HHsearch alignment for GI: 255764507 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=97.19 E-value=0.00071 Score=45.20 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=75.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEE--------EEEEECCCCCCCCCCCCCCCCCH-----------------HH
Q ss_conf 9999888999989999999974898-0599--------82110798998546875222379-----------------99
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQN-FEMS--------ISVTTRVRRPNEVDGKDYYFLSL-----------------SR 70 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~-~~~~--------v~~TTR~~R~gE~~G~dY~Fvs~-----------------~~ 70 (222)
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQTQALNA 80 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 96774088554778999988768957874350232237875357889687534981585134712003708899999999
Q ss_pred HHHHHHCCEEEEEEECCCC-C------EEE----------ECCHHHHHHH-CCCCEE----ECCCHHHHHHH--------
Q ss_conf 8665305524454560457-3------341----------3211223221-012203----01452344555--------
Q gi|255764507|r 71 FNELKKANAFIEKAEVHGN-F------YGT----------LRDPIEETIS-KGKDML----FDIDWQGAQNL-------- 120 (222)
Q Consensus 71 F~~~i~~~~FlE~~~~~g~-~------YGt----------~~~~i~~~l~-~g~~~i----ldid~qG~~~l-------- 120 (222)
T Consensus 81 ~~~i~~~Gkipl--~VGGT~lY~k~l~~gl~~~~~~~~~~~r~~~~~~~~~~g~~~ly~~L~~~DP~~a~~ihPND~~R~ 158 (307)
T TIGR00174 81 IADITARGKIPL--LVGGTGLYLKALLEGLSPTPSAEDKLIRESLEILAERQGKSFLYKELKKVDPVAAAKIHPNDTRRV 158 (307)
T ss_pred HHHHHHCCCCEE--EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCHHHH
T ss_conf 999985698348--868578899999714777755565057999999998549157888777507698972177614789
Q ss_pred ---------------------HHCCCCCHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf ---------------------31267415789862132799999998520
Q gi|255764507|r 121 ---------------------HKQMGSNVLSFFILPPTMQELCSRLSLRA 149 (222)
Q Consensus 121 ---------------------~~~~~~~~~~IFI~pps~e~L~~RL~~R~ 149 (222)
T Consensus 159 ~RaLEvfY~TG~~~Se~~~~~~~~L~~~~v~~~l~~~~~e~L~~RI~~R~ 208 (307)
T TIGR00174 159 KRALEVFYATGKPISELFKEQKKELFYNIVQIGLAPLEREALHERIEQRV 208 (307)
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999887507865666403666541466777630058645677899999