HHsearch alignment for GI: 255764507 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.33 E-value=0.00049 Score=46.27 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH---HCCEEEEEEECCC
Q ss_conf 797299998889999899999999748-980599821107989985468752223799986653---0552445456045
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK---KANAFIEKAEVHG 88 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~-~~~~~~v~~TTR~~R~gE~~G~dY~Fvs~~~F~~~i---~~~~FlE~~~~~g 88 (222)
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I-----------~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~e 95 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-----------LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-----------EECCEECCCCCHHHHHHCEEEECCCCEECCCCHHH
T ss_conf 6999999999999989999999823861885189-----------99999923189999974069991589672752999
Q ss_pred CC-EEE
Q ss_conf 73-341
Q gi|255764507|r 89 NF-YGT 93 (222)
Q Consensus 89 ~~-YGt 93 (222)
T Consensus 96 Ni~~g~ 101 (238)
T cd03249 96 NIRYGK 101 (238)
T ss_pred HHHCCC
T ss_conf 963368