Query gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 115 out of 1575
Neff 5.5
Searched_HMMs 23785
Date Tue May 31 23:23:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764506.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1is8_A GTP cyclohydrolase I; e 100.0 0 0 526.4 17.4 186 15-203 45-230 (230)
2 1wur_A GTP cyclohydrolase I; b 100.0 0 0 515.0 19.3 189 14-205 31-219 (220)
3 1a8r_A GTP cyclohydrolase I; p 100.0 0 0 511.1 16.2 187 15-204 33-220 (221)
4 3bp1_A NADPH-dependent 7-cyano 94.1 0.23 9.8E-06 28.2 7.6 70 89-160 192-261 (290)
5 1nbu_A DHNA, probable dihydron 34.7 24 0.001 15.7 5.7 79 81-159 3-97 (119)
6 3ira_A Conserved protein; meth 26.6 33 0.0014 14.9 2.5 63 86-151 103-169 (173)
7 2w1r_A Spovt, stage V sporulat 23.3 38 0.0016 14.5 3.5 64 80-149 54-120 (123)
8 2o61_A Transcription factor P6 22.4 29 0.0012 15.2 1.5 46 105-150 267-312 (540)
9 1sql_A Dihydroneopterin aldola 18.9 47 0.002 13.9 6.2 83 78-160 19-118 (146)
10 5nul_A Flavodoxin; electron tr 18.8 31 0.0013 15.1 1.0 18 18-35 12-29 (138)
No 1
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=100.00 E-value=0 Score=526.41 Aligned_cols=186 Identities=41% Similarity=0.717 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEEC
Q ss_conf 22489999999999998147888810011267899999999976086531234432025665566762896180587721
Q gi|255764506|r 15 KPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKYQDMVLIKDISFFSYC 94 (205)
Q Consensus 15 ~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~~e~~~Gy~~~~~~~~~~~~~~~~~~~~~~mVvv~~I~f~S~C 94 (205)
+.+.+++++||++||++||+||+|+||.+||+||||||.|+|+||..++...+...|. .++|++||+++||+|+|+|
T Consensus 45 ~~~~~~~e~Av~~iL~~lGeDp~regL~~TP~Rvaka~~e~~~Gy~~~~~~~l~~~~~---~~~~~emViv~dI~f~S~C 121 (230)
T 1is8_A 45 ELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIF---DEDHDEMVIVKDIDMFSMC 121 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSTTTTTHHHHHHHHHHHHTGGGGCCTHHHHSSSCC---EEEECSCEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC---CCCCCCEEEEECCEEEEEC
T ss_conf 0278999999999999977999961001469999999999862212481677536556---5678842898422044422
Q ss_pred CCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf 10023465578999963885434677999999983154266899999999999732738479999948842522383559
Q gi|255764506|r 95 EHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRD 174 (205)
Q Consensus 95 EHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv~V~i~A~H~Cm~~RGv~~~ 174 (205)
|||||||+|++||||||+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||+++
T Consensus 122 EHHllPf~G~ahVaYiP~~~ViGLSKlaRiV~~~arRlQvQErLT~qIA~al~~~l~p~GVaV~ieA~H~Cm~~RGv~k~ 201 (230)
T 1is8_A 122 EHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKM 201 (230)
T ss_dssp TTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHHTTC--CT
T ss_pred CCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
T ss_conf 54435520289999984895256778999999997175788899999999999734878589999988836244688789
Q ss_pred CCEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 98599967774430688999999998326
Q gi|255764506|r 175 GLTTVTTAFTGEFSRDKGKTDFFLKMTHN 203 (205)
Q Consensus 175 ~s~~~T~~~~G~F~~d~~~r~ef~~li~~ 203 (205)
+|.|+|++++|+|++|+.+|+|||++|++
T Consensus 202 ~s~t~Ts~~~G~F~~d~~~R~EFl~li~~ 230 (230)
T 1is8_A 202 NSKTVTSTMLGVFREDPKTREEFLTLIRS 230 (230)
T ss_dssp TCEEEEEEEEEHHHHCHHHHHHHHHHHCC
T ss_pred CCCEEEEEEEEEECCCHHHHHHHHHHHCC
T ss_conf 97389988687866798999999998539
No 2
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=100.00 E-value=0 Score=515.04 Aligned_cols=189 Identities=39% Similarity=0.717 Sum_probs=178.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 52248999999999999814788881001126789999999997608653123443202566556676289618058772
Q gi|255764506|r 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKYQDMVLIKDISFFSY 93 (205)
Q Consensus 14 ~~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~~e~~~Gy~~~~~~~~~~~~~~~~~~~~~~mVvv~~I~f~S~ 93 (205)
.+.+.++++++|++||++|||||+|+||.+||+||||||.|+|+||+.+|+..+...+ ....+++||+++||+|+|+
T Consensus 31 ~~~d~~~ie~av~~iL~~lGeDp~regL~~TP~Rvak~~~e~~~Gy~~~~~~~~~~~~---~~~~~~~mVvv~~I~f~S~ 107 (220)
T 1wur_A 31 TEVDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAV---FPAEGSEMVVVKGVEFYSM 107 (220)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCCTTSGGGTTHHHHHHHHHHHHTGGGGCCHHHHHTTCE---EECSCSSCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCC---CCCCCCCEEEECCEEEEEE
T ss_conf 7336999999999999996799985332026999999999996465643023330223---5555665189716336772
Q ss_pred CCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf 11002346557899996388543467799999998315426689999999999973273847999994884252238355
Q gi|255764506|r 94 CEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKR 173 (205)
Q Consensus 94 CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv~V~i~A~H~Cm~~RGv~~ 173 (205)
||||||||+|+|||||+|+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++
T Consensus 108 CEHHllPf~G~~hVaYiP~~~ViGLSKl~RiV~~~arRlQ~QERLT~qIA~al~~~l~p~gVaV~ieA~H~Cm~~RGv~~ 187 (220)
T 1wur_A 108 CEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEK 187 (220)
T ss_dssp ETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHHSSTTCC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 11036732007999992599710478999999999706488889999999999997497817999988984533468747
Q ss_pred CCCEEEEEEEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 99859996777443068899999999832688
Q gi|255764506|r 174 DGLTTVTTAFTGEFSRDKGKTDFFLKMTHNQR 205 (205)
Q Consensus 174 ~~s~~~T~~~~G~F~~d~~~r~ef~~li~~~r 205 (205)
++|.|+|++++|+|++|+.+|+|||++|++.+
T Consensus 188 ~~s~~~T~~~~G~F~~d~~~R~EFl~li~~g~ 219 (220)
T 1wur_A 188 QHSRTVTSAMLGVFRENQKTREEFLSHLRDGT 219 (220)
T ss_dssp SSCEEEEEEEEEHHHHCHHHHHHHHHHTC---
T ss_pred CCCEEEEEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 99608999878676689899999999852468
No 3
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A*
Probab=100.00 E-value=0 Score=511.10 Aligned_cols=187 Identities=34% Similarity=0.535 Sum_probs=175.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 22489999999999998147888810011267899999-99997608653123443202566556676289618058772
Q gi|255764506|r 15 KPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFHFGEASKYQDMVLIKDISFFSY 93 (205)
Q Consensus 15 ~~~~~~i~~av~~lL~~LGeDp~regL~~TP~Rvak~~-~e~~~Gy~~~~~~~~~~~~~~~~~~~~~~mVvv~~I~f~S~ 93 (205)
+..+++++++|++||++||+||+|+||.+||+|||||| +|+|+||+.++..... .+++..+|++||+++||+|+|+
T Consensus 33 e~~~~~i~~~v~~iL~~lGeD~~regL~~TP~Rvak~y~~e~~~G~~~~~~~~~~---~~~~~~~~~~~Viv~~I~f~S~ 109 (221)
T 1a8r_A 33 ETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKIT---LIENKMKVDEMVTVRDITLTST 109 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHHHHHTTTGGGSGGGCCCCC---EEECTTCCCSCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHCCCCCCCCHHHH---HCCCCCCCCCEEEECCCEEEEE
T ss_conf 9999999999999999967998875112478999999999996688767444554---1002257675389616237762
Q ss_pred CCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf 11002346557899996388543467799999998315426689999999999973273847999994884252238355
Q gi|255764506|r 94 CEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKR 173 (205)
Q Consensus 94 CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv~V~i~A~H~Cm~~RGv~~ 173 (205)
||||||||+|++||||||+++|+|||||+|||++||||||+|||||+|||++|++.|+|+||+|+++|+|+||.||||++
T Consensus 110 CEHHllPf~G~~hIaYiP~~~ViGLSKl~Riv~~~arRlQvQERLT~qIa~al~~~l~~~GV~V~ieA~H~Cm~~RGv~~ 189 (221)
T 1a8r_A 110 CESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRD 189 (221)
T ss_dssp ETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCEEEEEEEEEHHHHSSTTCC
T ss_pred HHCCCCCCCCEEEEEEECCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 10045630317999997189233415899999999837354899999999999996387957999988985141238888
Q ss_pred CCCEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 9985999677744306889999999983268
Q gi|255764506|r 174 DGLTTVTTAFTGEFSRDKGKTDFFLKMTHNQ 204 (205)
Q Consensus 174 ~~s~~~T~~~~G~F~~d~~~r~ef~~li~~~ 204 (205)
++|.|+|++++|+|++|+++|+|||++|++.
T Consensus 190 ~~s~t~T~~~~G~F~~d~~~R~Efl~~i~~~ 220 (221)
T 1a8r_A 190 ATSATTTTSLGGLFKSSQNTRHEFLRAVRHH 220 (221)
T ss_dssp SSCEEEEEEECTHHHHCHHHHHHHHHHSCCC
T ss_pred CCCEEEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 9971999988878568989999999987236
No 4
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str}
Probab=94.05 E-value=0.23 Score=28.18 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=61.6
Q ss_pred EEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 587721100234655789999638854346779999999831542668999999999997327384799999
Q gi|255764506|r 89 SFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESSTDSKGVAVLIE 160 (205)
Q Consensus 89 ~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~~~gv~V~i~ 160 (205)
-|.|.|.--=+|=+|.+.|-|.|++ +-..-|-+.+--|-..---+|..+.+|...|.+.++|.-..|...
T Consensus 192 lfrS~CPvT~QPD~a~i~I~y~~~~--~~~~sL~~Yl~SfR~~~~FhE~~ve~If~dl~~~~~p~~l~V~~~ 261 (290)
T 3bp1_A 192 LLKSNCLITNQPDWGSVEIAYHGAK--MNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYAR 261 (290)
T ss_dssp EEEEC------CEEEEEEEEEEEEE--ECHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CEECCCCCCCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 7132698989986069999981752--489999999999972275799999999999998549758999999
No 5
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Probab=34.69 E-value=24 Score=15.71 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=49.8
Q ss_pred CEEEECCEEEEEECCCC------EEEEEEEEEEEEEC------C--CCCCCHHHHHHHHHHH--HCCCCCHHHHHHHHHH
Q ss_conf 62896180587721100------23465578999963------8--8543467799999998--3154266899999999
Q gi|255764506|r 81 DMVLIKDISFFSYCEHH------ILPIWGKIHLAYIP------K--KHVIGLSKLVRILEVY--SRRLQIQERLTMQIAH 144 (205)
Q Consensus 81 ~mVvv~~I~f~S~CEHH------llPf~G~~~IaYiP------~--~~viGlSKl~Riv~~~--a~RlQ~QErlT~qIa~ 144 (205)
+-|.++|+.|+...-=+ -+||.=.+.+.|-. + ...+--+.+.+.+.-+ +.+.++.|.|+.+||+
T Consensus 3 d~I~i~~l~~~a~iGv~~~Er~~~Q~~~vdl~l~~~~~~a~~~D~l~~tvdY~~v~~~i~~~~~~~~~~LlE~la~~i~~ 82 (119)
T 1nbu_A 3 DRIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIAD 82 (119)
T ss_dssp CEEEEEEEEEEECCCSSTTHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred CEEEEEEEEEEEEECCCHHHHCCCCEEEEEEEEEECCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999106999998979799678987999999996431223545645473646999999999864048799999999999
Q ss_pred HHHHHCCCCCEEEEE
Q ss_conf 999732738479999
Q gi|255764506|r 145 AIESSTDSKGVAVLI 159 (205)
Q Consensus 145 ~l~~~l~~~gv~V~i 159 (205)
.+.+.-....|-|.+
T Consensus 83 ~i~~~~~v~~v~v~v 97 (119)
T 1nbu_A 83 HVMDDQRVHAVEVAV 97 (119)
T ss_dssp HHHTSTTCCEEEEEE
T ss_pred HHHCCCCCEEEEEEE
T ss_conf 986317941999999
No 6
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, PSI, MCSG, protein structure initiative; 2.10A {Methanosarcina mazei GO1}
Probab=26.63 E-value=33 Score=14.86 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCEEEEEECCCCEEEEEEEEEEEEECCCC---CCCHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 18058772110023465578999963885---434677-9999999831542668999999999997327
Q gi|255764506|r 86 KDISFFSYCEHHILPIWGKIHLAYIPKKH---VIGLSK-LVRILEVYSRRLQIQERLTMQIAHAIESSTD 151 (205)
Q Consensus 86 ~~I~f~S~CEHHllPf~G~~~IaYiP~~~---viGlSK-l~Riv~~~a~RlQ~QErlT~qIa~~l~~~l~ 151 (205)
.+-|.+-++--..-||+| -.|+|... ..|+.. |.+|.+.+..+.+--+..+.+|.++|.+.++
T Consensus 103 gGwPl~vfltPdg~Pf~~---gTY~P~~~~~g~pgf~~vL~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~ 169 (173)
T 3ira_A 103 GGWPLNIIMTPGKKPFFA---GTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKITSTIQEMIK 169 (173)
T ss_dssp CCSSEEEEECTTSCEEEE---ESSCCSSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTCSHHHHHHH
T ss_pred CCCCEEEEECCCCCEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 997835566489962476---3157876667886799999999999997999999999999999999852
No 7
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=23.29 E-value=38 Score=14.47 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=43.9
Q ss_pred CCEEEECCEEEEEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHH
Q ss_conf 76289618058772110023465578999963885434677999999983154---26689999999999973
Q gi|255764506|r 80 QDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRL---QIQERLTMQIAHAIESS 149 (205)
Q Consensus 80 ~~mVvv~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~a~Rl---Q~QErlT~qIa~~l~~~ 149 (205)
...++..+-..+..|.++--|+...+-+--+-++.++|-=|| |++.. ..+..|..-+|+.|.+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~c~~~~~ii~PI~~~g~viG~l~l------~~~~~~~~~~e~~la~~~a~fLs~Q 120 (123)
T 2w1r_A 54 RSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVI------FSKDQTMGEVEHKAVETAAGFLARQ 120 (123)
T ss_dssp CSCEEESSCEEEESBTTCEEEESEEEEEEEEETTEEEEEEEE------EESSSCCCHHHHHHHHHHHHHHC--
T ss_pred CCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE------EECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999996798655675899987214899979989989999999------9848878989999999999999997
No 8
>2o61_A Transcription factor P65/interferon regulatory factor 7/interferon regulatory factor...; protein-DNA complex, transcription/DNA complex; 2.80A {Homo sapiens}
Probab=22.44 E-value=29 Score=15.22 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=37.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8999963885434677999999983154266899999999999732
Q gi|255764506|r 105 IHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESST 150 (205)
Q Consensus 105 ~~IaYiP~~~viGlSKl~Riv~~~a~RlQ~QErlT~qIa~~l~~~l 150 (205)
...-|.|++.+.--|.+.-=-.--++|++++++|-.||-..-+..|
T Consensus 267 ~~FtY~P~~~~~~~~~l~~~s~g~~~r~~~~~WL~~qv~s~~ypGl 312 (540)
T 2o61_A 267 MEFQYLPDGSLSSGSSLSSPSAGAAPRVLFGEWLLGEISSGCYEGL 312 (540)
T ss_dssp EEEEEECC---------------CCCCCCHHHHHHHHHHHTCSTTC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 6728837976666767888777887622478899998632775662
No 9
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=18.88 E-value=47 Score=13.90 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCCCEEEECCEEEEEECCC------CEEEEEEEEEEEEEC------C--CCCCCHHHHHHHHHHHH--CCCCCHHHHHHH
Q ss_conf 6676289618058772110------023465578999963------8--85434677999999983--154266899999
Q gi|255764506|r 78 KYQDMVLIKDISFFSYCEH------HILPIWGKIHLAYIP------K--KHVIGLSKLVRILEVYS--RRLQIQERLTMQ 141 (205)
Q Consensus 78 ~~~~mVvv~~I~f~S~CEH------HllPf~G~~~IaYiP------~--~~viGlSKl~Riv~~~a--~RlQ~QErlT~q 141 (205)
...+-|.++|+.|+..--- .-+||.=.+.+.|-- + ...+--+++.+++.-+. ++..+.|.|+.+
T Consensus 19 ~m~D~I~i~~l~~~a~iGv~~~ER~~~Q~~~vdi~l~~d~~~a~~sDdl~~TidY~~l~~~i~~~~~~~~~~LlE~la~~ 98 (146)
T 1sql_A 19 NLGDKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPRNLLETVAEL 98 (146)
T ss_dssp --CCEEEEEEEEEEECCCSSHHHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHH
T ss_pred CCCCEEEEECEEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 77788999165999996889899379987999999997462243557744453299999999998735758589999999
Q ss_pred HHHHHHHHCC-CCCEEEEEE
Q ss_conf 9999997327-384799999
Q gi|255764506|r 142 IAHAIESSTD-SKGVAVLIE 160 (205)
Q Consensus 142 Ia~~l~~~l~-~~gv~V~i~ 160 (205)
|++.|.+... -..|-|.|+
T Consensus 99 I~~~il~~~~~i~~v~v~I~ 118 (146)
T 1sql_A 99 IASKTLEKFHQINAVRVKLS 118 (146)
T ss_dssp HHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEEE
T ss_conf 99999976898238999998
No 10
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=18.76 E-value=31 Score=15.06 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999981478
Q gi|255764506|r 18 VEEAKEAIRVILRWIGDD 35 (205)
Q Consensus 18 ~~~i~~av~~lL~~LGeD 35 (205)
.+++++++.+-|..-|.+
T Consensus 12 T~~~A~~ia~~l~~~g~~ 29 (138)
T 5nul_A 12 TEKMAELIAKGIIESGKD 29 (138)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCE
T ss_conf 999999999987645973
Done!