HHsearch alignment for GI: 255764507 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.71 E-value=0.0016 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 972999988899998999999997
Q gi|255764507|r 14 RGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 14 r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHH
T ss_conf 088899998999999999999863