HHsearch alignment for GI: 255764507 and conserved domain: cd04164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.96 E-value=0.00062 Score=45.61 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
Q ss_conf 9999888999989999999974898059982110798998546
Q gi|255764507|r 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVD 59 (222)
Q Consensus 17 iivl~GpsG~GK~tl~~~L~~~~~~~~~~v~~TTR~~R~gE~~ 59 (222)
T Consensus 3 ~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~ 45 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID 45 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEE
T ss_conf 9999889999899999999689733432889847863267895