HHsearch alignment for GI: 255764507 and conserved domain: TIGR00235
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=95.80 E-value=0.015 Score=36.78 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEECCCCCCH----HHHHHHHHHHCCC--EEEEE-EE----EECCCCCCCC-CCCCCCCCCHHHHHHH---
Q ss_conf 8347972999988899998----9999999974898--05998-21----1079899854-6875222379998665---
Q gi|255764507|r 10 TVNHRGMMLIISSPSGVGK----STIARHLLKCDQN--FEMSI-SV----TTRVRRPNEV-DGKDYYFLSLSRFNEL--- 74 (222)
Q Consensus 10 ~~~~r~~iivl~GpsG~GK----~tl~~~L~~~~~~--~~~~v-~~----TTR~~R~gE~-~G~dY~Fvs~~~F~~~--- 74 (222)
T Consensus 5 P~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~ 84 (220)
T TIGR00235 5 PPKGTCIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLY 84 (220)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHH
T ss_conf 89886179970176610156789999999999831400145775032445889887312464312588980030379999
Q ss_pred -----HHCCE--------EEEEEECCCCCEEEECCHHHHHHHCCC-CEEECCCHHHHHHH-----HHCCCCCHHHHHHHC
Q ss_conf -----30552--------445456045733413211223221012-20301452344555-----312674157898621
Q gi|255764507|r 75 -----KKANA--------FIEKAEVHGNFYGTLRDPIEETISKGK-DMLFDIDWQGAQNL-----HKQMGSNVLSFFILP 135 (222)
Q Consensus 75 -----i~~~~--------FlE~~~~~g~~YGt~~~~i~~~l~~g~-~~ildid~qG~~~l-----~~~~~~~~~~IFI~p 135 (222)
T Consensus 85 ~Hl~nLk~g~~~~~P~Ydyv~HtRv----------~~eT~~~~P~~VvIlE----Gi~~l~D~Rl~~L~--d-lkifvDt 147 (220)
T TIGR00235 85 EHLKNLKNGSAIDVPVYDYVNHTRV----------KKETVHVEPKDVVILE----GILLLTDERLRDLM--D-LKIFVDT 147 (220)
T ss_pred HHHHHHHCCCEECCCCCCCCCEECC----------CCCCEEECCEEEEEEE----CCHHHHHHHHHHHH--C-CEEEEEC
T ss_conf 9999984688022454254100202----------5562687350689970----61888879998871--8-2367746
Q ss_pred CCHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHHH-----HHHHCCEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 32799999998----5201121128999999999999998-----76418979994-988999999999999
Q gi|255764507|r 136 PTMQELCSRLS----LRAKKNQEDKEKVQLRLQNAYSEIK-----KWEFYDYVLIN-DDLENSLSILKSVIE 197 (222)
Q Consensus 136 ps~e~L~~RL~----~R~~~~~d~~e~i~~Rl~~a~~E~~-----~~~~fD~vIvN-ddle~a~~~L~~iI~ 197 (222)
T Consensus 148 ~~D~rliRRl~RD~~~RGR---~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~ 216 (220)
T TIGR00235 148 PLDIRLIRRLERDIEERGR---SLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIK 216 (220)
T ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 8303256565655754289---78899999998534621014550101466762589881688999999999