Query gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 115 out of 1575
Neff 5.5
Searched_HMMs 33803
Date Wed Jun 1 19:59:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764506.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1a8r_A GTP cyclohydrolase I; 100.0 0 0 401.2 13.1 141 59-204 1-141 (142)
2 >1wur_A GTP cyclohydrolase I; 100.0 0 0 386.1 13.8 130 76-205 10-139 (140)
3 >1is8_A GTP cyclohydrolase I; 100.0 0 0 341.5 13.0 128 76-203 10-137 (137)
4 >1is8_A GTP cyclohydrolase I; 99.5 1.4E-14 4.2E-19 111.0 4.3 48 15-62 45-92 (93)
5 >1a8r_A GTP cyclohydrolase I; 99.4 6.8E-14 2E-18 106.7 4.1 47 14-60 32-79 (79)
6 >3bp1_A NADPH-dependent 7-cyan 95.0 0.16 4.6E-06 30.2 7.8 73 86-160 189-261 (290)
7 >1nbu_A DHNA, probable dihydro 38.2 30 0.00089 16.1 7.3 80 82-161 4-99 (119)
8 >1z9w_A DHNA, dihydroneopterin 37.7 31 0.00091 16.0 5.3 83 81-163 3-101 (133)
9 >3fut_A Dimethyladenosine tran 36.7 32 0.00094 15.9 3.9 34 22-55 31-64 (68)
10 >3fyd_A Probable dimethyladeno 36.5 10 0.0003 19.0 0.4 56 2-57 21-80 (85)
11 >2d2r_A Undecaprenyl pyrophosp 29.0 42 0.0012 15.2 2.5 37 97-133 200-238 (245)
12 >3b4x_A 367AA long hypothetica 26.3 45 0.0013 15.0 2.3 49 118-166 129-179 (228)
13 >2o90_A DHNA, dihydroneopterin 25.0 51 0.0015 14.7 10.3 84 82-165 3-102 (122)
14 >1b9l_A Protein (epimerase); 2 24.7 51 0.0015 14.6 5.4 84 81-164 6-105 (120)
15 >1cbg_A Cyanogenic beta-glucos 21.6 31 0.00092 16.0 0.7 20 37-56 20-39 (41)
16 >2w1t_A Spovt, stage V sporula 21.1 57 0.0017 14.4 2.0 67 79-151 56-125 (126)
No 1
>>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} (A:80-221)
Probab=100.00 E-value=0 Score=401.17 Aligned_cols=141 Identities=38% Similarity=0.612 Sum_probs=134.3
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 08653123443202566556676289618058772110023465578999963885434677999999983154266899
Q gi|255764506|r 59 YKQIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERL 138 (205)
Q Consensus 59 y~~~~~~~~~~~~~~~~~~~~~~mVvv~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErl 138 (205)
|+++|+..+ +++.+++++||+++||+|+|+||||||||+|++||||+|+++|+|||||+|||++||||||+||||
T Consensus 1 Y~~~p~~~~-----f~~~~~~~~mViv~~I~f~S~CEHHllPf~G~~hVaYiP~~~viGlSKl~Riv~~~arRlQiQERl 75 (142)
T 1a8r_A 1 YANFPKITL-----IENKMKVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERL 75 (142)
T ss_dssp GGGCCCCCE-----EECTTCCCSCEEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHH
T ss_pred CCCCHHHHH-----CCCCCCCCCEEEECCCCEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 554413331-----111357663499727645765243453033468999972684004466999999998374007899
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 999999999732738479999948842522383559985999677744306889999999983268
Q gi|255764506|r 139 TMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFFLKMTHNQ 204 (205)
Q Consensus 139 T~qIa~~l~~~l~~~gv~V~i~A~H~Cm~~RGv~~~~s~~~T~~~~G~F~~d~~~r~ef~~li~~~ 204 (205)
|+|||++|++.|+|+||+|+++|+|+||.||||+++++.|+|++++|+|++|+++|+|||++++++
T Consensus 76 t~qIa~~l~~~l~p~gV~V~ieA~H~Cm~~RGv~~~~s~t~T~~~~G~F~~d~~~r~efl~~i~~~ 141 (142)
T 1a8r_A 76 TQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHH 141 (142)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEEEHHHHSSTTCCSSCEEEEEEECTHHHHCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 999999999972979679999989830524488889963899888868668989999999986236
No 2
>>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} (A:81-220)
Probab=100.00 E-value=0 Score=386.15 Aligned_cols=130 Identities=42% Similarity=0.847 Sum_probs=126.8
Q ss_pred CCCCCCEEEECCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 55667628961805877211002346557899996388543467799999998315426689999999999973273847
Q gi|255764506|r 76 ASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGV 155 (205)
Q Consensus 76 ~~~~~~mVvv~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv 155 (205)
.+++++||+++||+|+|+||||||||+|++||||+|+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||
T Consensus 10 ~~~~~~mViv~~I~f~S~CEHHlLPf~G~~hVaYiP~~~ViGlSKl~Riv~~~a~RlQiQERlt~qIa~al~~~l~p~gV 89 (140)
T 1wur_A 10 PAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGV 89 (140)
T ss_dssp ECSCSSCEEEEEEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCCEEEECCCEEEEEEHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 34567449975953552002127522456899996389756767899999999834012789999999999986297817
Q ss_pred EEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 99999488425223835599859996777443068899999999832688
Q gi|255764506|r 156 AVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFFLKMTHNQR 205 (205)
Q Consensus 156 ~V~i~A~H~Cm~~RGv~~~~s~~~T~~~~G~F~~d~~~r~ef~~li~~~r 205 (205)
+|+++|+|+||.|||++++++.|+|++++|+|++|+++|+|||+++++++
T Consensus 90 aV~i~a~H~Cm~~RGv~~~~~~~~T~~~~G~F~~d~~~r~efl~li~~~~ 139 (140)
T 1wur_A 90 GVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLRDGT 139 (140)
T ss_dssp EEEEEEEEHHHHSSTTCCSSCEEEEEEEEEHHHHCHHHHHHHHHHTC---
T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 99998898354457876799638999877676489899999999862469
No 3
>>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} (A:94-230)
Probab=100.00 E-value=0 Score=341.50 Aligned_cols=128 Identities=48% Similarity=0.861 Sum_probs=125.8
Q ss_pred CCCCCCEEEECCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 55667628961805877211002346557899996388543467799999998315426689999999999973273847
Q gi|255764506|r 76 ASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGV 155 (205)
Q Consensus 76 ~~~~~~mVvv~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv 155 (205)
.+++++||+++||+|+|+||||+|||+|++||||+|+++|+|||||+|+|++|++|||+|||||+|||++|++.|+|+||
T Consensus 10 ~~~~~~~V~~~~i~f~S~CehhllP~~g~v~I~YiP~~~viglskl~r~v~~~a~R~q~QErlt~~Ia~~l~~~l~p~gv 89 (137)
T 1is8_A 10 DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGV 89 (137)
T ss_dssp EEEECSCEEEEEEEEEEEETTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 56788439995146754013342551149999998389512566799999999738478889999999999974487818
Q ss_pred EEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 999994884252238355998599967774430688999999998326
Q gi|255764506|r 156 AVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFFLKMTHN 203 (205)
Q Consensus 156 ~V~i~A~H~Cm~~RGv~~~~s~~~T~~~~G~F~~d~~~r~ef~~li~~ 203 (205)
+|+++|+|+||.|||++++++.|+|++++|+|++|+++|+||++++++
T Consensus 90 ~V~~~a~H~C~~~Rgv~~~~~~~~t~~~~G~F~~d~~~r~ef~~li~~ 137 (137)
T 1is8_A 90 GVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS 137 (137)
T ss_dssp EEEEEEEEHHHHTTC--CTTCEEEEEEEEEHHHHCHHHHHHHHHHHCC
T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCC
T ss_conf 999988972625568878996189988677865798999999998529
No 4
>>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} (A:1-93)
Probab=99.50 E-value=1.4e-14 Score=110.99 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 224899999999999981478888100112678999999999760865
Q gi|255764506|r 15 KPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQI 62 (205)
Q Consensus 15 ~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~~e~~~Gy~~~ 62 (205)
+++.++|++||++||++|||||+||||.+||+||||||.|+|+||+++
T Consensus 45 ~~~~~~i~~av~~iL~~lGeD~~regL~~TP~Rvaka~~e~~~Gy~~d 92 (93)
T 1is8_A 45 ELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQET 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSTTTTTHHHHHHHHHHHHTGGGGCC
T ss_pred HHCHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHCCCC
T ss_conf 225899999999999996799996210146999999999996200358
No 5
>>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} (A:1-79)
Probab=99.44 E-value=6.8e-14 Score=106.75 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHH-HHHHHHCC
Q ss_conf 522489999999999998147888810011267899999-99997608
Q gi|255764506|r 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSY-KELFAGYK 60 (205)
Q Consensus 14 ~~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~-~e~~~Gy~ 60 (205)
.+++.++++++|+.||++||+||+|+||.+||+|||||| .|+|+||+
T Consensus 32 ~~~~~~~ie~~vr~iL~~lGeD~~regL~~TP~RvAka~~~e~~~Gyd 79 (79)
T 1a8r_A 32 NETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLD 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHHHHHTTTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 899999999999999999731867534344889999999998853878
No 6
>>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=95.00 E-value=0.16 Score=30.19 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=62.5
Q ss_pred CCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 180587721100234655789999638854346779999999831542668999999999997327384799999
Q gi|255764506|r 86 KDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIE 160 (205)
Q Consensus 86 ~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv~V~i~ 160 (205)
.-=.|.|.|.=-=+|=+|++.|-|+|++.. +-.|-+.+.-|-.+---+|..+.+|.+.|.+.++|+-+.|...
T Consensus 189 ~s~ef~s~CPvTgqPD~~ti~I~Y~p~~~~--~esLk~Yl~SfRn~~~fHE~~v~rI~~Dl~~~~~P~~l~V~a~ 261 (290)
T 3bp1_A 189 HSHLLKSNCLITNQPDWGSVEIAYHGAKXN--REALLRYLVSFREHNEFHEQCVERIFTDIXRYCQPQSLTVYAR 261 (290)
T ss_dssp EEEEEEEC------CEEEEEEEEEEEEEEC--HHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EECCEEECCCCCCCCCCEEEEEEECCCCCC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 844635348777998614899998676428--9999999999871262599999999999998549758999999
No 7
>>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} (A:)
Probab=38.19 E-value=30 Score=16.05 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=57.5
Q ss_pred EEEECCEEEEEEC-----CC-CEEEEEEEEEEEEECC--------CCCCCHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
Q ss_conf 2896180587721-----10-0234655789999638--------85434677999999983--1542668999999999
Q gi|255764506|r 82 MVLIKDISFFSYC-----EH-HILPIWGKIHLAYIPK--------KHVIGLSKLVRILEVYS--RRLQIQERLTMQIAHA 145 (205)
Q Consensus 82 mVvv~~I~f~S~C-----EH-HllPf~G~~~IaYiP~--------~~viGlSKl~Riv~~~a--~RlQ~QErlT~qIa~~ 145 (205)
-|.++|+.|+..= |. .-+||.=.+.+.|-++ ...+--+.+.+.+.-+. .+..+.|.|+.+|++.
T Consensus 4 ~I~i~~l~~~a~iGv~~~Er~~~Q~~~vdl~l~~~~~~~~~~Ddl~~tidY~~l~~~i~~~~~~~~~~llE~la~~i~~~ 83 (119)
T 1nbu_A 4 RIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIADH 83 (119)
T ss_dssp EEEEEEEEEEECCCSSTTHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEECCCHHHHCCCCEEEEEEEEEECCHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89992069999989798995689889999999962422235556233654899999999999765688999999999999
Q ss_pred HHHHCCCCCEEEEEEE
Q ss_conf 9973273847999994
Q gi|255764506|r 146 IESSTDSKGVAVLIEG 161 (205)
Q Consensus 146 l~~~l~~~gv~V~i~A 161 (205)
+.+.-+...|-|.++-
T Consensus 84 i~~~~~v~~v~v~i~K 99 (119)
T 1nbu_A 84 VMDDQRVHAVEVAVHK 99 (119)
T ss_dssp HHTSTTCCEEEEEEEC
T ss_pred HHCCCCCEEEEEEEEC
T ss_conf 8621894299999998
No 8
>>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB structural genomics; 2.50A {Mycobacterium tuberculosis H37RV} (A:)
Probab=37.72 E-value=31 Score=16.01 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=57.6
Q ss_pred CEEEECCEEEEEEC-----C-CCEEEEEEEEEEEEECCC--------CCCCHHHHHHHHHHH-H-CCCCCHHHHHHHHHH
Q ss_conf 62896180587721-----1-002346557899996388--------543467799999998-3-154266899999999
Q gi|255764506|r 81 DMVLIKDISFFSYC-----E-HHILPIWGKIHLAYIPKK--------HVIGLSKLVRILEVY-S-RRLQIQERLTMQIAH 144 (205)
Q Consensus 81 ~mVvv~~I~f~S~C-----E-HHllPf~G~~~IaYiP~~--------~viGlSKl~Riv~~~-a-~RlQ~QErlT~qIa~ 144 (205)
+.|.++|+.|+..- | +.-+||.=.+.+.|-+.. ..+--..+.+.+.-+ . ++..+.|.|+.+|++
T Consensus 3 d~I~i~~l~~~a~iGv~~~Er~~~Q~v~idi~l~~~~~~a~~~D~l~~tidY~~i~~~i~~~~~~~~~~llE~la~~i~~ 82 (133)
T 1z9w_A 3 DRIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIAD 82 (133)
T ss_dssp CEEEEEEEEEEC-----------CCEEEEEEEEEECCCCGGGCSSHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred CEEEEECEEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78999136999998969899467978999999996454333443434483389999999998717976229999999999
Q ss_pred HHHHHCCCCCEEEEEEEEE
Q ss_conf 9997327384799999488
Q gi|255764506|r 145 AIESSTDSKGVAVLIEGQH 163 (205)
Q Consensus 145 ~l~~~l~~~gv~V~i~A~H 163 (205)
.+.+.-....|-|.++--+
T Consensus 83 ~i~~~~~v~~v~v~i~Kp~ 101 (133)
T 1z9w_A 83 HVMDDQRVHAVEVAVHKPQ 101 (133)
T ss_dssp HHHHSTTEEEEEEEEEEEC
T ss_pred HHHHCCCCEEEEEEEECCC
T ss_conf 9971489419999999899
No 9
>>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* (A:204-271)
Probab=36.70 E-value=32 Score=15.91 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHH
Q ss_conf 9999999998147888810011267899999999
Q gi|255764506|r 22 KEAIRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55 (205)
Q Consensus 22 ~~av~~lL~~LGeDp~regL~~TP~Rvak~~~e~ 55 (205)
.+.+.++|..+|.||+.=.=.-||.-+++.+..+
T Consensus 31 k~~~~~~l~~~~i~~~~R~E~Ls~~~f~~L~~~l 64 (68)
T 3fut_A 31 KARVEEALRALGLPPRVRAEELDLEAFRRLREGL 64 (68)
T ss_dssp HHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHH
T ss_conf 8899999998696955492549999999999998
No 10
>>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA methylase, ribosomal assembly, methyltransferase, RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB: 3fyc_A* (A:179-263)
Probab=36.52 E-value=10 Score=18.99 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf 54322101----366652248999999999999814788881001126789999999997
Q gi|255764506|r 2 KCLRTGVF----NMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFA 57 (205)
Q Consensus 2 k~~r~~~~----~~~~~~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~~e~~~ 57 (205)
|.+|++.- ..+..++.+....+.+.+.|.++|.||+.=.-.-||.-+++.++.+..
T Consensus 21 KtLrn~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~gid~~~R~E~Ls~~ef~~La~~l~~ 80 (85)
T 3fyd_A 21 KSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 80 (85)
T ss_dssp SBHHHHHHHTGGGGTCCHHHHHHHHHHHHTSCHHHHHHHHSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf 679999886644406788999999985358544565553016554999999999999999
No 11
>>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A (A:)
Probab=29.04 E-value=42 Score=15.16 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=24.9
Q ss_pred CEEEEEEEEEEEEE-CCC-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 02346557899996-388-54346779999999831542
Q gi|255764506|r 97 HILPIWGKIHLAYI-PKK-HVIGLSKLVRILEVYSRRLQ 133 (205)
Q Consensus 97 HllPf~G~~~IaYi-P~~-~viGlSKl~Riv~~~a~RlQ 133 (205)
-+||..-..+==|. |.- .-++...|.+++..|++|-|
T Consensus 200 ~Fl~WQ~~~tEi~f~~~~wp~f~~~~~~~~l~~y~~~~~ 238 (245)
T 2d2r_A 200 NFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVR 238 (245)
T ss_dssp TSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 613340224569977888765999999999999986016
No 12
>>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A* (A:88-252,A:305-367)
Probab=26.29 E-value=45 Score=14.97 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEE
Q ss_conf 6779999999831542668999999999997327--384799999488425
Q gi|255764506|r 118 LSKLVRILEVYSRRLQIQERLTMQIAHAIESSTD--SKGVAVLIEGQHMCM 166 (205)
Q Consensus 118 lSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~--~~gv~V~i~A~H~Cm 166 (205)
-+-+.=.+-..++.|.+|++|-.+|-.+|.+.+. |.--...-.+.|.|.
T Consensus 129 a~~l~~~l~~L~~~Pevq~klr~Ei~~vi~E~LRl~P~~f~pFg~G~R~C~ 179 (228)
T 3b4x_A 129 TNLIGNAIEDFTLYNSWDYVREKGALKAVEEALRFSPNPHLSFGSGIHLCL 179 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCSHHHHHHHHHHSCCCCCTTCCSTTSCT
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 332000688876410021134455788988777644499777899880880
No 13
>>2o90_A DHNA, dihydroneopterin aldolase; monapterin, drug design, atomic resolution, X-RAY crystallography, lyase; HET: NEU; 1.07A {Escherichia coli} PDB: 2o9m_A* (A:)
Probab=24.95 E-value=51 Score=14.67 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=59.7
Q ss_pred EEEECCEEEEEE-----CCC-CEEEEEEEEEEEEEC------C--CCCCCHHHHHHHHHHH-H-CCCCCHHHHHHHHHHH
Q ss_conf 289618058772-----110-023465578999963------8--8543467799999998-3-1542668999999999
Q gi|255764506|r 82 MVLIKDISFFSY-----CEH-HILPIWGKIHLAYIP------K--KHVIGLSKLVRILEVY-S-RRLQIQERLTMQIAHA 145 (205)
Q Consensus 82 mVvv~~I~f~S~-----CEH-HllPf~G~~~IaYiP------~--~~viGlSKl~Riv~~~-a-~RlQ~QErlT~qIa~~ 145 (205)
.|.++|+.|+.. -|. .-+||.=.+.+.|=+ + ...+--+.+.+.+.-+ . .+.++.|.|+..||+.
T Consensus 3 ~I~i~~l~~~~~iGv~~~Er~~~Q~v~id~~l~~~~~~a~~~Ddl~~tidY~~i~~~i~~~~~~~~~~llE~la~~i~~~ 82 (122)
T 2o90_A 3 IVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETVVSHVEGARFALVERVAEEVAEL 82 (122)
T ss_dssp EEEEEEEEEEEEECSSGGGGGSCEEEEEEEEEEECTHHHHHHCCGGGSCCHHHHHHHHHHHHTTCEESCHHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99997769999988798994689689999999853643434566100214789999999998478755276999999999
Q ss_pred HHHHCCCCCEEEEEEEEEEE
Q ss_conf 99732738479999948842
Q gi|255764506|r 146 IESSTDSKGVAVLIEGQHMC 165 (205)
Q Consensus 146 l~~~l~~~gv~V~i~A~H~C 165 (205)
+.+.-....|-|.++--+-.
T Consensus 83 i~~~~~v~~v~v~i~Kp~~~ 102 (122)
T 2o90_A 83 LLARFNSPWVRIKLSKPGAV 102 (122)
T ss_dssp HHHHSSCSCEEEEEECTTSC
T ss_pred HHHHCCCCEEEEEEECCCCC
T ss_conf 98527995799999999999
No 14
>>1b9l_A Protein (epimerase); 2.90A {Escherichia coli} (A:)
Probab=24.73 E-value=51 Score=14.64 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred CEEEECCEEEEEE-----CCC-CEEEEEEEEEEEEEC------C--CCCCCHHHHHHHHHHH--HCCCCCHHHHHHHHHH
Q ss_conf 6289618058772-----110-023465578999963------8--8543467799999998--3154266899999999
Q gi|255764506|r 81 DMVLIKDISFFSY-----CEH-HILPIWGKIHLAYIP------K--KHVIGLSKLVRILEVY--SRRLQIQERLTMQIAH 144 (205)
Q Consensus 81 ~mVvv~~I~f~S~-----CEH-HllPf~G~~~IaYiP------~--~~viGlSKl~Riv~~~--a~RlQ~QErlT~qIa~ 144 (205)
+.|.++|+.|+.. .|. +-+||.=.+.+.|-. + ...+--+.+...+.-+ .++..+.|.|+.+||+
T Consensus 6 d~I~i~~l~~~~~iGv~~~Er~~~Q~v~idl~l~~~~~~a~~~D~l~~tidY~~i~~~i~~~~~~~~~~llE~la~~i~~ 85 (120)
T 1b9l_A 6 AIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLD 85 (120)
T ss_dssp EEEEEEEEEEEEEECSSHHHHHSCEEEEEEEEEEEEHHHHHGGGTCSSCCCHHHHHHHHHHHHHTSEESCHHHHHHHHHH
T ss_pred CEEEEECEEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 69999063999998979899478978999999985452044554255442789999999999746762679999999999
Q ss_pred HHHHHCCCCCEEEEEEEEEE
Q ss_conf 99973273847999994884
Q gi|255764506|r 145 AIESSTDSKGVAVLIEGQHM 164 (205)
Q Consensus 145 ~l~~~l~~~gv~V~i~A~H~ 164 (205)
.|.+.-+...|-|.++--+-
T Consensus 86 ~i~~~~~v~~v~v~i~Kp~~ 105 (120)
T 1b9l_A 86 IAREHHWVTYAEVEIDKLHA 105 (120)
T ss_dssp HHTCSTTCSEEEEEEEEETC
T ss_pred HHHHHCCCCEEEEEEECCCC
T ss_conf 99852699569999999897
No 15
>>1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens} (A:73-86,A:464-490)
Probab=21.57 E-value=31 Score=15.97 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.1
Q ss_pred CCHHHCCCHHHHHHHHHHHH
Q ss_conf 88100112678999999999
Q gi|255764506|r 37 DREGLKDTPDRVIKSYKELF 56 (205)
Q Consensus 37 ~regL~~TP~Rvak~~~e~~ 56 (205)
-.+||+..|+..|.||..|+
T Consensus 20 YkngLkRyPK~SA~WFk~FL 39 (41)
T 1cbg_A 20 FKNNLKRHPKLSAHWFKSFL 39 (41)
T ss_dssp TTTTTEEEECHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHH
T ss_conf 89996621215899999997
No 16
>>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A (A:53-178)
Probab=21.10 E-value=57 Score=14.36 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=49.0
Q ss_pred CCCEEEECCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHCC
Q ss_conf 676289618058772110023465578999963885434677999999983154---2668999999999997327
Q gi|255764506|r 79 YQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRL---QIQERLTMQIAHAIESSTD 151 (205)
Q Consensus 79 ~~~mVvv~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~Rl---Q~QErlT~qIa~~l~~~l~ 151 (205)
.+.++++.|=..+..|.-+=.++...+.+-.+-+++++|.=+| ++++. ..+.++...+|+.|...++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~~c~~~~~i~~Pi~~~~~viG~i~l------~~~~~~~~~~~~~~~~~la~lis~qlE 125 (126)
T 2w1t_A 56 QRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVI------FSKDQTMGEVEHKAVETAAGFLARQME 125 (126)
T ss_dssp TCSCEEESSCCCEESBTTCEECCSEEEEEEEEETTEEEEEEEE------EESSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEE------EECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 4988982688642123689987004899989999946789999------984887887999999999999998655
Done!