HHsearch alignment for GI: 255764507 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.86 E-value=9.1e-05 Score=50.93 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEE--EECCCCCCC-CCCCCCCCCCHHHHHHHHHCCEEEE-EEECC
Q ss_conf 9729999888999989999999974898--0599821--107989985-4687522237999866530552445-45604
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLKCDQN--FEMSISV--TTRVRRPNE-VDGKDYYFLSLSRFNELKKANAFIE-KAEVH 87 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~~~~~--~~~~v~~--TTR~~R~gE-~~G~dY~Fvs~~~F~~~i~~~~FlE-~~~~~ 87 (222)
T Consensus 1 ~G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~-----~~~~~~~g~~~ 67 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FD-----GDGGVSPGPEF 67 (175)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CC-----CCCCCCCCHHH
T ss_conf 974999868998988999999998476756884185898867631368754223--------48-----77663541569
Q ss_pred CCCEEEECCHHHHHHHCCCCEEECCCHHH---HHHH-HHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 57334132112232210122030145234---4555-3126741578986213279999999852011211289999999
Q gi|255764507|r 88 GNFYGTLRDPIEETISKGKDMLFDIDWQG---AQNL-HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRL 163 (222)
Q Consensus 88 g~~YGt~~~~i~~~l~~g~~~ildid~qG---~~~l-~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~~~d~~e~i~~Rl 163 (222)
T Consensus 68 ~~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G--------~ 138 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG--------Q 138 (175)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC--------H
T ss_conf 99999999999999977998898631238088999999857992799998789-99999998745899964--------6
Q ss_pred HHHHHHHHHH-HHCCEEEEC--CCHHHHHHHHHH
Q ss_conf 9999999876-418979994--988999999999
Q gi|255764507|r 164 QNAYSEIKKW-EFYDYVLIN--DDLENSLSILKS 194 (222)
Q Consensus 164 ~~a~~E~~~~-~~fD~vIvN--ddle~a~~~L~~ 194 (222)
T Consensus 139 A~~q~~~VH~~~~YDleVDTs~~sp~eCA~~I~~ 172 (175)
T cd00227 139 ARKQARVVHAGVEYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 7889998435998856877999999999999999