HHsearch alignment for GI: 255764507 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0006 Score=45.67 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 47972999988899998999999997
Q gi|255764507|r 12 NHRGMMLIISSPSGVGKSTIARHLLK 37 (222)
Q Consensus 12 ~~r~~iivl~GpsG~GK~tl~~~L~~ 37 (222)
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~G 46 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998999999999559999999976