RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764505|ref|YP_003065248.2| polysialic acid capsule
expression protein [Candidatus Liberibacter asiaticus str. psy62]
(341 letters)
>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional.
Length = 326
Score = 277 bits (711), Expect = 2e-75
Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 8/311 (2%)
Query: 34 EKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPS 93
E+ GL+ L+ + + F A EK+ KG+VV+ G+GKSGHIG K+A+T ASTGTPS
Sbjct: 21 EREGLAELDQYINQD----FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPS 76
Query: 94 FFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVA 153
FFVH EA+HGDLGM+T D++I +S SG S E+ A++ +R +PLI IT +S +A
Sbjct: 77 FFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMA 136
Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKL 213
ADI L + E+CP GLAPT+S L +GDALA+ALL++R F+ DF + HPGG L
Sbjct: 137 RAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGAL 196
Query: 214 G-TLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272
G L + SD+MH+GD IP V L DA+ ++ K G + D+ K++GI T+GD+
Sbjct: 197 GRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDL 256
Query: 273 FRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
R F DL S+ DVM + L A+ L++ +I+ ++V D +G++
Sbjct: 257 RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVL 315
Query: 331 HFLDLLRFGII 341
H DLLR G++
Sbjct: 316 HMHDLLRAGVV 326
>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a
number of closely related proteins with the
phosphosugar-binding domain SIS (Sugar ISomerase)
followed by two copies of the CBS (named after
Cystathionine Beta Synthase) domain. One is GutQ, a
protein of the glucitol operon. Another is KpsF, a
virulence factor involved in capsular polysialic acid
biosynthesis in some pathogenic strains of E. coli.
Length = 268
Score = 271 bits (695), Expect = 1e-73
Identities = 122/269 (45%), Positives = 167/269 (62%), Gaps = 3/269 (1%)
Query: 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSS 124
G++VI GIGKSG IG K+ +T ASTGTPSFF+H EA HGDLGM+ +D+++++S+SG S
Sbjct: 1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES 60
Query: 125 DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLA 184
EL ++ + +R S +IA T S +A AD VL + E E+CP LAPTTS + LA
Sbjct: 61 LELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLA 120
Query: 185 IGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIPLVKIGCPLIDAI 243
+GDALA+AL+ +RNFS+ DF HPGG LG L V D+M + D +PL+ DA+
Sbjct: 121 LGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDLMQTTD-LPLIAPTTSFKDAL 179
Query: 244 TILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-DLNTLSVEDVMIKNPKVILEDTLL 302
+SEKR G V DE +L G+ T+GD+ R V D M PK D LL
Sbjct: 180 LEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239
Query: 303 TVAMQLLRQHNISVLMVVDDCQKAIGIVH 331
A++ L + I+ L+VVDD K +G++H
Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVLH 268
>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional.
Length = 321
Score = 248 bits (636), Expect = 1e-66
Identities = 117/292 (40%), Positives = 171/292 (58%), Gaps = 4/292 (1%)
Query: 53 FHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRD 112
F A I +G+VV++GIGKSGHIG K+A+TLASTGTP+FFVH AEA HGDLGMI
Sbjct: 31 FVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESR 90
Query: 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172
D+++ +S+SG + EL I+ SI L+A+T + S + A VL + E E+CP
Sbjct: 91 DVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMH 150
Query: 173 LAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGT-LFVCASDVMHSGDSIP 231
LAPT+S + L +GDALA+A++++R F+E DF HP G LG L +M D+IP
Sbjct: 151 LAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIP 210
Query: 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLS--VEDVM 289
V + ++DA+ LS G VAV D Q+++G+ T+GD+ R L+ V + M
Sbjct: 211 QVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-GALTTPVNEAM 269
Query: 290 IKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGII 341
+ + + A ++L + I+ VVD+ K G ++ D + GII
Sbjct: 270 TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII 321
>gnl|CDD|180134 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 59.4 bits (145), Expect = 1e-09
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKV-I 296
L +A+ +++ V VVDE KL GIIT D+ F DL+ V +VM K V +
Sbjct: 105 TLAEALALMARYGISGVPVVDENGKLVGIITNRDV--RFETDLSQP-VSEVMTKERLVTV 161
Query: 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
E T L A++LL +H I L VVDD + G++
Sbjct: 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195
Score = 39.0 bits (92), Expect = 0.002
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-----FRN 275
S+VM + V G L +A+ +L E R + VVD+ +LKG+IT DI F N
Sbjct: 150 SEVMTKERLV-TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPN 208
Query: 276 FHKD 279
KD
Sbjct: 209 ACKD 212
Score = 38.6 bits (91), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
E ++ +P + DT L A+ L+ ++ IS + VVD+ K +GI+ D +RF
Sbjct: 90 ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD-VRF 141
>gnl|CDD|162293 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes a rather tightly conserved cluster
of IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models.
Length = 450
Score = 57.0 bits (138), Expect = 8e-09
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 238 PLIDAITILSEKRFGCVAVVDEG---QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294
+ D + ++ K + VV++G KL GIIT+ DI F KD V +VM + +
Sbjct: 98 TVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI--RFVKDKGK-PVSEVMTRE-E 153
Query: 295 VIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
VI E L A+++L +H I L VVD + +G++ D+++
Sbjct: 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198
Score = 35.4 bits (82), Expect = 0.022
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275
S+VM + + + V G L +A+ +L E R + VVD+ +L G+IT DI +
Sbjct: 146 SEVM-TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199
Score = 31.5 bits (72), Expect = 0.33
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD---CQKAIGIV 330
E+ +I +P I +T + ++L+ + IS + VV+D K +GI+
Sbjct: 83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGII 130
>gnl|CDD|185550 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 50.0 bits (120), Expect = 1e-06
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 238 PLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK 294
+ D + I +K F + + +G+ KL GI+T DI +F KD +T V +VM K
Sbjct: 114 TVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDI--DFVKDKSTP-VSEVMTPREK 170
Query: 295 VILEDTLLTV--AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
+++ +T +++ A ++LR+ L +V+D + + +V DL +
Sbjct: 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK 215
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 220 ASDVMHSGDSIPLVKI-GCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK 278
A + ++ P+ K A+ ++ ++R + VVD KL G++ I + K
Sbjct: 241 AERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK 300
Query: 279 DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
++DV+I + + TLL ++ + + I V VVD+ Q+ +GIV
Sbjct: 301 A---QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIKV-PVVDEDQRLVGIV 348
Score = 32.5 bits (74), Expect = 0.15
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGC-VAVVDEGQKLKGIITEGDIFR 274
DV+ D I V G L + + + + G V VVDE Q+L GI+T G +
Sbjct: 305 QDVLI--DDIYTVDAGTLLRETVRKVLKA--GIKVPVVDEDQRLVGIVTRGSLVD 355
Score = 32.5 bits (74), Expect = 0.17
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 282 TLSVEDVMIKNPKV---ILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
E + + D A+QL+R + L VVD K +G+V
Sbjct: 238 VFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVV 289
>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven.
Length = 454
Score = 48.3 bits (115), Expect = 3e-06
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF--HKDLNTLSVEDVMIKNPKVILE 298
DAI IL E F + VV E K+ G +T ++ K +V VM K I E
Sbjct: 356 DAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGE 415
Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
L+ + L ++ S +V ++ K IG+V +DLL F
Sbjct: 416 GEKLSDLSKFLEKN--SSAIVTEE-GKPIGVVTKIDLLSF 452
Score = 33.6 bits (77), Expect = 0.076
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 278 KDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
L +V+D+ + P + + A+++LR++ L VV + K +G V +LL
Sbjct: 330 DVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLS 389
>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR;
Provisional.
Length = 292
Score = 47.4 bits (113), Expect = 5e-06
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 108 MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE 167
++ D+++V+S SG + ++ + A++ +I IT+ S +A AD V+
Sbjct: 184 LLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTA-QG 242
Query: 168 SCPHGLAPTTSA-IMQLAIGDALAIAL 193
S L +A I QL I DA +++
Sbjct: 243 S--PLLGENAAARIAQLNILDAFFVSV 267
>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family
transcriptional regulator; Provisional.
Length = 638
Score = 44.5 bits (105), Expect = 4e-05
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 45 LQGELSFQFHCAVEK-IKAIKG--RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA 101
L+ L+F+ VE+ I + R+ G+G S + G P+
Sbjct: 449 LREHLNFE---HVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTI------- 498
Query: 102 SHGDLGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154
++GDL M + + D+I+ +S SG + EL +L A + +IAITS N + +A
Sbjct: 499 AYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSN-TPLAK 557
Query: 155 HADIVLTL--PKEPESCPHGLAPTTSAIMQLAIGDALAIAL 193
A + L + ES S I+ L + D LA+ +
Sbjct: 558 RATVALETDHIEMRES----QLSMISRILHLVMIDILAVGV 594
>gnl|CDD|184871 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 44.4 bits (106), Expect = 4e-05
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 282 TLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337
V D+ I P + DT L A L+ ++N+ L VVD+ K +G+V DL R
Sbjct: 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR 122
Score = 42.1 bits (100), Expect = 2e-04
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKV 295
L +A ++ E + VVDE KL G+++ D+ R + D LS ++N
Sbjct: 86 SLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIR 145
Query: 296 ILEDTLLT 303
L+ +L
Sbjct: 146 TLDGEVLV 153
Score = 32.5 bits (75), Expect = 0.16
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 220 ASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272
S +M + D + L D ++ + R+ VVDE K+ G+I+ +
Sbjct: 248 VSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL 299
>gnl|CDD|128426 smart00116, CBS, Domain in cystathionine beta-synthase and other
proteins. Domain present in all 3 forms of cellular
life. Present in two copies in inosine monophosphate
dehydrogenase, of which one is disordered in the crystal
structure [3]. A number of disease states are associated
with CBS-containing proteins including homocystinuria,
Becker's and Thomsen disease.
Length = 49
Score = 44.4 bits (106), Expect = 4e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277
L +A+ +L E + VVDE +L GI+T DI +
Sbjct: 10 TLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKALA 49
Score = 40.2 bits (95), Expect = 7e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338
+ + DT L A++LLR+H I L VVD+ + +GIV D+++
Sbjct: 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47
>gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase.
This protein, MurQ, is involved in recycling components
of the bacterial murein sacculus turned over during cell
growth. The cell wall metabolite anhydro-N-acetylmuramic
acid (anhMurNAc) is converted by a kinase, AnmK, to
MurNAc-phosphate, then converted to
N-acetylglucosamine-phosphate by this etherase, called
MurQ. This family of proteins is similar to the
C-terminal half of a number of vertebrate glucokinase
regulator proteins and contains a Prosite pattern which
is shared by this group of proteins in a region of local
similarity.
Length = 291
Score = 44.1 bits (104), Expect = 6e-05
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 65 GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAAE-------ASHG 104
GR++ G G SG +G AS T G +HA E A
Sbjct: 58 GRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGAN 117
Query: 105 DLGMI--TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTL 162
DL I T++D+++ ++ SG + + A L YAR I+I KS + ADI +
Sbjct: 118 DLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177
Query: 163 PKEPE 167
PE
Sbjct: 178 IVGPE 182
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 43.1 bits (102), Expect = 9e-05
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 24/169 (14%)
Query: 175 PTTSAIMQLAIGDALAIALLESRNFS--------ENDFYVLHPGGKLGTLFVCASDVMHS 226
P SAIMQ D +AIAL S E++ ++ FV SD +
Sbjct: 53 PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFV-VSDSNLT 111
Query: 227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFRNFHKDLNTL 283
D+ L D + + + VAV ++G KL GI+T D +R L+T
Sbjct: 112 PDN--------TLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRD-YRISRMSLDTK 162
Query: 284 SVEDVMIKNPKVIL--EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIV 330
V+D M K++ E T L A ++ H ++ L +VD + +V
Sbjct: 163 -VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLV 210
>gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator;
Provisional.
Length = 278
Score = 42.8 bits (101), Expect = 1e-04
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 31 IIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG 90
+I E +++ ++L + H V +++ + R+++TGIG SG + A L G
Sbjct: 98 LIKEN--TAAMRATLDVNSEEKLHECVTMLRSAR-RIILTGIGASGLVAQNFAWKLMKIG 154
Query: 91 TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150
+ A + ++ DDL++ +S+SG EL A R ++AIT +
Sbjct: 155 INAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPN 214
Query: 151 VVACHADIVL-TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLE 195
+ A L T+ +E + A +S Q + D L +AL++
Sbjct: 215 ALQQRASHCLYTIAEEQATRS---AAISSTHAQGMLTDLLFMALIQ 257
>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this
protein family are 6-phospho 3-hexuloisomerase (PHI), or
the PHI domain of a fusion protein. This enzyme is part
of the ribulose monophosphate (RuMP) pathway, which in
one direction removes the toxic metabolite formaldehyde
by assimilation into fructose-6-phosphate. In the other
direction, in species lacking a complete pentose
phosphate pathway, the RuMP pathway yields
ribulose-5-phosphate, necessary for nucleotide
biosynthesis, at the cost of also yielding formaldehyde.
These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin.
Length = 179
Score = 41.9 bits (99), Expect = 3e-04
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM--ITRDDLIIVLSWSG 122
R+ + G G+SG +G A L G + V G+ I + DL+I +S SG
Sbjct: 31 KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVV-------GETTTPSIKKGDLLIAISGSG 83
Query: 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP----KEPESCPHGLAPTTS 178
++ L + A+ + AIT+ +S + AD+V+ +P K+ E + P S
Sbjct: 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGS 143
Query: 179 AIMQ--LAIGDALAIALLESRNFSENDFYVLH 208
Q L DA+ + L++ + E + H
Sbjct: 144 LFEQSLLLFLDAVILKLMKKKGLDEEEMKKRH 175
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 39.5 bits (93), Expect = 0.001
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298
DA+ +L ++ G V VVDE + G++TE D F V DVM + +
Sbjct: 110 DALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRF------TQVRDVMSTDLVTLPA 163
Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340
T A LL + + VVD + +G++ LR I
Sbjct: 164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205
>gnl|CDD|183600 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 296
Score = 39.7 bits (93), Expect = 0.001
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 56 AVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-------------GTPSFFVHAA 99
AV+KI A K GR++ G G SG +G AS T G P A
Sbjct: 47 AVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAV 106
Query: 100 EASHGDLGMI---------TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150
E + D + T DD+++ ++ SG + + L YA++ IA++ S
Sbjct: 107 EGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDS 166
Query: 151 VVACHADIVLTLPKEPE 167
+A ADI ++ PE
Sbjct: 167 PIAKIADIAISPVVGPE 183
>gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR;
Provisional.
Length = 284
Score = 38.1 bits (89), Expect = 0.004
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPH 171
D+++++S +G + L + AR +IAITS S +A A + LTL PE
Sbjct: 176 GDVVVLISHTGRTKSLVELAQLARENGATVIAITSAG-SPLAREATLALTLD-VPEDTDI 233
Query: 172 GLAPTTSAIMQLAIGDALA 190
+ P S I QL + D LA
Sbjct: 234 YM-PMVSRIAQLTVIDVLA 251
>gnl|CDD|162718 TIGR02128, G6PI_arch, bifunctional phosphoglucose/phosphomannose
isomerase. This bifunctional isomerase is a member of
the larger PGI superfamily and only distantly related to
other glucose-6-phosphate isomerases. The family is
limited to the archaea.
Length = 308
Score = 36.6 bits (85), Expect = 0.008
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 57 VEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDD 113
+++I I +VI G+G SG I ++ S L + V + D + +
Sbjct: 14 IDEILKIYDEIVICGMGGSG-IAGRIISILLLEKSFQGPVFVVK----DYRLPRFVDGKT 68
Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146
L+I +S+SG+++E + + A++ +IAITS
Sbjct: 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITS 101
>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
isomerase; Validated.
Length = 337
Score = 36.9 bits (86), Expect = 0.008
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 40 SLESSLQGELSFQFHCAVE-KIKAIKGRVVITGIGKSGHIGSKLASTLASTGTP-SFFVH 97
+ + L +E ++ I +VI+G+G SG IG L L FV+
Sbjct: 10 NWPEQFEEALEIAISLDLEEDLEKID-NIVISGMGGSG-IGGDLLRILLFDELKVPVFVN 67
Query: 98 AAEASHGDL--GMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146
+ L+I +S+SG+++E + + A + +IAITS
Sbjct: 68 -----RDYTLPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS 113
>gnl|CDD|178531 PLN02945, PLN02945, nicotinamide-nucleotide
adenylyltransferase/nicotinate-nucleotide
adenylyltransferase.
Length = 236
Score = 35.4 bits (82), Expect = 0.019
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 209 PGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIIT 268
+ + +C SD++ S S P V I TI + +G V + EGQ ++ +++
Sbjct: 126 SEESVRVMLLCGSDLLESF-STPGVWIP---DQVRTICRD--YGVVCIRREGQDVEKLVS 179
Query: 269 EGDIFRNFHKDLNTLSVEDV 288
+ +I ++ N L V+D+
Sbjct: 180 QDEILNE-NRG-NILVVDDL 197
>gnl|CDD|180083 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 33.2 bits (77), Expect = 0.093
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 25/138 (18%)
Query: 55 CAVEKI-KAIK--GRVVITGIGKSGHIGSKLASTLAST-GTP------------SFFVHA 98
AV+ A++ GR++ G G SG +G AS T G P A
Sbjct: 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKA 109
Query: 99 AEASHGD--LGM-------ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149
E + D LG +T D+++ ++ SG + + L YAR I I+
Sbjct: 110 VEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPG 169
Query: 150 SVVACHADIVLTLPKEPE 167
S ++ ADI + + PE
Sbjct: 170 SPLSKEADIAIEVVVGPE 187
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302.
Length = 475
Score = 32.6 bits (74), Expect = 0.14
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 241 DAITILSEKRFGCVAVVDEGQKLKGIITEGDI--FRNFHKDLNTLSVEDVMIKNPKVILE 298
DA+ ++ ++ G V+ E + + G++T+ D+ F + V D+M +
Sbjct: 109 DAMALIHKRAHGAAVVILEDRPV-GLVTDSDLLGVDRFTQ------VRDIMSTDLVTAPA 161
Query: 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340
DT A LL V +VD GI+ LR I
Sbjct: 162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203
>gnl|CDD|181854 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 32.6 bits (75), Expect = 0.14
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180
SG+S AI A R+ I L+ +T + V+ V P TT A
Sbjct: 195 SGTSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDP----VDTTGA- 249
Query: 181 MQLAIGDALAIALL 194
GDA LL
Sbjct: 250 -----GDAFVAGLL 258
>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 32.3 bits (74), Expect = 0.18
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275
S+VM S D + G L +A +L + + G + +V+E +L ++T D+ R
Sbjct: 166 SEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220
>gnl|CDD|185379 PRK15482, PRK15482, transcriptional regulator MurR; Provisional.
Length = 285
Score = 32.0 bits (72), Expect = 0.26
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 67 VVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM---ITRDDLIIVLSWSGS 123
+ ITG+G S +G L+ L G + V +H + + + D+ I +S+SGS
Sbjct: 138 IQITGLGGSALVGRDLSFKLMKIG---YRVACEADTHVQATVSQALKKGDVQIAISYSGS 194
Query: 124 SDELKAILYYARRFSIPLIAITSENKSVVACHADIVL-TLPKEPESCPHGLAPTTSAIMQ 182
E+ AR+ +IAITS S + A L T+ E E ++ T+ Q
Sbjct: 195 KKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTA---Q 251
Query: 183 LAIGDALAIALLE 195
++ D L + L++
Sbjct: 252 NSVTDLLFVGLVQ 264
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein.
Length = 607
Score = 31.4 bits (72), Expect = 0.36
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPES 168
+ +D L+I +S SG + + A L A+ + I + S + +D L PE
Sbjct: 336 VDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEI 395
Query: 169 CPHGLAPTTSAIMQLAIGDALAIALLESRN 198
G+A T + QL + LA+ L ++R
Sbjct: 396 ---GVASTKAFTTQLTVLYLLALKLAKARG 422
Score = 27.6 bits (62), Expect = 4.6
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 98 AAEASHGDLGMITRDDLIIVLSWSGSS--------DELKAILYYARRFSIPLIAITSENK 149
A E HG + +I ++ ++ S +E+KA R + +I E+
Sbjct: 498 AGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEVKA------RGA-RVIVFADEDD 550
Query: 150 SVVACHADIVLTLPKEPESCPHGLAPTTSAI-MQLAIGDALAIALL 194
+ AD V+ LP+ LAP + +QL A IAL
Sbjct: 551 EFLESVADDVIKLPE----VEELLAPIVYTVPLQLL---AYHIALA 589
>gnl|CDD|179226 PRK01115, PRK01115, DNA polymerase sliding clamp; Validated.
Length = 247
Score = 30.6 bits (70), Expect = 0.69
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 106 LGMITRDDLIIVLSWSGSSDELKAILYYA--RRFSIPLIAITSEN 148
L + D + L ++LK R FS+PL+ ++SE
Sbjct: 79 LKRAKKGDKLE-LELDEEENKLKITFGGEKTREFSLPLLDVSSEE 122
>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated.
Length = 322
Score = 29.6 bits (67), Expect = 1.2
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 61 KAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFV-------HAAEASHGDLGMITRDD 113
+ KG V+ITG SG +G A LA G + V AEA+ +LG I D
Sbjct: 3 QDAKGTVIITG-ASSG-VGLYAAKALAKRG---WHVIMACRNLKKAEAAAQELG-IPPDS 56
Query: 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG 172
I+ G D ++ + R PL A+ C+A + + L KEP P G
Sbjct: 57 YTIIHIDLGDLDSVRRFVDDFRALGKPLDALV--------CNAAVYMPLLKEPLRSPQG 107
>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
Length = 246
Score = 29.5 bits (67), Expect = 1.2
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 34/118 (28%)
Query: 109 ITRDDLIIVLSWSG---SSDELKAILYYARRFSIPLIAITS--ENKSVVACH-------- 155
I D++IV+S SG E+ A+ A+ +IA+TS + SV + H
Sbjct: 104 IRPGDVLIVVSNSGRNPVPIEM-AL--EAKERGAKVIAVTSLAYSASVASRHSSGKRLAE 160
Query: 156 -ADIVL---------TLPKEPESCPHGLAPT----TSAIMQLAIGDALAIALLESRNF 199
AD+VL L P + P +AI+ A L R
Sbjct: 161 VADVVLDNGAPKGDAVLEIPGLEAP--VGPVSTVVGAAILNAIF--AEVAERLVERGI 214
>gnl|CDD|179374 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 54 HCAV--EKIKAIKG-RVVITGIGKSGHIG 79
+C EKI+A G + GIG++GHIG
Sbjct: 145 YCRDYEEKIEAAGGIDFQLLGIGRTGHIG 173
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 29.2 bits (66), Expect = 1.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 237 CPLIDAITILSEKRFGCVAVVDEGQKL 263
PL D + I + FGCV VVDE L
Sbjct: 198 APLADIVDI--AEEFGCVLVVDESHSL 222
>gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 256
Score = 29.0 bits (65), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 61 KAIKGRV-VITGIGKSGHIGSKLASTLASTGTPSFFVH 97
+K +V V+TG+ + IG+ + LA G FF +
Sbjct: 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY 39
>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of
prokaryotic proteins models a class of Mg++ transporter
first described in Bacillus firmus. May form a
homodimer.
Length = 449
Score = 28.3 bits (63), Expect = 3.1
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 28/93 (30%)
Query: 256 VVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLT-----VAMQ--- 307
V +E + LKG LS+ D+++ P+ IL + + V +
Sbjct: 172 VTNESKHLKG----------------VLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQE 215
Query: 308 ----LLRQHNISVLMVVDDCQKAIGIVHFLDLL 336
L+++++ + VVD+ + +GIV D++
Sbjct: 216 EVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 27.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 76 GHI--GSKLASTLASTGTP---SFFVHAAEASHGDLGMITRDDLI 115
GH+ + +T G P S+ V AAE SHG++ M++ ++++
Sbjct: 225 GHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEIL 269
>gnl|CDD|152352 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 414
Score = 27.8 bits (62), Expect = 4.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 140 PLIAITSENKSVVA--CHADIVLTLPKEPESCPH 171
L TS + + DI LTL ++P+
Sbjct: 33 LLAGFTSNRPGALLSLRYKDIELTLIRDPDGGRP 66
>gnl|CDD|177742 PLN00133, PLN00133, class I-fumerate hydratase; Provisional.
Length = 576
Score = 27.1 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQ 182
CH V+ LP+ SCP G+ + SA Q
Sbjct: 331 CHDVRVIRLPRHGASCPVGIGVSCSADRQ 359
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 120 WSGSSDELKAILYYARRFSIPLIA 143
W+ S D+L+AIL + RR + ++A
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVA 196
>gnl|CDD|178980 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 26.5 bits (60), Expect = 9.2
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 40 SLESSLQGELSFQFHC--AVEKIKAIKGRVVITGIGKS---GHIGSKLASTLASTGTPSF 94
++ +L+G L A E +K I R+ I G S G + L +LA
Sbjct: 264 AIRDTLEGRLDELGEGELADEDLKKID-RIYIVACGTSYHAGLVAKYLIESLAGIPVE-- 320
Query: 95 FVHAA-EASHGDLGMITRDDLIIVLSWSG-SSDELKAILYYARRFSIPLIAITSENKSVV 152
V A E + D +++ L+I +S SG ++D L A L A+ +AI + S +
Sbjct: 321 -VEIASEFRYRD-PVLSPKTLVIAISQSGETADTLAA-LRLAKELGAKTLAICNVPGSTI 377
Query: 153 ACHADIVLTLPKEPESCPHGLAPT---TSAIMQLAIGDALAIALLESRN 198
A +D VL PE G+A T T+ + L + LA+AL ++R
Sbjct: 378 ARESDAVLYTHAGPEI---GVASTKAFTAQLAVLYL---LALALAKARG 420
>gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family. Some
members of this protein family are found in regions
associated with N-acetyl-galactosamine and
galactosamine untilization and are suggested to be
isomerases.
Length = 372
Score = 26.7 bits (59), Expect = 9.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 66 RVVITGIGKSGHIGSKLASTLAS 88
R+V+TG G S IG LA LAS
Sbjct: 44 RIVLTGAGTSAFIGDALAPWLAS 66
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.397
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,424,938
Number of extensions: 347721
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 63
Length of query: 341
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 247
Effective length of database: 3,963,321
Effective search space: 978940287
Effective search space used: 978940287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)