HHsearch alignment for GI: 255764507 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.82 E-value=0.003 Score=41.24 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=62.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC--CCCC--CHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 999888999989999999974898059982110798998546875--2223--799986653055244545604573341
Q gi|255764507|r 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKD--YYFL--SLSRFNELKKANAFIEKAEVHGNFYGT 93 (222)
Q Consensus 18 ivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~G~d--Y~Fv--s~~~F~~~i~~~~FlE~~~~~g~~YGt 93 (222)
T Consensus 2 I~LiG~~G~GKstigk~la~~l-~~~fiD--~D~~Ie--~~~g~si~eif~~~Ge~~FR~~E~~--~l~-----~-~--- 65 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVD--LDELIE--QRAGMSIPEIFAEEGEEGFRELERE--VLL-----L-L--- 65 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEE--CCHHHH--HHHCCCHHHHHHHCCHHHHHHHHHH--HHH-----H-H---
T ss_conf 8998899998899999999997-989796--859999--9949999999987493878999999--999-----9-8---
Q ss_pred ECCHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHH
Q ss_conf 3211223221012203014523445553126741578986213279999999852011---2112899999999999999
Q gi|255764507|r 94 LRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKK---NQEDKEKVQLRLQNAYSEI 170 (222)
Q Consensus 94 ~~~~i~~~l~~g~~~ildid~qG~~~l~~~~~~~~~~IFI~pps~e~L~~RL~~R~~~---~~d~~e~i~~Rl~~a~~E~ 170 (222)
T Consensus 66 -~~~~~~VIs~GGG~v~~--~~~~~~l~~----~~~vI~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~l~~l~~--~R~~ 135 (154)
T cd00464 66 -LTKENAVIATGGGAVLR--EENRRLLLE----NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLE--EREP 135 (154)
T ss_pred -HCCCCEEEECCCCCCCC--HHHHHHHHH----CCEEEEEECC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HHHH
T ss_conf -56898599738973368--999999995----7908999579-999999960799999888999999999999--9999
Q ss_pred HHHHHCCEEEECCC
Q ss_conf 87641897999498
Q gi|255764507|r 171 KKWEFYDYVLINDD 184 (222)
Q Consensus 171 ~~~~~fD~vIvNdd 184 (222)
T Consensus 136 ~Y~~~Ad~~i~~~~ 149 (154)
T cd00464 136 LYREVADLTIDTDE 149 (154)
T ss_pred HHHHHCCEEEECCC
T ss_conf 99987999997989