HHsearch alignment for GI: 255764507 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.78 E-value=0.0014 Score=43.31 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 479729999888999989999999974
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLKC 38 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~~ 38 (222)
T Consensus 23 v~~Gei~~liG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889989999999998599999999779