HHsearch alignment for GI: 255764507 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.37 E-value=0.003 Score=41.19 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 79729999888999989999999
Q gi|255764507|r 13 HRGMMLIISSPSGVGKSTIARHL 35 (222)
Q Consensus 13 ~r~~iivl~GpsG~GK~tl~~~L 35 (222)
T Consensus 19 ~~Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH
T ss_conf 59989999878996098983616