HHsearch alignment for GI: 255764507 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00031 Score=47.47 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999974898059982110798998--5468752223799986653
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPN--EVDGKDYYFLSLSRFNELK 75 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~g--E~~G~dY~Fvs~~~F~~~i 75 (222)
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i 78 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD------------VDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHCE
T ss_conf 7999999998999829999999966766------------7886899999996608999997317