMIKNPKVILE 298 DAI IL E F + VV E K+ G +T ++ K +V VM K I E Sbjct: 356 DAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGE 415 Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 L+ + L ++ S +V ++ K IG+V +DLL F Sbjct: 416 GEKLSDLSKFLEKN--SSAIVTEE-GKPIGVVTKIDLLSF 452 Score = 33.6 bits (77), Expect = 0.076 Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 278 KDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 L +V+D+ + P + + A+++LR++ L VV + K +G V +LL Sbjct: 330 DVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLS 389 >gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR; Provisional. Length = 292 Score = 47.4 bits (113), Expect = 5e-06 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 108 MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE 167 ++ D+++V+S SG + ++ + A++ +I IT+ S +A AD V+ Sbjct: 184 LLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTA-QG 242 Query: 168 SCPHGLAPTTSA-IMQLAIGDALAIAL 193 S L +A I QL I DA +++ Sbjct: 243 S--PLLGENAAARIAQLNILDAFFVSV 267 >gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family transcriptional regulator; Provisional. Length = 638 Score = 44.5 bits (105), Expect = 4e-05 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%) Query: 45 LQGELSFQFHCAVEK-IKAIKG--RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA 101 L+ L+F+ VE+ I + R+ G+G S + G P+ Sbjct: 449 LREHLNFE---HVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTI------- 498 Query: 102 SHGDLGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154 ++GDL M + + D+I+ +S SG + EL +L A + +IAITS N + +A Sbjct: 499 AYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSN-TPLAK 557 Query: 155 HADIVLTL--PKEPESCPHGLAPTTSAIMQLAIGDALAIAL 193 A + L + ES S I+ L + D LA+ + Sbjct: 558 RATVALETDHIEMRES----QLSMISRILHLVMIDILAVGV 594 >gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional. Length = 546 Score = 44.4 bits (106), Expect = 4e-05 Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 282 TLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 V D+ I P + DT L A L+ ++N+ L VVD+ K +G+V DL R Sbjct: 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR 122 Score = 42.1 bits (100), Expect = 2e-04 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKV 295 L +A ++ E + VVDE KL G+++ D+ R + D LS ++N Sbjct: 86 SLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIR 145 Query: 296 ILEDTLLT 303 L+ +L Sbjct: 146 TLDGEVLV 153 Score = 32.5 bits (75), Expect = 0.16 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 220 ASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272 S +M + D + L D ++ + R+ VVDE K+ G+I+ + Sbjct: 248 VSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL 299 >gnl|CDD|128426 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 Score = 44.4 bits (106), Expect = 4e-05 Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277 L +A+ +L E + VVDE +L GI+T DI + Sbjct: 10 TLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKALA 49 Score = 40.2 bits (95), Expect = 7e-04 Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 + + DT L A++LLR+H I L VVD+ + +GIV D+++ Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 >gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity. Length = 291 Score = 44.1 bits (104), Expect = 6e-05 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 22/125 (17%) Query: 65 GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAAE-------ASHG 104 GR++ G G SG +G AS T G +HA E A Sbjct: 58 GRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGAN 117 Query: 105 DLGMI--TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTL 162 DL I T++D+++ ++ SG + + A L YAR I+I KS + ADI + Sbjct: 118 DLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 Query: 163 PKEPE 167 PE Sbjct: 178 IVGPE 182 >gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated. Length = 502 Score = 43.1 bits (102), Expect = 9e-05 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 24/169 (14%) Query: 175 PTTSAIMQLAIGDALAIALLESRNFS--------ENDFYVLHPGGKLGTLFVCASDVMHS 226 P SAIMQ D +AIAL S E++ ++ FV SD + Sbjct: 53 PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFV-VSDSNLT 111 Query: 227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTL 283 D+ L D + + + VAV ++G KL GI+T D +R L+T Sbjct: 112 PDN--------TLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRD-YRISRMSLDTK 162 Query: 284 SVEDVMIKNPKVIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330 V+D M K++ E T L A ++ H ++ L +VD + +V Sbjct: 163 -VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLV 210 >gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator; Provisional. Length = 278 Score = 42.8 bits (101), Expect = 1e-04 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Query: 31 IIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG 90 +I E +++ ++L + H V +++ + R+++TGIG SG + A L G Sbjct: 98 LIKEN--TAAMRATLDVNSEEKLHECVTMLRSAR-RIILTGIGASGLVAQNFAWKLMKIG 154 Query: 91 TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150 + A + ++ DDL++ +S+SG EL A R ++AIT + Sbjct: 155 INAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPN 214 Query: 151 VVACHADIVL-TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLE 195 + A L T+ +E + A +S Q + D L +AL++ Sbjct: 215 ALQQRASHCLYTIAEEQATRS---AAISSTHAQGMLTDLLFMALIQ 257 >gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. Length = 179 Score = 41.9 bits (99), Expect = 3e-04 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Query: 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM--ITRDDLIIVLSWSG 122 R+ + G G+SG +G A L G + V G+ I + DL+I +S SG Sbjct: 31 KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVV-------GETTTPSIKKGDLLIAISGSG 83 Query: 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP----KEPESCPHGLAPTTS 178 ++ L + A+ + AIT+ +S + AD+V+ +P K+ E + P S Sbjct: 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGS 143 Query: 179 AIMQ--LAIGDALAIALLESRNFSENDFYVLH 208 Q L DA+ + L++ + E + H Sbjct: 144 LFEQSLLLFLDAVILKLMKKKGLDEEEMKKRH 175 >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated. Length = 479 Score = 39.5 bits (93), Expect = 0.001 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298 DA+ +L ++ G V VVDE + G++TE D F V DVM + + Sbjct: 110 DALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRF------TQVRDVMSTDLVTLPA 163 Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340 T A LL + + VVD + +G++ LR I Sbjct: 164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 >gnl|CDD|183600 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase; Reviewed. Length = 296 Score = 39.7 bits (93), Expect = 0.001 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 25/137 (18%) Query: 56 AVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAA 99 AV+KI A K GR++ G G SG +G AS T G P A Sbjct: 47 AVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAV 106 Query: 100 EASHGDLGMI---------TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150 E + D + T DD+++ ++ SG + + L YA++ IA++ S Sbjct: 107 EGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDS 166 Query: 151 VVACHADIVLTLPKEPE 167 +A ADI ++ PE Sbjct: 167 PIAKIADIAISPVVGPE 183 >gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional. Length = 284 Score = 38.1 bits (89), Expect = 0.004 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPH 171 D+++++S +G + L + AR +IAITS S +A A + LTL PE Sbjct: 176 GDVVVLISHTGRTKSLVELAQLARENGATVIAITSAG-SPLAREATLALTLD-VPEDTDI 233 Query: 172 GLAPTTSAIMQLAIGDALA 190 + P S I QL + D LA Sbjct: 234 YM-PMVSRIAQLTVIDVLA 251 >gnl|CDD|162718 TIGR02128, G6PI_arch, bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea. Length = 308 Score = 36.6 bits (85), Expect = 0.008 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 57 VEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDD 113 +++I I +VI G+G SG I ++ S L + V + D + + Sbjct: 14 IDEILKIYDEIVICGMGGSG-IAGRIISILLLEKSFQGPVFVVK----DYRLPRFVDGKT 68 Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 L+I +S+SG+++E + + A++ +IAITS Sbjct: 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITS 101 >gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose isomerase; Validated. Length = 337 Score = 36.9 bits (86), Expect = 0.008 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%) Query: 40 SLESSLQGELSFQFHCAVE-KIKAIKGRVVITGIGKSGHIGSKLASTLASTGTP-SFFVH 97 + + L +E ++ I +VI+G+G SG IG L L FV+ Sbjct: 10 NWPEQFEEALEIAISLDLEEDLEKID-NIVISGMGGSG-IGGDLLRILLFDELKVPVFVN 67 Query: 98 AAEASHGDL--GMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 + L+I +S+SG+++E + + A + +IAITS Sbjct: 68 -----RDYTLPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS 113 >gnl|CDD|178531 PLN02945, PLN02945, nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase. Length = 236 Score = 35.4 bits (82), Expect = 0.019 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 209 PGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIIT 268 + + +C SD++ S S P V I TI + +G V + EGQ ++ +++ Sbjct: 126 SEESVRVMLLCGSDLLESF-STPGVWIP---DQVRTICRD--YGVVCIRREGQDVEKLVS 179 Query: 269 EGDIFRNFHKDLNTLSVEDV 288 + +I ++ N L V+D+ Sbjct: 180 QDEILNE-NRG-NILVVDDL 197 >gnl|CDD|180083 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed. Length = 299 Score = 33.2 bits (77), Expect = 0.093 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 25/138 (18%) Query: 55 CAVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-GTP------------SFFVHA 98 AV+ A++ GR++ G G SG +G AS T G P A Sbjct: 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKA 109 Query: 99 AEASHGD--LGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149 E + D LG +T D+++ ++ SG + + L YAR I I+ Sbjct: 110 VEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPG 169 Query: 150 SVVACHADIVLTLPKEPE 167 S ++ ADI + + PE Sbjct: 170 SPLSKEADIAIEVVVGPE 187 >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. Length = 475 Score = 32.6 bits (74), Expect = 0.14 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298 DA+ ++ ++ G V+ E + + G++T+ D+ F + V D+M + Sbjct: 109 DAMALIHKRAHGAAVVILEDRPV-GLVTDSDLLGVDRFTQ------VRDIMSTDLVTAPA 161 Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340 DT A LL V +VD GI+ LR I Sbjct: 162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 >gnl|CDD|181854 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional. Length = 304 Score = 32.6 bits (75), Expect = 0.14 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%) Query: 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180 SG+S AI A R+ I L+ +T + V+ V P TT A Sbjct: 195 SGTSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDP----VDTTGA- 249 Query: 181 MQLAIGDALAIALL 194 GDA LL Sbjct: 250 -----GDAFVAGLL 258 >gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase. Length = 505 Score = 32.3 bits (74), Expect = 0.18 Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 S+VM S D + G L +A +L + + G + +V+E +L ++T D+ R Sbjct: 166 SEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 >gnl|CDD|185379 PRK15482, PRK15482, transcriptional regulator MurR; Provisional. Length = 285 Score = 32.0 bits (72), Expect = 0.26 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%) Query: 67 VVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDDLIIVLSWSGS 123 + ITG+G S +G L+ L G + V +H + + + D+ I +S+SGS Sbjct: 138 IQITGLGGSALVGRDLSFKLMKIG---YRVACEADTHVQATVSQALKKGDVQIAISYSGS 194 Query: 124 SDELKAILYYARRFSIPLIAITSENKSVVACHADIVL-TLPKEPESCPHGLAPTTSAIMQ 182 E+ AR+ +IAITS S + A L T+ E E ++ T+ Q Sbjct: 195 KKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTA---Q 251 Query: 183 LAIGDALAIALLE 195 ++ D L + L++ Sbjct: 252 NSVTDLLFVGLVQ 264 >gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein. Length = 607 Score = 31.4 bits (72), Expect = 0.36 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPES 168 + +D L+I +S SG + + A L A+ + I + S + +D L PE Sbjct: 336 VDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEI 395 Query: 169 CPHGLAPTTSAIMQLAIGDALAIALLESRN 198 G+A T + QL + LA+ L ++R Sbjct: 396 ---GVASTKAFTTQLTVLYLLALKLAKARG 422 Score = 27.6 bits (62), Expect = 4.6 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 23/106 (21%) Query: 98 AAEASHGDLGMITRDDLIIVLSWSGSS--------DELKAILYYARRFSIPLIAITSENK 149 A E HG + +I ++ ++ S +E+KA R + +I E+ Sbjct: 498 AGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEVKA------RGA-RVIVFADEDD 550 Query: 150 SVVACHADIVLTLPKEPESCPHGLAPTTSAI-MQLAIGDALAIALL 194 + AD V+ LP+ LAP + +QL A IAL Sbjct: 551 EFLESVADDVIKLPE----VEELLAPIVYTVPLQLL---AYHIALA 589 >gnl|CDD|179226 PRK01115, PRK01115, DNA polymerase sliding clamp; Validated. Length = 247 Score = 30.6 bits (70), Expect = 0.69 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 106 LGMITRDDLIIVLSWSGSSDELKAILYYA--RRFSIPLIAITSEN 148 L + D + L ++LK R FS+PL+ ++SE Sbjct: 79 LKRAKKGDKLE-LELDEEENKLKITFGGEKTREFSLPLLDVSSEE 122 >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated. Length = 322 Score = 29.6 bits (67), Expect = 1.2 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Query: 61 KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFV-------HAAEASHGDLGMITRDD 113 + KG V+ITG SG +G A LA G + V AEA+ +LG I D Sbjct: 3 QDAKGTVIITG-ASSG-VGLYAAKALAKRG---WHVIMACRNLKKAEAAAQELG-IPPDS 56 Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172 I+ G D ++ + R PL A+ C+A + + L KEP P G Sbjct: 57 YTIIHIDLGDLDSVRRFVDDFRALGKPLDALV--------CNAAVYMPLLKEPLRSPQG 107 >gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional. Length = 246 Score = 29.5 bits (67), Expect = 1.2 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 34/118 (28%) Query: 109 ITRDDLIIVLSWSG---SSDELKAILYYARRFSIPLIAITS--ENKSVVACH-------- 155 I D++IV+S SG E+ A+ A+ +IA+TS + SV + H Sbjct: 104 IRPGDVLIVVSNSGRNPVPIEM-AL--EAKERGAKVIAVTSLAYSASVASRHSSGKRLAE 160 Query: 156 -ADIVL---------TLPKEPESCPHGLAPT----TSAIMQLAIGDALAIALLESRNF 199 AD+VL L P + P +AI+ A L R Sbjct: 161 VADVVLDNGAPKGDAVLEIPGLEAP--VGPVSTVVGAAILNAIF--AEVAERLVERGI 214 >gnl|CDD|179374 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein; Validated. Length = 652 Score = 29.6 bits (67), Expect = 1.2 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 54 HCAV--EKIKAIKG-RVVITGIGKSGHIG 79 +C EKI+A G + GIG++GHIG Sbjct: 145 YCRDYEEKIEAAGGIDFQLLGIGRTGHIG 173 >gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional. Length = 407 Score = 29.2 bits (66), Expect = 1.5 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 237 CPLIDAITILSEKRFGCVAVVDEGQKL 263 PL D + I + FGCV VVDE L Sbjct: 198 APLADIVDI--AEEFGCVLVVDESHSL 222 >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional. Length = 256 Score = 29.0 bits (65), Expect = 1.6 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 61 KAIKGRV-VITGIGKSGHIGSKLASTLASTGTPSFFVH 97 +K +V V+TG+ + IG+ + LA G FF + Sbjct: 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY 39 >gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. Length = 449 Score = 28.3 bits (63), Expect = 3.1 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 28/93 (30%) Query: 256 VVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLT-----VAMQ--- 307 V +E + LKG LS+ D+++ P+ IL + + V + Sbjct: 172 VTNESKHLKG----------------VLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQE 215 Query: 308 ----LLRQHNISVLMVVDDCQKAIGIVHFLDLL 336 L+++++ + VVD+ + +GIV D++ Sbjct: 216 EVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248 >gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed. Length = 352 Score = 27.7 bits (61), Expect = 4.7 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%) Query: 76 GHI--GSKLASTLASTGTP---SFFVHAAEASHGDLGMITRDDLI 115 GH+ + +T G P S+ V AAE SHG++ M++ ++++ Sbjct: 225 GHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEIL 269 >gnl|CDD|152352 pfam11917, DUF3435, Protein of unknown function (DUF3435). This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to pfam00589 suggesting it may be an integrase enzyme. Length = 414 Score = 27.8 bits (62), Expect = 4.7 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%) Query: 140 PLIAITSENKSVVA--CHADIVLTLPKEPESCPH 171 L TS + + DI LTL ++P+ Sbjct: 33 LLAGFTSNRPGALLSLRYKDIELTLIRDPDGGRP 66 >gnl|CDD|177742 PLN00133, PLN00133, class I-fumerate hydratase; Provisional. Length = 576 Score = 27.1 bits (60), Expect = 6.3 Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQ 182 CH V+ LP+ SCP G+ + SA Q Sbjct: 331 CHDVRVIRLPRHGASCPVGIGVSCSADRQ 359 >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional. Length = 382 Score = 27.2 bits (61), Expect = 7.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 120 WSGSSDELKAILYYARRFSIPLIA 143 W+ S D+L+AIL + RR + ++A Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVA 196 >gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed. Length = 604 Score = 26.5 bits (60), Expect = 9.2 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 22/169 (13%) Query: 40 SLESSLQGELSFQFHC--AVEKIKAIKGRVVITGIGKS---GHIGSKLASTLASTGTPSF 94 ++ +L+G L A E +K I R+ I G S G + L +LA Sbjct: 264 AIRDTLEGRLDELGEGELADEDLKKID-RIYIVACGTSYHAGLVAKYLIESLAGIPVE-- 320 Query: 95 FVHAA-EASHGDLGMITRDDLIIVLSWSG-SSDELKAILYYARRFSIPLIAITSENKSVV 152 V A E + D +++ L+I +S SG ++D L A L A+ +AI + S + Sbjct: 321 -VEIASEFRYRD-PVLSPKTLVIAISQSGETADTLAA-LRLAKELGAKTLAICNVPGSTI 377 Query: 153 ACHADIVLTLPKEPESCPHGLAPT---TSAIMQLAIGDALAIALLESRN 198 A +D VL PE G+A T T+ + L + LA+AL ++R Sbjct: 378 ARESDAVLYTHAGPEI---GVASTKAFTAQLAVLYL---LALALAKARG 420 >gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases. Length = 372 Score = 26.7 bits (59), Expect = 9.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 66 RVVITGIGKSGHIGSKLASTLAS 88 R+V+TG G S IG LA LAS Sbjct: 44 RIVLTGAGTSAFIGDALAPWLAS 66 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.397 Gapped Lambda K H 0.267 0.0819 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,424,938 Number of extensions: 347721 Number of successful extensions: 859 Number of sequences better than 10.0: 1 Number of HSP's gapped: 833 Number of HSP's successfully gapped: 63 Length of query: 341 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 247 Effective length of database: 3,963,321 Effective search space: 978940287 Effective search space used: 978940287 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.6 bits)