RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 194
Score = 192 bits (489), Expect = 2e-50
Identities = 79/190 (41%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Query: 14 KKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHF 73
+ + A ILR +G+DP R+GL TP R + + GY++ + + F
Sbjct: 8 NELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQE-TISDVLNDAIF 66
Query: 74 GEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQ 133
E + +MV++KDI FS CEHH++P G++H+ Y+P K V+GLSKL RI+E+YSRRLQ
Sbjct: 67 DE--DHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 124
Query: 134 IQERLTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGK 193
+QERLT QIA AI + GV V+IE HMCM MRG+++ TVT+ G F D
Sbjct: 125 VQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 184
Query: 194 TDFFLKMTHN 203
+ FL + +
Sbjct: 185 REEFLTLIRS 194
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 182 bits (464), Expect = 1e-47
Identities = 74/183 (40%), Positives = 115/183 (62%), Gaps = 3/183 (1%)
Query: 18 VEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEAS 77
+E + L+ IG+DP REGL TP+RV K++ L GY+Q +
Sbjct: 4 LERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFP---A 60
Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137
+ +MV++K + F+S CEHH+LP +GK+H+ YIP ++GLSK RI+++++RRLQ+QER
Sbjct: 61 EGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQER 120
Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197
L +QIA AI+ + +GV V++EG H+CM MRG+++ TVT+A G F ++ + F
Sbjct: 121 LAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEF 180
Query: 198 LKM 200
L
Sbjct: 181 LSH 183
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 154 bits (390), Expect = 5e-39
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Query: 19 EEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSY-KELFAGYKQIPTTQDTSRFHFGEAS 77
+ I++ + D + L +TP R+ K Y E+F+G
Sbjct: 37 SLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDY---ANFPKITLIENKM 93
Query: 78 KYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQER 137
K +MV ++DI+ S CE H + I GK +AYIPK VIGLSK+ RI++ +++R Q+QER
Sbjct: 94 KVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQER 153
Query: 138 LTMQIAHAIESSTDSKGVAVLIEGQHMCMSMRGIKRDGLTTVTTAFTGEFSRDKGKTDFF 197
LT QI A+++ + VAV I+ H C+ RGI+ T TT+ G F + F
Sbjct: 154 LTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEF 213
Query: 198 LKMTHN 203
L+ +
Sbjct: 214 LRAVRH 219
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 384
Score = 28.7 bits (64), Expect = 0.33
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 7 GVFNMKLKKPTVEEAKEAI--RVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYK 60
G+F T +E A RV+ WI D R K D+++ K + AG K
Sbjct: 332 GLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIV---KAVLAGLK 384
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
[TaxId: 9606]}
Length = 253
Score = 25.2 bits (53), Expect = 4.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKELF 56
A+EA + V + + + T +I S+ EL+
Sbjct: 214 ASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSELY 253
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 25.2 bits (53), Expect = 4.2
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 18 VEEAKEA-IRVILRWIGDDPDREGLKDTPDRVIKSYKEL 55
+K + I + ++ D D ++ +E+
Sbjct: 186 CGGSKNLGMTSI--LLDRKGEKREFWDKCDFIVSDLREV 222
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 25.1 bits (54), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 15 KPTVEEAKEAIRVILRWIGDDP 36
PT EE ++ I+ + D P
Sbjct: 285 LPTAEETWLGLKAIMEHVRDHP 306
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 24.9 bits (54), Expect = 5.4
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 145 AIESSTDSKGVAVLIEGQ 162
AI+++T++ VA+ +G
Sbjct: 4 AIDTATEACSVALWNDGT 21
>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida
[TaxId: 303]}
Length = 227
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/108 (10%), Positives = 29/108 (26%)
Query: 9 FNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDT 68
K+ P +++ +R I + +GDD + V + K A ++ T +
Sbjct: 31 VKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE 90
Query: 69 SRFHFGEASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVI 116
+ + ++ + +
Sbjct: 91 PTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPD 138
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 24.4 bits (52), Expect = 6.9
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 15 KPTVEEAKEAIRVILRWIGD 34
+ E E I V R GD
Sbjct: 290 EQVCRETWEGIVVGARRAGD 309
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 24.4 bits (52), Expect = 7.6
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 15 KPTVEEAKEAIRVILRWI 32
PT +E + I+
Sbjct: 287 IPTAQETWLGVLTIMEHT 304
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262
{Pseudomonas fluorescens [TaxId: 294]}
Length = 155
Score = 24.3 bits (53), Expect = 7.6
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 31 WIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRFHFGEASKYQDMVLIKDISF 90
W DP+R L T D ++ E ++ F + +K D LIK++
Sbjct: 26 WNSRDPERVSLAYTLDTQWRNRAEFAHNREEAKA------FLTRKWAKELDYRLIKEL-- 77
Query: 91 FSYCEHHI 98
+++ ++ I
Sbjct: 78 WAFTDNRI 85
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 24.2 bits (52), Expect = 9.3
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 75 EASKYQDMVLIKDISFFSYCEHHILPIWGKIHLAYIPKKHVI 116
+A+K+ + K I I + G Y PK H +
Sbjct: 104 DAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHV 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.407
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 781,432
Number of extensions: 36413
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 21
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)