HHsearch alignment for GI: 255764507 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.39 E-value=0.0011 Score=44.10 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=35.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHH--HHHHH-HCCEEEEC----CCHHHHHHHHHH
Q ss_conf 789862132799999998520112112-89999999999999--98764-18979994----988999999999
Q gi|255764507|r 129 LSFFILPPTMQELCSRLSLRAKKNQED-KEKVQLRLQNAYSE--IKKWE-FYDYVLIN----DDLENSLSILKS 194 (222)
Q Consensus 129 ~~IFI~pps~e~L~~RL~~R~~~~~d~-~e~i~~Rl~~a~~E--~~~~~-~fD~vIvN----ddle~a~~~L~~ 194 (222)
T Consensus 145 lvIYL~a-~pe~~~~RI~kRgR~~E~~I~~~YL~~L~~~ye~~fl~~~~~~~~vlv~D~~~~~~~~~v~~~~e~ 217 (219)
T cd02030 145 LVIYLDV-PVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred EEEEEEC-CHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999839-999999999983947540899999999999999999998865896799876656659999999984