HHsearch alignment for GI: 255764507 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.30 E-value=0.016 Score=36.47 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCC--CCCCCCC-------CCCCCCCH
Q ss_conf 999888999989999999974898059982110798--9985468-------75222379
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVR--RPNEVDG-------KDYYFLSL 68 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~--R~gE~~G-------~dY~Fvs~ 68 (222)
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Em---g~~l~iTsGP~L~kPgDlaaiLt~L~~gDVLFIDE 89 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDE 89 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEECCH
T ss_conf 6631756874678999999983---89326740675547578999997056896310125